Wall clock time and date at job start Mon Mar 30 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99847 * 2 1 4 4 C 1.50699 * 110.45717 * 55.71053 * 3 2 1 5 5 O 1.21281 * 120.00251 * 231.81578 * 4 3 2 6 6 N 1.34775 * 120.00056 * 51.81479 * 4 3 2 7 7 C 1.46495 * 120.00086 * 174.56018 * 6 4 3 8 8 C 1.50703 * 109.46924 * 90.00462 * 7 6 4 9 9 H 1.08000 * 119.99894 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99621 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99732 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 120.00492 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47351 * 89.99775 * 12 10 8 14 14 H 1.48499 * 109.47312 * 210.00050 * 12 10 8 15 15 H 1.48510 * 109.47209 * 330.00249 * 12 10 8 16 16 C 1.46502 * 119.99738 * 354.56276 * 6 4 3 17 17 C 1.53002 * 117.50055 * 192.81057 * 16 6 4 18 18 C 1.53003 * 60.00280 * 252.51460 * 17 16 6 19 19 C 1.54503 * 110.51479 * 178.32040 * 3 2 1 20 20 C 1.54792 * 103.91626 * 118.61189 * 19 3 2 21 21 O 1.44427 * 104.85787 * 336.11533 * 20 19 3 22 22 C 1.44435 * 105.27033 * 40.46167 * 21 20 19 23 23 H 1.08992 * 109.47159 * 58.20137 * 1 2 3 24 24 H 1.09007 * 109.46628 * 178.19736 * 1 2 3 25 25 H 1.09000 * 109.47065 * 298.19574 * 1 2 3 26 26 H 1.09002 * 109.47489 * 210.00227 * 7 6 4 27 27 H 1.08997 * 109.47615 * 330.00350 * 7 6 4 28 28 H 0.97005 * 120.00293 * 180.02562 * 11 10 8 29 29 H 1.08996 * 115.55269 * 338.52071 * 16 6 4 30 30 H 1.09008 * 117.49249 * 0.02562 * 17 16 6 31 31 H 1.08994 * 117.50089 * 145.02074 * 17 16 6 32 32 H 1.09001 * 117.49335 * 252.51211 * 18 17 16 33 33 H 1.08994 * 117.49862 * 107.48633 * 18 17 16 34 34 H 1.09006 * 110.51329 * 237.28811 * 19 3 2 35 35 H 1.09002 * 110.51017 * 359.97438 * 19 3 2 36 36 H 1.09006 * 110.38914 * 217.25035 * 20 19 3 37 37 H 1.08998 * 110.40169 * 94.99332 * 20 19 3 38 38 H 1.08995 * 110.36853 * 200.65535 * 22 21 20 39 39 H 1.08999 * 110.36598 * 78.32106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4977 2.1102 1.1666 5 8 1.0325 3.2152 0.9834 6 7 1.5562 1.6019 2.4134 7 6 1.1696 2.4278 3.5600 8 6 -0.3029 2.2545 3.8300 9 1 -0.8918 1.5954 3.2094 10 6 -0.8983 2.9381 4.8688 11 7 -2.1832 2.7865 5.1048 12 14 0.1201 4.0785 5.9419 13 1 0.1069 5.4460 5.3629 14 1 -0.4548 4.1149 7.3106 15 1 1.5181 3.5814 6.0052 16 6 2.0066 0.2236 2.6221 17 6 1.7715 -0.3953 4.0015 18 6 3.1854 0.0017 3.5721 19 6 3.5518 1.2119 0.0424 20 6 4.0024 1.8917 -1.2732 21 8 2.8671 1.7745 -2.1583 22 6 1.7115 2.0309 -1.3308 23 1 -0.3633 0.5415 -0.8734 24 1 -0.3633 -1.0273 -0.0323 25 1 -0.3633 0.4856 0.9057 26 1 1.7385 2.1205 4.4375 27 1 1.3779 3.4749 3.3403 28 1 -2.6023 3.2678 5.8354 29 1 1.9280 -0.4330 1.7556 30 1 1.2813 0.2231 4.7536 31 1 1.5381 -1.4591 4.0427 32 1 3.8820 -0.8011 3.3307 33 1 3.6256 0.8813 4.0417 34 1 3.9435 1.7497 0.9059 35 1 3.8706 0.1698 0.0638 36 1 4.8652 1.3738 -1.6922 37 1 4.2393 2.9409 -1.0969 38 1 0.8145 1.6200 -1.7940 39 1 1.5959 3.1015 -1.1618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401631498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:12 Heat of formation + Delta-G solvation = -76.187294 kcal Electronic energy + Delta-G solvation = -22491.306643 eV Core-core repulsion = 19208.154662 eV Total energy + Delta-G solvation = -3283.151982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77920 -38.44952 -36.91430 -36.81249 -33.28997 -32.20140 -31.56499 -28.92454 -28.12712 -26.62445 -23.72495 -22.51986 -22.42226 -21.92577 -20.83871 -18.77330 -17.59160 -16.92134 -16.79295 -16.25081 -15.36317 -15.22348 -14.90303 -14.87501 -14.45397 -14.15716 -13.79857 -13.23708 -13.01474 -12.59449 -12.54281 -12.01150 -11.88168 -11.76566 -11.61145 -11.36044 -11.20292 -11.04906 -10.96374 -10.75120 -10.55191 -10.22018 -10.04655 -9.89899 -9.79542 -9.53649 -8.77667 -8.64967 -7.67130 -6.14465 -4.13211 2.90351 3.22894 3.28532 3.30849 3.45633 3.66878 3.91865 4.33169 4.33465 4.55011 4.71347 4.74133 5.02830 5.17195 5.19668 5.28727 5.37068 5.40114 5.49015 5.55969 5.61360 5.64572 5.73752 5.86041 5.91542 5.94825 5.98473 6.20216 6.40051 6.58701 6.62399 6.66985 6.83200 7.04589 7.23571 7.52688 8.10505 8.38575 8.71899 8.89553 9.45109 10.98666 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022741 B = 0.006798 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.960206 B = 4118.084557 C = 4334.524216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.359 6.359 3 C 0.071 3.929 4 C 0.497 3.503 5 O -0.528 6.528 6 N -0.552 5.552 7 C 0.211 3.789 8 C -0.523 4.523 9 H 0.075 0.925 10 C 0.074 3.926 11 N -0.895 5.895 12 Si 0.872 3.128 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.267 1.267 16 C 0.062 3.938 17 C -0.176 4.176 18 C -0.206 4.206 19 C -0.136 4.136 20 C 0.046 3.954 21 O -0.369 6.369 22 C 0.033 3.967 23 H 0.046 0.954 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.265 0.735 29 H 0.150 0.850 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 -6.430 -8.290 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.278 6.278 3 C 0.027 3.973 4 C 0.282 3.718 5 O -0.405 6.405 6 N -0.281 5.281 7 C 0.091 3.909 8 C -0.562 4.562 9 H 0.093 0.907 10 C -0.129 4.129 11 N -0.533 5.533 12 Si 0.699 3.301 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.192 1.192 16 C -0.043 4.043 17 C -0.214 4.214 18 C -0.245 4.245 19 C -0.174 4.174 20 C -0.031 4.031 21 O -0.287 6.287 22 C -0.044 4.044 23 H 0.065 0.935 24 H 0.111 0.889 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.452 -5.975 -8.470 15.447 hybrid contribution 0.079 0.807 1.105 1.370 sum 11.531 -5.167 -7.366 14.626 Atomic orbital electron populations 1.22994 0.79992 1.03329 1.01768 1.87870 1.20810 1.24987 1.94136 1.23099 0.95298 0.84441 0.94431 1.20486 0.79851 0.87215 0.84272 1.90699 1.44698 1.21044 1.84057 1.47443 1.62013 1.11937 1.06711 1.19731 0.96965 0.90775 0.83401 1.21223 0.91774 1.27885 1.15271 0.90665 1.24834 0.94800 0.96156 0.97084 1.69885 1.10043 1.42543 1.30824 0.86913 0.80790 0.82169 0.80208 1.19918 1.20946 1.19157 1.22315 1.00359 0.85314 0.96302 1.23328 0.97944 1.01278 0.98810 1.23377 0.92079 1.03263 1.05801 1.23020 0.91044 1.03868 0.99430 1.23495 0.90408 1.00177 0.89001 1.89117 1.15151 1.92210 1.32265 1.23915 0.90106 1.01475 0.88939 0.93509 0.88874 0.92048 0.94950 0.94779 0.92513 0.83313 0.86657 0.88773 0.88812 0.89155 0.89105 0.88394 0.88565 0.91888 0.88204 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.19 101.05 1.03 1.25 16 2 O -0.36 -5.43 7.45 -35.23 -0.26 -5.70 16 3 C 0.07 1.11 0.58 -90.21 -0.05 1.06 16 4 C 0.50 9.96 4.99 -10.99 -0.05 9.90 16 5 O -0.53 -12.55 15.07 5.56 0.08 -12.46 16 6 N -0.55 -11.22 2.73 -167.47 -0.46 -11.67 16 7 C 0.21 5.05 3.46 -5.20 -0.02 5.03 16 8 C -0.52 -14.57 9.51 -34.44 -0.33 -14.89 16 9 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 10 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 11 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 12 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 16 C 0.06 1.03 5.29 -67.92 -0.36 0.67 16 17 C -0.18 -2.87 9.72 -26.73 -0.26 -3.13 16 18 C -0.21 -2.93 10.03 -26.73 -0.27 -3.20 16 19 C -0.14 -1.73 5.91 -25.00 -0.15 -1.88 16 20 C 0.05 0.54 7.64 38.10 0.29 0.83 16 21 O -0.37 -5.40 11.65 -35.23 -0.41 -5.81 16 22 C 0.03 0.51 6.59 37.93 0.25 0.76 16 23 H 0.05 0.64 6.39 -51.93 -0.33 0.31 16 24 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 25 H 0.06 1.12 7.11 -51.93 -0.37 0.75 16 26 H 0.03 0.75 5.32 -51.93 -0.28 0.47 16 27 H 0.03 0.87 6.93 -51.93 -0.36 0.51 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.15 2.31 4.91 -51.93 -0.25 2.05 16 30 H 0.12 2.24 6.29 -51.92 -0.33 1.92 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.35 7.87 -51.93 -0.41 0.94 16 34 H 0.09 1.16 7.73 -51.93 -0.40 0.76 16 35 H 0.10 1.11 8.00 -51.93 -0.42 0.69 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.44 6.26 -51.93 -0.33 1.12 16 39 H 0.09 1.51 6.84 -51.93 -0.36 1.15 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -32.22 309.20 -5.83 -38.04 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.53 Total: 4.27 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.01 Total: -1.59 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.32 Total: -37.94 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.59 Total: -23.97 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.22 -5.83 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401631498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.147 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds