Wall clock time and date at job start Mon Mar 30 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99847 * 2 1 4 4 C 1.50699 * 110.45717 * 55.71053 * 3 2 1 5 5 O 1.21281 * 120.00251 * 231.81578 * 4 3 2 6 6 N 1.34775 * 120.00056 * 51.81479 * 4 3 2 7 7 C 1.46495 * 120.00086 * 174.56018 * 6 4 3 8 8 C 1.50703 * 109.46924 * 90.00462 * 7 6 4 9 9 H 1.08000 * 119.99894 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99621 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99732 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 120.00492 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47351 * 89.99775 * 12 10 8 14 14 H 1.48499 * 109.47312 * 210.00050 * 12 10 8 15 15 H 1.48510 * 109.47209 * 330.00249 * 12 10 8 16 16 C 1.46502 * 119.99738 * 354.56276 * 6 4 3 17 17 C 1.53002 * 117.50055 * 192.81057 * 16 6 4 18 18 C 1.53003 * 60.00280 * 252.51460 * 17 16 6 19 19 C 1.54503 * 110.51479 * 178.32040 * 3 2 1 20 20 C 1.54792 * 103.91626 * 118.61189 * 19 3 2 21 21 O 1.44427 * 104.85787 * 336.11533 * 20 19 3 22 22 C 1.44435 * 105.27033 * 40.46167 * 21 20 19 23 23 H 1.08992 * 109.47159 * 58.20137 * 1 2 3 24 24 H 1.09007 * 109.46628 * 178.19736 * 1 2 3 25 25 H 1.09000 * 109.47065 * 298.19574 * 1 2 3 26 26 H 1.09002 * 109.47489 * 210.00227 * 7 6 4 27 27 H 1.08997 * 109.47615 * 330.00350 * 7 6 4 28 28 H 0.97005 * 120.00293 * 180.02562 * 11 10 8 29 29 H 1.08996 * 115.55269 * 338.52071 * 16 6 4 30 30 H 1.09008 * 117.49249 * 0.02562 * 17 16 6 31 31 H 1.08994 * 117.50089 * 145.02074 * 17 16 6 32 32 H 1.09001 * 117.49335 * 252.51211 * 18 17 16 33 33 H 1.08994 * 117.49862 * 107.48633 * 18 17 16 34 34 H 1.09006 * 110.51329 * 237.28811 * 19 3 2 35 35 H 1.09002 * 110.51017 * 359.97438 * 19 3 2 36 36 H 1.09006 * 110.38914 * 217.25035 * 20 19 3 37 37 H 1.08998 * 110.40169 * 94.99332 * 20 19 3 38 38 H 1.08995 * 110.36853 * 200.65535 * 22 21 20 39 39 H 1.08999 * 110.36598 * 78.32106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4977 2.1102 1.1666 5 8 1.0325 3.2152 0.9834 6 7 1.5562 1.6019 2.4134 7 6 1.1696 2.4278 3.5600 8 6 -0.3029 2.2545 3.8300 9 1 -0.8918 1.5954 3.2094 10 6 -0.8983 2.9381 4.8688 11 7 -2.1832 2.7865 5.1048 12 14 0.1201 4.0785 5.9419 13 1 0.1069 5.4460 5.3629 14 1 -0.4548 4.1149 7.3106 15 1 1.5181 3.5814 6.0052 16 6 2.0066 0.2236 2.6221 17 6 1.7715 -0.3953 4.0015 18 6 3.1854 0.0017 3.5721 19 6 3.5518 1.2119 0.0424 20 6 4.0024 1.8917 -1.2732 21 8 2.8671 1.7745 -2.1583 22 6 1.7115 2.0309 -1.3308 23 1 -0.3633 0.5415 -0.8734 24 1 -0.3633 -1.0273 -0.0323 25 1 -0.3633 0.4856 0.9057 26 1 1.7385 2.1205 4.4375 27 1 1.3779 3.4749 3.3403 28 1 -2.6023 3.2678 5.8354 29 1 1.9280 -0.4330 1.7556 30 1 1.2813 0.2231 4.7536 31 1 1.5381 -1.4591 4.0427 32 1 3.8820 -0.8011 3.3307 33 1 3.6256 0.8813 4.0417 34 1 3.9435 1.7497 0.9059 35 1 3.8706 0.1698 0.0638 36 1 4.8652 1.3738 -1.6922 37 1 4.2393 2.9409 -1.0969 38 1 0.8145 1.6200 -1.7940 39 1 1.5959 3.1015 -1.1618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401631498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:12 Heat of formation + Delta-G solvation = -99.730638 kcal Electronic energy + Delta-G solvation = -22492.327559 eV Core-core repulsion = 19208.154662 eV Total energy + Delta-G solvation = -3284.172898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.12983 -39.79352 -38.38077 -38.05999 -35.21620 -33.95838 -32.81010 -30.34286 -29.76477 -27.83896 -25.46099 -23.96345 -23.58379 -23.15553 -22.27741 -20.21098 -19.23817 -18.84072 -17.99525 -17.58516 -16.82618 -16.55182 -16.37181 -16.23465 -15.96878 -15.49458 -15.17079 -14.76850 -14.62987 -14.21962 -13.70824 -13.67836 -13.55317 -12.94926 -12.92248 -12.85277 -12.58860 -12.44834 -12.36483 -12.22372 -12.18889 -11.86167 -11.60597 -11.45329 -11.24690 -10.91661 -10.86212 -10.23148 -9.28970 -8.36448 -6.40667 1.27626 1.31146 1.37376 1.38891 1.96640 2.26296 2.44662 2.77343 2.96984 3.09005 3.32536 3.47488 3.57729 3.91680 4.06341 4.15568 4.18199 4.23365 4.27264 4.38578 4.40754 4.58250 4.63478 4.74649 4.76733 4.77085 4.83192 4.85557 4.95030 5.03136 5.21067 5.37203 5.39448 5.49734 5.53995 5.83866 6.19229 6.54781 6.60265 7.09169 7.24818 8.80244 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022741 B = 0.006798 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.960206 B = 4118.084557 C = 4334.524216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.350 6.350 3 C 0.076 3.924 4 C 0.490 3.510 5 O -0.578 6.578 6 N -0.557 5.557 7 C 0.223 3.777 8 C -0.523 4.523 9 H 0.029 0.971 10 C 0.015 3.985 11 N -0.942 5.942 12 Si 0.940 3.060 13 H -0.276 1.276 14 H -0.274 1.274 15 H -0.241 1.241 16 C 0.042 3.958 17 C -0.190 4.190 18 C -0.170 4.170 19 C -0.130 4.130 20 C 0.042 3.958 21 O -0.376 6.376 22 C 0.036 3.964 23 H 0.055 0.945 24 H 0.124 0.876 25 H 0.019 0.981 26 H 0.049 0.951 27 H 0.017 0.983 28 H 0.268 0.732 29 H 0.165 0.835 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.939 -7.766 -8.548 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.268 6.268 3 C 0.033 3.967 4 C 0.278 3.722 5 O -0.458 6.458 6 N -0.285 5.285 7 C 0.101 3.899 8 C -0.562 4.562 9 H 0.048 0.952 10 C -0.184 4.184 11 N -0.582 5.582 12 Si 0.763 3.237 13 H -0.202 1.202 14 H -0.199 1.199 15 H -0.164 1.164 16 C -0.061 4.061 17 C -0.228 4.228 18 C -0.209 4.209 19 C -0.168 4.168 20 C -0.034 4.034 21 O -0.295 6.295 22 C -0.042 4.042 23 H 0.073 0.927 24 H 0.142 0.858 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.181 0.819 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.670 -7.359 -8.735 18.592 hybrid contribution -0.982 1.161 1.132 1.896 sum 13.688 -6.198 -7.603 16.840 Atomic orbital electron populations 1.23025 0.79983 1.04916 0.99987 1.87874 1.20736 1.24357 1.93842 1.23070 0.97392 0.84029 0.92250 1.21315 0.78762 0.87007 0.85143 1.90663 1.46812 1.23446 1.84887 1.47477 1.61869 1.13198 1.05976 1.19354 0.94403 0.90688 0.85423 1.21372 0.93715 1.26733 1.14378 0.95226 1.25762 0.95970 0.97919 0.98724 1.70035 1.12098 1.44121 1.31946 0.85836 0.80374 0.79314 0.78217 1.20171 1.19912 1.16378 1.22623 1.02786 0.83453 0.97241 1.23313 1.00052 1.01992 0.97457 1.23466 0.91187 1.03837 1.02383 1.23105 0.88067 1.05544 1.00071 1.23759 0.90398 1.00957 0.88247 1.89114 1.15531 1.92131 1.32729 1.23781 0.91046 1.00346 0.89028 0.92672 0.85797 0.96269 0.93354 0.96521 0.92295 0.81873 0.90357 0.86421 0.84664 0.89624 0.89045 0.85971 0.85029 0.91608 0.87719 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.19 113.37 1.16 1.64 16 2 O -0.35 -9.94 7.45 -148.98 -1.11 -11.05 16 3 C 0.08 2.31 0.58 -10.53 -0.01 2.30 16 4 C 0.49 19.96 4.99 87.66 0.44 20.40 16 5 O -0.58 -28.65 15.07 -3.03 -0.05 -28.69 16 6 N -0.56 -22.75 2.73 -802.14 -2.19 -24.95 16 7 C 0.22 10.82 3.46 85.63 0.30 11.11 16 8 C -0.52 -30.45 9.51 25.60 0.24 -30.21 16 9 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 10 C 0.01 0.85 5.47 84.66 0.46 1.31 16 11 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 12 Si 0.94 44.19 27.47 68.60 1.88 46.07 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 15 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 16 C 0.04 1.34 5.29 44.99 0.24 1.57 16 17 C -0.19 -5.93 9.72 30.60 0.30 -5.63 16 18 C -0.17 -4.23 10.03 30.60 0.31 -3.92 16 19 C -0.13 -2.92 5.91 31.72 0.19 -2.73 16 20 C 0.04 0.86 7.64 72.59 0.55 1.42 16 21 O -0.38 -10.21 11.65 -148.98 -1.74 -11.95 16 22 C 0.04 1.08 6.59 72.49 0.48 1.56 16 23 H 0.05 1.50 6.39 -2.39 -0.02 1.49 16 24 H 0.12 2.80 8.14 -2.38 -0.02 2.78 16 25 H 0.02 0.72 7.11 -2.39 -0.02 0.70 16 26 H 0.05 2.19 5.32 -2.39 -0.01 2.18 16 27 H 0.02 0.87 6.93 -2.39 -0.02 0.85 16 28 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 29 H 0.16 4.65 4.91 -2.39 -0.01 4.64 16 30 H 0.08 3.06 6.29 -2.38 -0.01 3.04 16 31 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.26 7.87 -2.39 -0.02 2.24 16 34 H 0.09 2.07 7.73 -2.38 -0.02 2.05 16 35 H 0.12 2.17 8.00 -2.39 -0.02 2.15 16 36 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 2.99 6.26 -2.39 -0.01 2.97 16 39 H 0.07 2.44 6.84 -2.39 -0.02 2.43 16 Total: -1.00 -74.18 309.20 2.75 -71.43 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 1.00 Total: 19.15 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 4.65 Total: -1.17 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.89 Total: -83.78 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.89 Total: -51.70 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -74.18 2.75 -71.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401631498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.297 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds