Wall clock time and date at job start Mon Mar 30 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00125 * 2 1 4 4 C 1.50700 * 110.45473 * 298.70674 * 3 2 1 5 5 O 1.21280 * 119.99948 * 146.04313 * 4 3 2 6 6 N 1.34770 * 120.00106 * 326.03896 * 4 3 2 7 7 C 1.47428 * 125.64940 * 355.33288 * 6 4 3 8 8 C 1.54906 * 104.83432 * 204.09735 * 7 6 4 9 9 C 1.55152 * 101.58062 * 322.98774 * 8 7 6 10 10 H 1.09000 * 110.72149 * 276.96519 * 9 8 7 11 11 C 1.50701 * 110.72078 * 153.86991 * 9 8 7 12 12 H 1.08007 * 119.99823 * 241.45360 * 11 9 8 13 13 C 1.37872 * 120.00053 * 61.45342 * 11 9 8 14 14 N 1.31513 * 120.00141 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99850 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47208 * 89.99969 * 15 13 11 17 17 H 1.48500 * 109.47223 * 210.00112 * 15 13 11 18 18 H 1.48508 * 109.46874 * 329.99644 * 15 13 11 19 19 C 1.47016 * 125.65276 * 175.29556 * 6 4 3 20 20 C 1.54505 * 110.63223 * 176.01643 * 3 2 1 21 21 C 1.54479 * 104.06353 * 241.29895 * 20 3 2 22 22 O 1.44419 * 104.80456 * 336.01936 * 21 20 3 23 23 C 1.44431 * 105.27345 * 40.51327 * 22 21 20 24 24 H 1.09005 * 109.47344 * 295.31231 * 1 2 3 25 25 H 1.08996 * 109.47580 * 55.31981 * 1 2 3 26 26 H 1.09004 * 109.47304 * 175.31835 * 1 2 3 27 27 H 1.09002 * 110.36852 * 85.25451 * 7 6 4 28 28 H 1.09004 * 110.36155 * 322.93704 * 7 6 4 29 29 H 1.08995 * 111.00757 * 81.06435 * 8 7 6 30 30 H 1.09006 * 111.00180 * 204.87866 * 8 7 6 31 31 H 0.96997 * 119.99988 * 180.02562 * 14 13 11 32 32 H 1.09007 * 109.88562 * 59.55430 * 19 6 4 33 33 H 1.09004 * 110.01223 * 298.46498 * 19 6 4 34 34 H 1.08998 * 110.50819 * 359.94675 * 20 3 2 35 35 H 1.09000 * 110.51148 * 122.64913 * 20 3 2 36 36 H 1.09007 * 110.36779 * 217.18822 * 21 20 3 37 37 H 1.09004 * 110.46493 * 94.90553 * 21 20 3 38 38 H 1.08995 * 110.37028 * 200.65438 * 23 22 21 39 39 H 1.08998 * 110.37101 * 78.31727 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6048 2.0624 -1.2384 5 8 1.4373 3.2626 -1.1879 6 7 1.4286 1.4058 -2.4021 7 6 1.6909 -0.0272 -2.6284 8 6 1.9423 -0.1486 -4.1521 9 6 0.9281 0.8801 -4.7180 10 1 -0.0643 0.4372 -4.8020 11 6 1.3901 1.4054 -6.0528 12 1 1.5956 2.4585 -6.1770 13 6 1.5504 0.5418 -7.1155 14 7 1.2996 -0.7403 -6.9645 15 14 2.1237 1.1929 -8.7699 16 1 3.6067 1.1494 -8.8319 17 1 1.5580 0.3525 -9.8557 18 1 1.6620 2.5944 -8.9372 19 6 0.9423 1.9997 -3.6560 20 6 3.5494 1.2161 0.1005 21 6 3.8828 1.9497 1.4184 22 8 2.7682 2.8417 1.6364 23 6 1.5957 2.0825 1.2692 24 1 -0.3634 0.4394 0.9290 25 1 -0.3634 0.5847 -0.8450 26 1 -0.3634 -1.0243 -0.0839 27 1 0.8247 -0.6218 -2.3382 28 1 2.5731 -0.3438 -2.0719 29 1 2.9650 0.1324 -4.4030 30 1 1.7178 -1.1548 -4.5061 31 1 1.4127 -1.3480 -7.7121 32 1 1.6112 2.8008 -3.9708 33 1 -0.0653 2.3916 -3.5169 34 1 3.8689 0.1752 0.1512 35 1 4.0172 1.7193 -0.7457 36 1 4.8078 2.5167 1.3135 37 1 3.9658 1.2382 2.2401 38 1 0.7637 2.7516 1.0498 39 1 1.3267 1.3902 2.0670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402126316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:56 Heat of formation + Delta-G solvation = -116.027037 kcal Electronic energy + Delta-G solvation = -22063.760247 eV Core-core repulsion = 18778.880684 eV Total energy + Delta-G solvation = -3284.879563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82815 -38.51603 -37.13308 -36.65914 -33.03328 -31.70884 -30.25423 -28.96751 -28.41239 -26.79667 -25.33583 -23.37155 -22.62292 -21.39452 -19.74389 -19.00639 -17.68270 -16.87308 -16.51161 -15.86561 -15.63608 -15.35533 -14.94970 -14.69905 -14.56064 -14.14066 -13.68789 -13.41770 -12.67659 -12.58803 -12.47193 -12.30216 -11.98338 -11.70886 -11.36816 -11.33713 -11.21308 -11.15834 -11.02251 -10.80217 -10.49256 -10.35236 -9.86367 -9.79331 -9.51714 -9.09862 -8.99198 -8.50843 -8.03110 -6.13078 -4.16564 2.79729 3.22962 3.25924 3.32997 3.36918 3.48953 3.98427 4.36416 4.45446 4.54022 4.68996 4.96852 5.05977 5.20423 5.22963 5.28807 5.40267 5.53471 5.57731 5.64165 5.66452 5.70780 5.83547 5.95074 6.01581 6.24294 6.28537 6.54791 6.59794 6.77973 6.92570 7.02082 7.10966 7.47010 7.66851 7.85766 8.04965 8.25241 8.48829 8.84623 9.48511 10.96522 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033668 B = 0.004941 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.451155 B = 5665.577394 C = 5879.493632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.359 6.359 3 C 0.072 3.928 4 C 0.505 3.495 5 O -0.541 6.541 6 N -0.599 5.599 7 C 0.100 3.900 8 C -0.110 4.110 9 C 0.044 3.956 10 H 0.039 0.961 11 C -0.516 4.516 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.109 3.891 20 C -0.137 4.137 21 C 0.046 3.954 22 O -0.359 6.359 23 C 0.042 3.958 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 -1.657 14.838 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.277 6.277 3 C 0.028 3.972 4 C 0.291 3.709 5 O -0.420 6.420 6 N -0.331 5.331 7 C -0.022 4.022 8 C -0.149 4.149 9 C 0.025 3.975 10 H 0.057 0.943 11 C -0.554 4.554 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.012 4.012 20 C -0.175 4.175 21 C -0.030 4.030 22 O -0.277 6.277 23 C -0.036 4.036 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.632 -1.102 14.892 15.021 hybrid contribution 0.092 0.114 -1.115 1.125 sum 1.725 -0.988 13.776 13.919 Atomic orbital electron populations 1.22918 0.80528 1.03566 1.00620 1.88009 1.20318 1.24693 1.94717 1.23139 0.95824 0.84203 0.93995 1.20383 0.78741 0.87600 0.84212 1.90704 1.52055 1.14041 1.85155 1.48764 1.62886 1.11553 1.09921 1.22615 0.99894 0.80233 0.99472 1.22784 1.00596 1.02305 0.89167 1.19712 0.95882 0.90171 0.91705 0.94284 1.21029 1.45828 0.94404 0.94151 0.92299 1.24937 0.95045 0.94853 0.98819 1.69936 1.48479 1.02485 1.31741 0.86559 0.78900 0.78980 0.83394 1.20631 1.21178 1.19824 1.22388 0.97460 0.98646 0.82756 1.22907 0.91158 1.03508 0.99878 1.23450 0.91368 0.92955 0.95276 1.89193 1.15025 1.36207 1.87313 1.23819 0.90678 0.95374 0.93699 0.93805 0.93056 0.88723 0.92201 0.91769 0.92358 0.89742 0.92871 0.91963 0.93361 0.88126 0.89174 0.88488 0.91689 0.87925 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.15 101.05 0.93 1.16 16 2 O -0.36 -4.85 8.08 -35.23 -0.28 -5.13 16 3 C 0.07 1.05 0.65 -90.21 -0.06 0.99 16 4 C 0.50 9.40 5.43 -10.99 -0.06 9.34 16 5 O -0.54 -11.83 16.26 5.56 0.09 -11.74 16 6 N -0.60 -11.54 2.81 -170.52 -0.48 -12.02 16 7 C 0.10 1.79 5.07 -2.53 -0.01 1.77 16 8 C -0.11 -2.37 5.75 -24.59 -0.14 -2.51 16 9 C 0.04 1.05 2.87 -89.94 -0.26 0.79 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.52 -13.62 8.50 -34.44 -0.29 -13.91 16 12 H 0.06 1.56 7.57 -52.48 -0.40 1.16 16 13 C 0.07 1.74 5.33 -17.82 -0.10 1.65 16 14 N -0.89 -24.14 12.12 55.43 0.67 -23.47 16 15 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.11 2.36 6.45 -3.07 -0.02 2.34 16 20 C -0.14 -1.73 6.33 -25.17 -0.16 -1.89 16 21 C 0.05 0.52 7.63 37.93 0.29 0.81 16 22 O -0.36 -5.28 11.65 -35.23 -0.41 -5.69 16 23 C 0.04 0.57 5.47 37.93 0.21 0.78 16 24 H 0.04 0.44 7.22 -51.93 -0.38 0.06 16 25 H 0.05 0.71 6.40 -51.93 -0.33 0.38 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.00 6.79 -51.93 -0.35 0.65 16 28 H 0.06 1.05 7.17 -51.93 -0.37 0.68 16 29 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 30 H 0.08 1.92 7.54 -51.93 -0.39 1.53 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.06 1.44 7.66 -51.93 -0.40 1.04 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.09 8.00 -51.93 -0.42 0.68 16 35 H 0.09 1.24 7.73 -51.93 -0.40 0.84 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.50 7.38 -51.93 -0.38 1.11 16 39 H 0.07 0.82 7.81 -51.93 -0.41 0.41 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -29.92 308.74 -6.35 -36.26 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.89 Total: 0.14 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 0.32 Total: 1.33 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.19 Total: -35.48 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.60 Total: -22.56 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.92 -6.35 -36.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402126316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.766 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds