Wall clock time and date at job start Mon Mar 30 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00125 * 2 1 4 4 C 1.50700 * 110.45473 * 298.70674 * 3 2 1 5 5 O 1.21280 * 119.99948 * 146.04313 * 4 3 2 6 6 N 1.34770 * 120.00106 * 326.03896 * 4 3 2 7 7 C 1.47428 * 125.64940 * 355.33288 * 6 4 3 8 8 C 1.54906 * 104.83432 * 204.09735 * 7 6 4 9 9 C 1.55152 * 101.58062 * 322.98774 * 8 7 6 10 10 H 1.09000 * 110.72149 * 276.96519 * 9 8 7 11 11 C 1.50701 * 110.72078 * 153.86991 * 9 8 7 12 12 H 1.08007 * 119.99823 * 241.45360 * 11 9 8 13 13 C 1.37872 * 120.00053 * 61.45342 * 11 9 8 14 14 N 1.31513 * 120.00141 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99850 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47208 * 89.99969 * 15 13 11 17 17 H 1.48500 * 109.47223 * 210.00112 * 15 13 11 18 18 H 1.48508 * 109.46874 * 329.99644 * 15 13 11 19 19 C 1.47016 * 125.65276 * 175.29556 * 6 4 3 20 20 C 1.54505 * 110.63223 * 176.01643 * 3 2 1 21 21 C 1.54479 * 104.06353 * 241.29895 * 20 3 2 22 22 O 1.44419 * 104.80456 * 336.01936 * 21 20 3 23 23 C 1.44431 * 105.27345 * 40.51327 * 22 21 20 24 24 H 1.09005 * 109.47344 * 295.31231 * 1 2 3 25 25 H 1.08996 * 109.47580 * 55.31981 * 1 2 3 26 26 H 1.09004 * 109.47304 * 175.31835 * 1 2 3 27 27 H 1.09002 * 110.36852 * 85.25451 * 7 6 4 28 28 H 1.09004 * 110.36155 * 322.93704 * 7 6 4 29 29 H 1.08995 * 111.00757 * 81.06435 * 8 7 6 30 30 H 1.09006 * 111.00180 * 204.87866 * 8 7 6 31 31 H 0.96997 * 119.99988 * 180.02562 * 14 13 11 32 32 H 1.09007 * 109.88562 * 59.55430 * 19 6 4 33 33 H 1.09004 * 110.01223 * 298.46498 * 19 6 4 34 34 H 1.08998 * 110.50819 * 359.94675 * 20 3 2 35 35 H 1.09000 * 110.51148 * 122.64913 * 20 3 2 36 36 H 1.09007 * 110.36779 * 217.18822 * 21 20 3 37 37 H 1.09004 * 110.46493 * 94.90553 * 21 20 3 38 38 H 1.08995 * 110.37028 * 200.65438 * 23 22 21 39 39 H 1.08998 * 110.37101 * 78.31727 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6048 2.0624 -1.2384 5 8 1.4373 3.2626 -1.1879 6 7 1.4286 1.4058 -2.4021 7 6 1.6909 -0.0272 -2.6284 8 6 1.9423 -0.1486 -4.1521 9 6 0.9281 0.8801 -4.7180 10 1 -0.0643 0.4372 -4.8020 11 6 1.3901 1.4054 -6.0528 12 1 1.5956 2.4585 -6.1770 13 6 1.5504 0.5418 -7.1155 14 7 1.2996 -0.7403 -6.9645 15 14 2.1237 1.1929 -8.7699 16 1 3.6067 1.1494 -8.8319 17 1 1.5580 0.3525 -9.8557 18 1 1.6620 2.5944 -8.9372 19 6 0.9423 1.9997 -3.6560 20 6 3.5494 1.2161 0.1005 21 6 3.8828 1.9497 1.4184 22 8 2.7682 2.8417 1.6364 23 6 1.5957 2.0825 1.2692 24 1 -0.3634 0.4394 0.9290 25 1 -0.3634 0.5847 -0.8450 26 1 -0.3634 -1.0243 -0.0839 27 1 0.8247 -0.6218 -2.3382 28 1 2.5731 -0.3438 -2.0719 29 1 2.9650 0.1324 -4.4030 30 1 1.7178 -1.1548 -4.5061 31 1 1.4127 -1.3480 -7.7121 32 1 1.6112 2.8008 -3.9708 33 1 -0.0653 2.3916 -3.5169 34 1 3.8689 0.1752 0.1512 35 1 4.0172 1.7193 -0.7457 36 1 4.8078 2.5167 1.3135 37 1 3.9658 1.2382 2.2401 38 1 0.7637 2.7516 1.0498 39 1 1.3267 1.3902 2.0670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402126316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:56 Heat of formation + Delta-G solvation = -136.284175 kcal Electronic energy + Delta-G solvation = -22064.638662 eV Core-core repulsion = 18778.880684 eV Total energy + Delta-G solvation = -3285.757978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.08400 -39.88575 -38.38925 -38.12692 -34.96576 -32.84294 -31.96808 -30.14266 -29.97022 -27.74578 -27.16776 -24.86343 -23.75228 -22.74117 -21.52823 -20.37060 -19.06857 -18.49297 -17.86942 -17.07771 -16.99089 -16.79759 -16.51971 -15.94448 -15.82249 -15.34070 -15.17427 -14.65248 -14.36311 -14.15732 -13.81194 -13.74453 -13.15289 -13.07110 -12.94174 -12.87979 -12.70719 -12.67349 -12.37253 -12.28278 -12.20438 -11.65073 -11.44778 -11.38497 -10.96258 -10.86980 -10.52755 -10.44934 -9.65848 -8.17529 -6.27146 1.34317 1.41279 1.43229 1.52474 1.86665 2.36347 2.42452 2.99966 3.13982 3.26352 3.38876 3.61384 4.04666 4.07117 4.15955 4.20054 4.32231 4.37336 4.40353 4.44034 4.47780 4.55785 4.69539 4.74538 4.75235 4.77142 4.81548 4.88643 5.08205 5.23697 5.29351 5.56909 5.60183 5.74404 5.84845 5.88511 6.25358 6.52714 6.77626 6.97456 7.40504 8.91315 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033668 B = 0.004941 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.451155 B = 5665.577394 C = 5879.493632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.355 6.355 3 C 0.077 3.923 4 C 0.502 3.498 5 O -0.579 6.579 6 N -0.602 5.602 7 C 0.116 3.884 8 C -0.101 4.101 9 C 0.040 3.960 10 H 0.020 0.980 11 C -0.538 4.538 12 H 0.048 0.952 13 C 0.025 3.975 14 N -0.909 5.909 15 Si 0.952 3.048 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.273 1.273 19 C 0.119 3.881 20 C -0.137 4.137 21 C 0.046 3.954 22 O -0.386 6.386 23 C 0.045 3.955 24 H 0.064 0.936 25 H 0.026 0.974 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -2.803 16.357 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.274 6.274 3 C 0.033 3.967 4 C 0.290 3.710 5 O -0.460 6.460 6 N -0.333 5.333 7 C -0.005 4.005 8 C -0.140 4.140 9 C 0.021 3.979 10 H 0.038 0.962 11 C -0.576 4.576 12 H 0.067 0.933 13 C -0.176 4.176 14 N -0.547 5.547 15 Si 0.778 3.222 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.198 1.198 19 C -0.003 4.003 20 C -0.175 4.175 21 C -0.030 4.030 22 O -0.305 6.305 23 C -0.032 4.032 24 H 0.082 0.918 25 H 0.044 0.956 26 H 0.136 0.864 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.374 -2.267 16.424 16.749 hybrid contribution -0.176 0.486 -1.591 1.673 sum 2.198 -1.781 14.834 15.101 Atomic orbital electron populations 1.23107 0.79629 1.04861 1.00654 1.88016 1.21245 1.23589 1.94535 1.23092 0.97269 0.84394 0.91912 1.21268 0.77334 0.87433 0.84944 1.90678 1.53505 1.15988 1.85825 1.48790 1.63056 1.12006 1.09495 1.22532 1.01631 0.79567 0.96809 1.22558 0.98816 1.00699 0.91878 1.19617 0.95329 0.91320 0.91592 0.96165 1.21299 1.46365 0.94150 0.95835 0.93329 1.25596 0.95073 0.95099 1.01794 1.70018 1.48871 1.03205 1.32652 0.85643 0.78544 0.78337 0.79656 1.20118 1.20526 1.19830 1.22043 0.97022 0.97495 0.83761 1.22989 0.89300 1.05042 1.00167 1.23687 0.90767 0.93198 0.95362 1.89166 1.16148 1.37797 1.87401 1.23843 0.90085 0.95342 0.93954 0.91750 0.95562 0.86350 0.90490 0.89368 0.93962 0.90928 0.92665 0.94020 0.93504 0.85710 0.90908 0.87207 0.88605 0.89671 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.15 113.37 1.04 1.31 16 2 O -0.36 -8.46 8.08 -148.98 -1.20 -9.66 16 3 C 0.08 2.09 0.65 -10.53 -0.01 2.08 16 4 C 0.50 18.51 5.43 87.66 0.48 18.99 16 5 O -0.58 -25.73 16.26 -3.03 -0.05 -25.78 16 6 N -0.60 -23.11 2.81 -811.79 -2.28 -25.39 16 7 C 0.12 4.00 5.07 86.85 0.44 4.44 16 8 C -0.10 -4.38 5.75 31.98 0.18 -4.19 16 9 C 0.04 1.97 2.87 -10.35 -0.03 1.94 16 10 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 11 C -0.54 -29.13 8.50 25.60 0.22 -28.91 16 12 H 0.05 2.66 7.57 -2.91 -0.02 2.64 16 13 C 0.02 1.32 5.33 84.65 0.45 1.77 16 14 N -0.91 -49.71 12.12 21.45 0.26 -49.45 16 15 Si 0.95 42.59 29.54 68.60 2.03 44.61 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 C 0.12 5.33 6.45 86.73 0.56 5.89 16 20 C -0.14 -3.10 6.33 31.61 0.20 -2.90 16 21 C 0.05 0.89 7.63 72.48 0.55 1.44 16 22 O -0.39 -10.59 11.65 -148.98 -1.74 -12.32 16 23 C 0.05 1.14 5.47 72.49 0.40 1.54 16 24 H 0.06 1.09 7.22 -2.38 -0.02 1.07 16 25 H 0.03 0.68 6.40 -2.39 -0.02 0.67 16 26 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.08 2.43 6.79 -2.39 -0.02 2.41 16 28 H 0.09 2.66 7.17 -2.38 -0.02 2.64 16 29 H 0.04 1.94 8.04 -2.39 -0.02 1.92 16 30 H 0.07 3.32 7.54 -2.38 -0.02 3.30 16 31 H 0.26 13.74 8.31 -92.71 -0.77 12.96 16 32 H 0.04 2.01 7.66 -2.38 -0.02 1.99 16 33 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.12 2.21 8.00 -2.39 -0.02 2.19 16 35 H 0.07 1.90 7.73 -2.39 -0.02 1.88 16 36 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 2.42 7.38 -2.39 -0.02 2.40 16 39 H 0.11 1.96 7.81 -2.39 -0.02 1.94 16 Total: -1.00 -65.30 308.74 2.54 -62.77 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.04 Total: 11.81 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 4.48 Total: 3.40 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.02 Total: -74.83 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -2.99 Total: -47.76 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -65.30 2.54 -62.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402126316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.515 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds