Wall clock time and date at job start Mon Mar 30 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99778 * 2 1 4 4 C 1.50696 * 110.45906 * 64.59395 * 3 2 1 5 5 O 1.21283 * 120.00198 * 223.76855 * 4 3 2 6 6 N 1.34777 * 120.00144 * 43.76082 * 4 3 2 7 7 C 1.47430 * 125.64516 * 355.53879 * 6 4 3 8 8 C 1.54909 * 104.82800 * 204.15902 * 7 6 4 9 9 C 1.55154 * 101.58424 * 322.98884 * 8 7 6 10 10 H 1.08999 * 110.71987 * 277.13932 * 9 8 7 11 11 C 1.50701 * 110.72067 * 153.86705 * 9 8 7 12 12 H 1.08002 * 120.00110 * 246.47821 * 11 9 8 13 13 C 1.37878 * 120.00078 * 66.47852 * 11 9 8 14 14 N 1.31509 * 120.00004 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99933 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47457 * 59.99650 * 15 13 11 17 17 H 1.48499 * 109.47076 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46988 * 299.99533 * 15 13 11 19 19 C 1.47023 * 125.65186 * 175.57059 * 6 4 3 20 20 C 1.54511 * 110.51060 * 187.20013 * 3 2 1 21 21 C 1.54476 * 104.06280 * 118.78316 * 20 3 2 22 22 O 1.44415 * 104.80596 * 23.97613 * 21 20 3 23 23 C 1.44422 * 105.27722 * 319.48804 * 22 21 20 24 24 H 1.08998 * 109.46950 * 175.07511 * 1 2 3 25 25 H 1.09001 * 109.47245 * 295.08031 * 1 2 3 26 26 H 1.09005 * 109.46984 * 55.07634 * 1 2 3 27 27 H 1.08991 * 110.36999 * 322.99699 * 7 6 4 28 28 H 1.09005 * 110.36459 * 85.21248 * 7 6 4 29 29 H 1.08997 * 111.00470 * 81.06676 * 8 7 6 30 30 H 1.09001 * 111.00299 * 204.91753 * 8 7 6 31 31 H 0.97001 * 120.00029 * 180.02562 * 14 13 11 32 32 H 1.08997 * 109.88259 * 298.32866 * 19 6 4 33 33 H 1.09003 * 109.87503 * 59.49442 * 19 6 4 34 34 H 1.09007 * 110.50943 * 237.42770 * 20 3 2 35 35 H 1.08999 * 110.50913 * 0.13296 * 20 3 2 36 36 H 1.09001 * 110.37097 * 142.81759 * 21 20 3 37 37 H 1.09003 * 110.36637 * 265.03244 * 21 20 3 38 38 H 1.09000 * 110.37799 * 281.68033 * 23 22 21 39 39 H 1.09008 * 110.37282 * 159.33830 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6710 2.0331 1.2754 5 8 1.3279 3.1957 1.2374 6 7 1.7488 1.3918 2.4582 7 6 2.0597 -0.0377 2.6417 8 6 1.4367 -0.4062 4.0112 9 6 1.7006 0.8843 4.8311 10 1 2.7119 0.8827 5.2379 11 6 0.6820 1.0347 5.9314 12 1 -0.0282 1.8478 5.9024 13 6 0.6566 0.1342 6.9752 14 7 1.5210 -0.8563 7.0103 15 14 -0.6066 0.3202 8.3388 16 1 -1.9728 0.2399 7.7623 17 1 -0.4249 -0.7672 9.3336 18 1 -0.4266 1.6356 9.0041 19 6 1.5371 2.0015 3.7792 20 6 3.5420 1.2162 -0.1814 21 6 3.8095 1.9808 -1.4967 22 8 2.6876 2.8795 -1.6358 23 6 1.5334 2.1135 -1.2274 24 1 -0.3633 -1.0239 -0.0882 25 1 -0.3634 0.4356 0.9308 26 1 -0.3633 0.5884 -0.8426 27 1 1.6061 -0.6296 1.8469 28 1 3.1386 -0.1919 2.6600 29 1 0.3677 -0.5966 3.9156 30 1 1.9461 -1.2618 4.4547 31 1 1.5029 -1.4900 7.7445 32 1 2.2778 2.7827 3.9498 33 1 0.5327 2.4210 3.8370 34 1 4.0540 1.6983 0.6515 35 1 3.8557 0.1764 -0.2734 36 1 4.7402 2.5436 -1.4259 37 1 3.8491 1.2877 -2.3371 38 1 1.2220 1.4410 -2.0266 39 1 0.7156 2.7785 -0.9495 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402126318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:58 Heat of formation + Delta-G solvation = -136.072896 kcal Electronic energy + Delta-G solvation = -22038.744048 eV Core-core repulsion = 18752.995232 eV Total energy + Delta-G solvation = -3285.748816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08010 -39.88786 -38.37609 -38.17369 -34.97000 -32.91120 -31.92552 -30.13264 -29.95577 -27.78868 -27.16398 -24.87724 -23.70510 -22.70946 -21.54187 -20.42695 -19.06586 -18.42716 -18.03085 -17.15778 -16.97085 -16.61461 -16.50956 -16.11043 -15.89667 -15.48520 -14.93300 -14.59446 -14.39830 -14.33231 -13.91278 -13.50461 -13.15888 -13.06238 -12.96033 -12.89176 -12.72674 -12.66054 -12.34724 -12.28010 -12.18325 -11.72917 -11.45061 -11.37223 -10.98796 -10.86239 -10.54300 -10.39947 -9.65157 -8.17665 -6.27191 1.32933 1.42934 1.43333 1.51082 1.88104 2.34275 2.42572 2.99876 3.14020 3.27131 3.36023 3.62044 4.05561 4.06756 4.17565 4.20723 4.32933 4.35640 4.40996 4.44341 4.44882 4.57716 4.72728 4.74502 4.76383 4.77663 4.82816 4.89345 5.09466 5.23933 5.28861 5.54967 5.59326 5.72395 5.83713 5.86299 6.25407 6.53551 6.77836 6.97259 7.40310 8.91593 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.004819 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.696020 B = 5808.782276 C = 5888.721195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.354 6.354 3 C 0.077 3.923 4 C 0.502 3.498 5 O -0.580 6.580 6 N -0.600 5.600 7 C 0.097 3.903 8 C -0.100 4.100 9 C 0.040 3.960 10 H 0.019 0.981 11 C -0.537 4.537 12 H 0.049 0.951 13 C 0.024 3.976 14 N -0.911 5.911 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.274 1.274 19 C 0.118 3.882 20 C -0.137 4.137 21 C 0.045 3.955 22 O -0.386 6.386 23 C 0.043 3.957 24 H 0.122 0.878 25 H 0.023 0.977 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 -2.336 -16.792 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.272 6.272 3 C 0.033 3.967 4 C 0.290 3.710 5 O -0.461 6.461 6 N -0.332 5.332 7 C -0.024 4.024 8 C -0.138 4.138 9 C 0.021 3.979 10 H 0.037 0.963 11 C -0.576 4.576 12 H 0.068 0.932 13 C -0.176 4.176 14 N -0.549 5.549 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.004 4.004 20 C -0.175 4.175 21 C -0.031 4.031 22 O -0.305 6.305 23 C -0.035 4.035 24 H 0.140 0.860 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.462 -1.806 -16.837 17.112 hybrid contribution -0.879 0.296 1.527 1.787 sum 1.583 -1.509 -15.311 15.466 Atomic orbital electron populations 1.23098 0.79544 1.05296 1.00397 1.87984 1.21347 1.23787 1.94126 1.23094 0.97576 0.84473 0.91528 1.21241 0.77459 0.86840 0.85414 1.90667 1.49421 1.18800 1.87216 1.48764 1.66962 1.12159 1.05291 1.22806 1.00479 0.79804 0.99317 1.22538 0.99077 0.99342 0.92885 1.19616 0.96274 0.90634 0.91346 0.96289 1.21264 1.16654 1.12312 1.07332 0.93230 1.25616 0.97430 0.94793 0.99766 1.70018 1.36702 1.15346 1.32857 0.85691 0.79647 0.77774 0.79022 1.19788 1.20555 1.19984 1.22058 0.99024 0.96994 0.82352 1.23006 0.89446 1.05048 0.99977 1.23703 0.90708 0.92871 0.95853 1.89166 1.17024 1.36811 1.87532 1.23858 0.90408 0.95153 0.94044 0.85964 0.95831 0.91717 0.87266 0.91173 0.93551 0.91290 0.92657 0.93785 0.93845 0.90678 0.85656 0.87076 0.88664 0.87668 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.89 113.37 1.12 1.39 16 2 O -0.35 -8.47 7.61 -148.98 -1.13 -9.60 16 3 C 0.08 2.07 0.70 -10.52 -0.01 2.07 16 4 C 0.50 18.56 5.58 87.66 0.49 19.05 16 5 O -0.58 -25.71 15.99 -3.04 -0.05 -25.76 16 6 N -0.60 -23.23 3.33 -811.79 -2.70 -25.93 16 7 C 0.10 3.37 6.52 86.85 0.57 3.94 16 8 C -0.10 -4.31 5.95 31.99 0.19 -4.12 16 9 C 0.04 1.98 2.78 -10.35 -0.03 1.95 16 10 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 11 C -0.54 -29.11 8.47 25.60 0.22 -28.89 16 12 H 0.05 2.70 7.53 -2.91 -0.02 2.68 16 13 C 0.02 1.30 5.36 84.66 0.45 1.75 16 14 N -0.91 -50.23 12.50 21.45 0.27 -49.97 16 15 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.12 5.34 6.46 86.73 0.56 5.90 16 20 C -0.14 -2.98 6.53 31.61 0.21 -2.78 16 21 C 0.04 0.83 7.63 72.48 0.55 1.39 16 22 O -0.39 -10.42 11.65 -148.98 -1.74 -12.15 16 23 C 0.04 1.08 5.32 72.49 0.39 1.47 16 24 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.02 0.64 7.50 -2.39 -0.02 0.62 16 26 H 0.06 1.15 6.75 -2.38 -0.02 1.14 16 27 H 0.11 3.30 5.00 -2.39 -0.01 3.29 16 28 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 30 H 0.07 3.14 7.77 -2.39 -0.02 3.12 16 31 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.04 2.09 7.63 -2.39 -0.02 2.07 16 34 H 0.07 1.85 7.73 -2.38 -0.02 1.83 16 35 H 0.13 2.12 8.00 -2.39 -0.02 2.10 16 36 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.96 7.66 -2.39 -0.02 1.94 16 39 H 0.09 2.53 7.16 -2.38 -0.02 2.51 16 Total: -1.00 -65.69 311.05 2.42 -63.27 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.04 Total: 12.46 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 4.71 Total: 3.10 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -2.43 Total: -75.90 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -2.92 Total: -47.52 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.69 2.42 -63.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402126318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.803 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds