Wall clock time and date at job start Mon Mar 30 2020 05:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86791 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47187 * 299.99515 * 3 2 1 6 6 H 1.48501 * 109.47446 * 59.99532 * 3 2 1 7 7 C 1.38947 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00107 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00154 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99706 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00448 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47595 * 179.97438 * 12 10 9 14 14 C 1.46905 * 111.10637 * 294.71369 * 13 12 10 15 15 C 1.53180 * 109.93845 * 174.79402 * 14 13 12 16 16 C 1.52887 * 108.88248 * 58.73855 * 15 14 13 17 17 H 1.08993 * 109.46380 * 61.14778 * 16 15 14 18 18 O 1.42786 * 110.64831 * 181.86176 * 16 15 14 19 19 C 1.43192 * 113.18833 * 179.33010 * 18 16 15 20 20 C 1.53001 * 109.66863 * 301.77314 * 19 18 16 21 21 N 1.47238 * 109.58700 * 55.92284 * 20 19 18 22 22 C 1.46785 * 110.23877 * 301.73060 * 21 20 19 23 23 H 1.09006 * 109.44470 * 300.14124 * 22 21 20 24 24 C 1.46996 * 111.00284 * 169.99970 * 13 12 10 25 25 H 0.97001 * 120.00085 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00482 * 359.97438 * 9 7 2 27 27 H 1.09009 * 109.46869 * 59.99479 * 12 10 9 28 28 H 1.08998 * 109.47021 * 300.00203 * 12 10 9 29 29 H 1.08994 * 109.38051 * 54.64940 * 14 13 12 30 30 H 1.09005 * 109.37849 * 294.93653 * 14 13 12 31 31 H 1.09002 * 109.56688 * 298.91455 * 15 14 13 32 32 H 1.08999 * 109.66960 * 178.61395 * 15 14 13 33 33 H 1.08998 * 109.43320 * 61.83272 * 19 18 16 34 34 H 1.09000 * 109.43276 * 181.74692 * 19 18 16 35 35 H 1.09006 * 109.43809 * 175.91876 * 20 19 18 36 36 H 1.09000 * 109.44096 * 295.83524 * 20 19 18 37 37 H 1.00899 * 110.92197 * 178.36841 * 21 20 19 38 38 H 1.09002 * 109.53279 * 65.79157 * 24 13 12 39 39 H 1.09002 * 109.52854 * 305.64344 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 2.9765 -6.0093 -1.2452 15 6 4.0491 -7.1000 -1.1650 16 6 3.3677 -8.4474 -0.9253 17 1 2.7009 -8.6705 -1.7581 18 8 4.3381 -9.4874 -0.8011 19 6 3.7579 -10.7741 -0.5595 20 6 2.9164 -10.7279 0.7174 21 7 1.9053 -9.6636 0.6040 22 6 2.5554 -8.3682 0.3720 23 1 3.2221 -8.1425 1.2044 24 6 1.5135 -7.2582 0.2392 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3907 0.0005 27 1 0.6166 -4.9209 -0.8886 28 1 0.6174 -4.9205 0.8913 29 1 3.4548 -5.0416 -1.3961 30 1 2.3107 -6.2172 -2.0829 31 1 4.7294 -6.8831 -0.3413 32 1 4.6077 -7.1347 -2.1003 33 1 3.1238 -11.0500 -1.4021 34 1 4.5505 -11.5135 -0.4446 35 1 2.4186 -11.6873 0.8587 36 1 3.5633 -10.5258 1.5711 37 1 1.3208 -9.6328 1.4259 38 1 0.8508 -7.4786 -0.5977 39 1 0.9309 -7.1934 1.1582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404072095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:46 Heat of formation + Delta-G solvation = -67.323098 kcal Electronic energy + Delta-G solvation = -21154.147027 eV Core-core repulsion = 17903.672176 eV Total energy + Delta-G solvation = -3250.474850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22177 -38.48778 -36.80440 -34.90051 -33.90268 -32.42943 -31.19716 -30.32832 -27.87754 -26.39428 -24.62305 -23.40049 -22.78421 -20.97252 -19.94654 -19.15643 -17.85021 -16.76439 -16.57749 -15.92624 -15.47059 -15.35284 -14.73617 -14.59124 -14.41221 -14.16020 -14.08889 -13.55015 -13.37784 -13.19283 -12.85339 -12.35118 -11.83115 -11.68262 -11.45988 -11.35583 -11.24258 -11.07341 -11.00023 -10.66555 -10.35721 -10.29703 -10.21740 -9.68426 -9.47165 -8.71345 -8.44453 -7.97491 -7.83953 -6.41361 -3.82020 3.16771 3.27463 3.34562 3.61143 3.63310 3.90662 4.15503 4.33041 4.61040 4.72627 4.89532 4.95385 5.04905 5.10928 5.18940 5.25534 5.33683 5.37763 5.48258 5.56421 5.64084 5.72854 5.74855 5.84602 5.92768 5.94842 6.06570 6.27393 6.38521 6.49221 6.64540 7.01573 7.10133 7.27383 7.41989 7.56072 8.07236 8.62272 9.18762 9.54984 10.06650 10.76471 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051407 B = 0.003638 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.544566 B = 7694.681854 C = 8035.583118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.049 3.951 13 N -0.518 5.518 14 C 0.056 3.944 15 C -0.104 4.104 16 C 0.097 3.903 17 H 0.061 0.939 18 O -0.380 6.380 19 C 0.062 3.938 20 C 0.021 3.979 21 N -0.684 5.684 22 C 0.059 3.941 23 H 0.059 0.941 24 C 0.067 3.933 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.345 0.655 38 H 0.040 0.960 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 -18.700 -0.464 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.082 4.082 13 N -0.243 5.243 14 C -0.072 4.072 15 C -0.143 4.143 16 C 0.039 3.961 17 H 0.079 0.921 18 O -0.299 6.299 19 C -0.015 4.015 20 C -0.108 4.108 21 N -0.316 5.316 22 C -0.052 4.052 23 H 0.077 0.923 24 C -0.062 4.062 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.163 0.837 38 H 0.058 0.942 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.943 -18.541 -0.770 18.659 hybrid contribution -0.885 0.745 0.396 1.223 sum 1.057 -17.797 -0.374 17.832 Atomic orbital electron populations 1.69622 1.05942 1.28037 1.50746 1.25259 0.95629 0.99722 0.97371 0.85804 0.79730 0.81157 0.77681 1.19201 1.20789 1.20778 1.19754 0.93400 0.82181 1.47394 0.87825 1.41873 1.09199 1.04583 1.64420 1.19731 0.88417 0.84533 0.84439 1.90486 1.13661 1.86848 1.55076 1.21809 0.93801 0.90962 1.01634 1.61331 1.25048 1.01176 1.36755 1.22278 0.94852 1.01262 0.88783 1.21531 0.98604 0.90879 1.03246 1.22230 0.89769 0.88372 0.95741 0.92148 1.88019 1.33066 1.16221 1.92597 1.22616 0.97010 0.85792 0.96079 1.22608 0.94211 0.95816 0.98193 1.60701 1.21882 1.04108 1.44879 1.22065 0.95732 0.88579 0.98781 0.92329 1.21926 0.94588 0.88428 1.01265 0.91943 0.77494 0.93337 0.89283 0.86933 0.95732 0.90072 0.90605 0.92575 0.88673 0.89720 0.94153 0.83704 0.94161 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 10 C 0.44 10.36 7.46 -10.99 -0.08 10.28 16 11 O -0.58 -15.31 13.86 5.54 0.08 -15.24 16 12 C 0.05 0.88 5.46 -4.98 -0.03 0.85 16 13 N -0.52 -8.72 4.39 -235.99 -1.04 -9.76 16 14 C 0.06 0.92 5.11 -3.73 -0.02 0.90 16 15 C -0.10 -1.54 5.81 -26.70 -0.16 -1.69 16 16 C 0.10 1.32 2.65 -26.65 -0.07 1.25 16 17 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 18 O -0.38 -5.13 10.55 -35.23 -0.37 -5.51 16 19 C 0.06 0.62 6.98 37.16 0.26 0.88 16 20 C 0.02 0.20 6.74 -3.64 -0.02 0.17 16 21 N -0.68 -7.20 6.64 -106.50 -0.71 -7.91 16 22 C 0.06 0.76 2.55 -67.73 -0.17 0.58 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 C 0.07 0.90 5.11 -3.86 -0.02 0.88 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 27 H 0.05 0.79 8.13 -51.92 -0.42 0.37 16 28 H 0.09 1.43 7.99 -51.93 -0.42 1.01 16 29 H 0.11 2.24 5.74 -51.93 -0.30 1.94 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.34 3.07 8.85 -39.29 -0.35 2.72 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.93 8.02 -51.93 -0.42 0.51 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -30.85 311.24 -8.22 -39.07 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.96 Total: 10.46 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.55 Total: 6.19 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -1.08 Total: -55.64 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.30 Total: -20.74 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.85 -8.22 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.254 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds