Wall clock time and date at job start Mon Mar 30 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86791 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47187 * 299.99515 * 3 2 1 6 6 H 1.48501 * 109.47446 * 59.99532 * 3 2 1 7 7 C 1.38947 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00107 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00154 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99706 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00448 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47595 * 179.97438 * 12 10 9 14 14 C 1.46905 * 111.10637 * 294.71369 * 13 12 10 15 15 C 1.53180 * 109.93845 * 174.79402 * 14 13 12 16 16 C 1.52887 * 108.88248 * 58.73855 * 15 14 13 17 17 H 1.08993 * 109.46380 * 61.14778 * 16 15 14 18 18 O 1.42786 * 110.64831 * 181.86176 * 16 15 14 19 19 C 1.43192 * 113.18833 * 179.33010 * 18 16 15 20 20 C 1.53001 * 109.66863 * 301.77314 * 19 18 16 21 21 N 1.47238 * 109.58700 * 55.92284 * 20 19 18 22 22 C 1.46785 * 110.23877 * 301.73060 * 21 20 19 23 23 H 1.09006 * 109.44470 * 300.14124 * 22 21 20 24 24 C 1.46996 * 111.00284 * 169.99970 * 13 12 10 25 25 H 0.97001 * 120.00085 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00482 * 359.97438 * 9 7 2 27 27 H 1.09009 * 109.46869 * 59.99479 * 12 10 9 28 28 H 1.08998 * 109.47021 * 300.00203 * 12 10 9 29 29 H 1.08994 * 109.38051 * 54.64940 * 14 13 12 30 30 H 1.09005 * 109.37849 * 294.93653 * 14 13 12 31 31 H 1.09002 * 109.56688 * 298.91455 * 15 14 13 32 32 H 1.08999 * 109.66960 * 178.61395 * 15 14 13 33 33 H 1.08998 * 109.43320 * 61.83272 * 19 18 16 34 34 H 1.09000 * 109.43276 * 181.74692 * 19 18 16 35 35 H 1.09006 * 109.43809 * 175.91876 * 20 19 18 36 36 H 1.09000 * 109.44096 * 295.83524 * 20 19 18 37 37 H 1.00899 * 110.92197 * 178.36841 * 21 20 19 38 38 H 1.09002 * 109.53279 * 65.79157 * 24 13 12 39 39 H 1.09002 * 109.52854 * 305.64344 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 2.9765 -6.0093 -1.2452 15 6 4.0491 -7.1000 -1.1650 16 6 3.3677 -8.4474 -0.9253 17 1 2.7009 -8.6705 -1.7581 18 8 4.3381 -9.4874 -0.8011 19 6 3.7579 -10.7741 -0.5595 20 6 2.9164 -10.7279 0.7174 21 7 1.9053 -9.6636 0.6040 22 6 2.5554 -8.3682 0.3720 23 1 3.2221 -8.1425 1.2044 24 6 1.5135 -7.2582 0.2392 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3907 0.0005 27 1 0.6166 -4.9209 -0.8886 28 1 0.6174 -4.9205 0.8913 29 1 3.4548 -5.0416 -1.3961 30 1 2.3107 -6.2172 -2.0829 31 1 4.7294 -6.8831 -0.3413 32 1 4.6077 -7.1347 -2.1003 33 1 3.1238 -11.0500 -1.4021 34 1 4.5505 -11.5135 -0.4446 35 1 2.4186 -11.6873 0.8587 36 1 3.5633 -10.5258 1.5711 37 1 1.3208 -9.6328 1.4259 38 1 0.8508 -7.4786 -0.5977 39 1 0.9309 -7.1934 1.1582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404072095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:45 Heat of formation + Delta-G solvation = -93.075688 kcal Electronic energy + Delta-G solvation = -21155.263743 eV Core-core repulsion = 17903.672176 eV Total energy + Delta-G solvation = -3251.591566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30562 -40.13468 -38.16095 -35.97583 -35.73841 -33.70873 -33.15790 -31.38242 -29.19006 -27.60467 -26.33842 -24.56029 -23.93402 -22.01933 -21.05731 -20.94562 -19.84793 -17.95574 -17.60133 -17.39543 -16.66702 -16.51499 -16.43816 -15.77986 -15.73139 -15.57246 -15.49017 -14.92281 -14.65344 -14.41155 -14.07505 -13.75748 -13.48687 -13.16659 -12.88672 -12.69824 -12.49541 -12.39754 -12.31522 -12.12549 -12.09734 -11.79608 -11.47277 -11.34297 -10.63517 -10.26241 -9.98233 -9.57332 -9.22767 -8.45394 -5.93598 1.37181 1.42585 1.56575 2.06651 2.27721 2.54507 2.69736 3.19724 3.22479 3.37856 3.62169 3.81567 3.96830 4.04881 4.16974 4.22750 4.27026 4.33867 4.38112 4.43796 4.49583 4.55232 4.63450 4.68361 4.81491 4.84165 4.91474 4.98047 5.06156 5.22494 5.42849 5.75389 5.87349 6.06899 6.14051 6.18468 6.34060 6.62461 7.14882 7.58324 8.14299 8.72269 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051407 B = 0.003638 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.544566 B = 7694.681854 C = 8035.583118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.613 6.613 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.060 3.940 15 C -0.099 4.099 16 C 0.102 3.898 17 H 0.065 0.935 18 O -0.401 6.401 19 C 0.054 3.946 20 C 0.022 3.978 21 N -0.680 5.680 22 C 0.066 3.934 23 H 0.036 0.964 24 C 0.071 3.929 25 H 0.277 0.723 26 H 0.396 0.604 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.035 0.965 37 H 0.356 0.644 38 H 0.051 0.949 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -20.155 -0.371 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.069 4.069 13 N -0.263 5.263 14 C -0.067 4.067 15 C -0.137 4.137 16 C 0.043 3.957 17 H 0.083 0.917 18 O -0.321 6.321 19 C -0.023 4.023 20 C -0.108 4.108 21 N -0.313 5.313 22 C -0.045 4.045 23 H 0.054 0.946 24 C -0.057 4.057 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.053 0.947 37 H 0.175 0.825 38 H 0.069 0.931 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.833 -20.027 -0.670 20.056 hybrid contribution -0.516 1.092 0.369 1.263 sum 0.318 -18.935 -0.301 18.940 Atomic orbital electron populations 1.69677 1.06788 1.29168 1.50564 1.26009 0.96527 1.02328 0.96398 0.84887 0.78036 0.77233 0.78282 1.19859 1.19625 1.19679 1.19687 0.92670 0.83990 1.49654 0.90347 1.41926 1.09309 1.04643 1.65255 1.20756 0.88308 0.85915 0.82185 1.90470 1.15689 1.87717 1.56066 1.21685 0.93400 0.88141 1.03724 1.61267 1.25603 1.02442 1.36977 1.22099 0.95354 0.99820 0.89447 1.21423 0.97856 0.91580 1.02854 1.22081 0.89641 0.87707 0.96231 0.91741 1.87987 1.33758 1.17489 1.92822 1.22909 0.98089 0.84557 0.96700 1.22696 0.94031 0.96535 0.97506 1.60703 1.22018 1.02987 1.45637 1.21878 0.95230 0.89732 0.97613 0.94551 1.21958 0.94660 0.86684 1.02365 0.91350 0.77001 0.91208 0.86889 0.90858 0.94301 0.92268 0.89711 0.92007 0.86489 0.86854 0.94655 0.82464 0.93084 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.38 5.29 -306.98 -1.62 -31.00 16 10 C 0.44 20.96 7.46 87.65 0.65 21.62 16 11 O -0.61 -33.84 13.86 -3.09 -0.04 -33.89 16 12 C 0.06 2.12 5.46 85.56 0.47 2.59 16 13 N -0.54 -17.69 4.39 -900.54 -3.95 -21.65 16 14 C 0.06 2.02 5.11 86.36 0.44 2.46 16 15 C -0.10 -2.94 5.81 30.62 0.18 -2.77 16 16 C 0.10 2.64 2.65 30.64 0.08 2.72 16 17 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 18 O -0.40 -10.32 10.55 -148.98 -1.57 -11.90 16 19 C 0.05 0.94 6.98 71.98 0.50 1.44 16 20 C 0.02 0.34 6.74 86.24 0.58 0.92 16 21 N -0.68 -12.49 6.64 -490.86 -3.26 -15.75 16 22 C 0.07 1.61 2.55 44.96 0.11 1.72 16 23 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 24 C 0.07 1.77 5.11 86.23 0.44 2.21 16 25 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 27 H 0.07 2.14 8.13 -2.38 -0.02 2.12 16 28 H 0.11 3.38 7.99 -2.39 -0.02 3.36 16 29 H 0.07 3.04 5.74 -2.39 -0.01 3.03 16 30 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.36 5.28 8.85 -89.69 -0.79 4.48 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.99 8.02 -2.39 -0.02 1.97 16 Total: -1.00 -67.58 311.24 -3.86 -71.44 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.46 Total: 32.27 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 4.74 Total: 14.72 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -8.55 Total: -117.78 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.62 Total: -45.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.58 -3.86 -71.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.638 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds