Wall clock time and date at job start Mon Mar 30 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47088 * 119.99825 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46757 * 111.00047 * 66.04814 * 13 12 10 15 15 C 1.53180 * 109.90222 * 185.23112 * 14 13 12 16 16 C 1.52890 * 108.88131 * 301.26825 * 15 14 13 17 17 H 1.09005 * 109.45915 * 298.85082 * 16 15 14 18 18 O 1.42775 * 110.68040 * 178.11688 * 16 15 14 19 19 C 1.43189 * 113.18869 * 180.60101 * 18 16 15 20 20 C 1.53003 * 109.63393 * 58.29763 * 19 18 16 21 21 N 1.47163 * 109.66732 * 304.11892 * 20 19 18 22 22 C 1.46792 * 110.28241 * 58.09715 * 21 20 19 23 23 H 1.09000 * 109.36849 * 60.03760 * 22 21 20 24 24 C 1.46994 * 110.99934 * 190.78847 * 13 12 10 25 25 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 29 29 H 1.09000 * 109.39796 * 305.36484 * 14 13 12 30 30 H 1.09006 * 109.40187 * 65.18700 * 14 13 12 31 31 H 1.09000 * 109.56412 * 61.08247 * 15 14 13 32 32 H 1.08997 * 109.56985 * 181.44364 * 15 14 13 33 33 H 1.08993 * 109.47617 * 298.23561 * 19 18 16 34 34 H 1.09000 * 109.40380 * 178.31208 * 19 18 16 35 35 H 1.09000 * 109.43965 * 184.05852 * 20 19 18 36 36 H 1.09000 * 109.41141 * 64.16200 * 20 19 18 37 37 H 1.00895 * 110.99965 * 294.65186 * 21 20 19 38 38 H 1.09007 * 109.52959 * 294.21398 * 24 13 12 39 39 H 1.08996 * 109.53216 * 54.43328 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9632 -6.0182 1.2505 15 6 4.0377 -7.1071 1.1718 16 6 3.3600 -8.4531 0.9137 17 1 2.6851 -8.6839 1.7380 18 8 4.3321 -9.4915 0.7900 19 6 3.7549 -10.7765 0.5331 20 6 2.9263 -10.7203 -0.7519 21 7 1.9145 -9.6573 -0.6426 22 6 2.5607 -8.3635 -0.3908 23 1 3.2354 -8.1301 -1.2145 24 6 1.5164 -7.2557 -0.2591 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0002 27 1 0.6170 -4.9209 0.8886 28 1 0.6176 -4.9205 -0.8913 29 1 3.4389 -5.0513 1.4143 30 1 2.2895 -6.2353 2.0795 31 1 4.7258 -6.8826 0.3569 32 1 4.5851 -7.1485 2.1134 33 1 3.1125 -11.0596 1.3668 34 1 4.5493 -11.5143 0.4204 35 1 2.4304 -11.6786 -0.9060 36 1 3.5821 -10.5113 -1.5970 37 1 1.2413 -9.8715 0.0777 38 1 0.8456 -7.4839 0.5693 39 1 0.9438 -7.1828 -1.1836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404072100.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:48 Heat of formation + Delta-G solvation = -67.713409 kcal Electronic energy + Delta-G solvation = -21167.581078 eV Core-core repulsion = 17917.089303 eV Total energy + Delta-G solvation = -3250.491775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41694 -38.52723 -36.85267 -34.83907 -33.89873 -32.47984 -31.19493 -30.37195 -27.85035 -26.24311 -24.60880 -23.40372 -22.69500 -21.47808 -20.17731 -19.16000 -17.85092 -16.73210 -16.45812 -15.93461 -15.68873 -15.47912 -14.82596 -14.71595 -14.32099 -14.18521 -13.68577 -13.63868 -13.37642 -12.92212 -12.83478 -12.34588 -11.87289 -11.67958 -11.49824 -11.36314 -11.18945 -11.15499 -11.00034 -10.76298 -10.61946 -10.42791 -10.23754 -10.20179 -9.45192 -8.47098 -8.39697 -7.96964 -7.84504 -6.40575 -3.81389 3.21097 3.26796 3.31012 3.53293 3.63571 3.91447 4.16774 4.32322 4.48324 4.73641 4.78337 4.91480 4.94333 5.00768 5.10465 5.25361 5.29600 5.30767 5.38357 5.52951 5.60934 5.69548 5.78286 5.78451 5.90139 6.00062 6.03297 6.27483 6.34286 6.46243 6.63606 6.99251 7.04477 7.26485 7.39978 7.56252 8.07369 8.62983 9.19181 9.55565 10.07364 10.77116 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051696 B = 0.003636 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.498164 B = 7699.635830 C = 8033.346736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.049 3.951 13 N -0.516 5.516 14 C 0.056 3.944 15 C -0.101 4.101 16 C 0.056 3.944 17 H 0.051 0.949 18 O -0.375 6.375 19 C 0.021 3.979 20 C 0.023 3.977 21 N -0.677 5.677 22 C 0.061 3.939 23 H 0.101 0.899 24 C 0.067 3.933 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.022 0.978 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.337 0.663 38 H 0.029 0.971 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -18.904 1.849 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.082 4.082 13 N -0.241 5.241 14 C -0.071 4.071 15 C -0.139 4.139 16 C -0.004 4.004 17 H 0.068 0.932 18 O -0.293 6.293 19 C -0.057 4.057 20 C -0.107 4.107 21 N -0.305 5.305 22 C -0.049 4.049 23 H 0.119 0.881 24 C -0.061 4.061 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.040 0.960 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.047 0.953 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.834 -18.525 0.781 18.631 hybrid contribution -0.889 0.430 1.584 1.867 sum 0.945 -18.094 2.364 18.273 Atomic orbital electron populations 1.69606 1.05936 1.28247 1.50599 1.25253 0.95623 0.99703 0.97330 0.85921 0.78758 0.80482 0.79079 1.19874 1.21014 1.19930 1.19653 0.93349 0.82216 1.47648 0.87936 1.41857 1.09187 1.04562 1.64423 1.19728 0.88418 0.84524 0.84466 1.90487 1.13657 1.86853 1.55093 1.21819 0.93777 0.90964 1.01663 1.61273 1.25648 1.01343 1.35817 1.22250 0.94908 1.01227 0.88750 1.21480 0.98657 0.90643 1.03132 1.22886 0.91375 0.89201 0.96923 0.93152 1.88093 1.32740 1.16099 1.92418 1.23262 0.98973 0.86302 0.97196 1.22655 0.94448 0.95574 0.98015 1.60913 1.15837 1.01873 1.51900 1.22153 0.96067 0.88894 0.97777 0.88055 1.21956 0.94399 0.88535 1.01236 0.91836 0.77488 0.93423 0.89138 0.86982 0.95985 0.89822 0.90934 0.93484 0.88468 0.89641 0.89750 0.84568 0.95294 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.18 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.35 7.46 -10.98 -0.08 10.27 16 11 O -0.58 -15.31 13.92 5.55 0.08 -15.24 16 12 C 0.05 0.87 5.46 -4.97 -0.03 0.84 16 13 N -0.52 -8.59 4.37 -236.11 -1.03 -9.63 16 14 C 0.06 0.91 5.10 -3.81 -0.02 0.90 16 15 C -0.10 -1.45 5.82 -26.69 -0.16 -1.61 16 16 C 0.06 0.71 2.64 -26.65 -0.07 0.64 16 17 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 18 O -0.37 -4.86 10.55 -35.23 -0.37 -5.23 16 19 C 0.02 0.20 6.99 37.16 0.26 0.46 16 20 C 0.02 0.20 6.74 -3.68 -0.02 0.18 16 21 N -0.68 -6.98 6.65 -106.56 -0.71 -7.69 16 22 C 0.06 0.77 2.56 -67.73 -0.17 0.60 16 23 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 24 C 0.07 0.90 5.10 -3.87 -0.02 0.88 16 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 27 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.09 1.46 7.98 -51.93 -0.41 1.04 16 29 H 0.11 2.20 5.80 -51.93 -0.30 1.90 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.34 3.02 8.82 -39.29 -0.35 2.67 16 38 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.09 1.13 8.02 -51.93 -0.42 0.71 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -30.64 311.26 -8.22 -38.86 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.96 Total: 11.03 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.55 Total: 5.21 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -1.07 Total: -55.33 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.29 Total: -20.46 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.64 -8.22 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072100.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.855 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds