Wall clock time and date at job start Mon Mar 30 2020 05:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47088 * 119.99825 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46757 * 111.00047 * 66.04814 * 13 12 10 15 15 C 1.53180 * 109.90222 * 185.23112 * 14 13 12 16 16 C 1.52890 * 108.88131 * 301.26825 * 15 14 13 17 17 H 1.09005 * 109.45915 * 298.85082 * 16 15 14 18 18 O 1.42775 * 110.68040 * 178.11688 * 16 15 14 19 19 C 1.43189 * 113.18869 * 180.60101 * 18 16 15 20 20 C 1.53003 * 109.63393 * 58.29763 * 19 18 16 21 21 N 1.47163 * 109.66732 * 304.11892 * 20 19 18 22 22 C 1.46792 * 110.28241 * 58.09715 * 21 20 19 23 23 H 1.09000 * 109.36849 * 60.03760 * 22 21 20 24 24 C 1.46994 * 110.99934 * 190.78847 * 13 12 10 25 25 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 29 29 H 1.09000 * 109.39796 * 305.36484 * 14 13 12 30 30 H 1.09006 * 109.40187 * 65.18700 * 14 13 12 31 31 H 1.09000 * 109.56412 * 61.08247 * 15 14 13 32 32 H 1.08997 * 109.56985 * 181.44364 * 15 14 13 33 33 H 1.08993 * 109.47617 * 298.23561 * 19 18 16 34 34 H 1.09000 * 109.40380 * 178.31208 * 19 18 16 35 35 H 1.09000 * 109.43965 * 184.05852 * 20 19 18 36 36 H 1.09000 * 109.41141 * 64.16200 * 20 19 18 37 37 H 1.00895 * 110.99965 * 294.65186 * 21 20 19 38 38 H 1.09007 * 109.52959 * 294.21398 * 24 13 12 39 39 H 1.08996 * 109.53216 * 54.43328 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9632 -6.0182 1.2505 15 6 4.0377 -7.1071 1.1718 16 6 3.3600 -8.4531 0.9137 17 1 2.6851 -8.6839 1.7380 18 8 4.3321 -9.4915 0.7900 19 6 3.7549 -10.7765 0.5331 20 6 2.9263 -10.7203 -0.7519 21 7 1.9145 -9.6573 -0.6426 22 6 2.5607 -8.3635 -0.3908 23 1 3.2354 -8.1301 -1.2145 24 6 1.5164 -7.2557 -0.2591 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0002 27 1 0.6170 -4.9209 0.8886 28 1 0.6176 -4.9205 -0.8913 29 1 3.4389 -5.0513 1.4143 30 1 2.2895 -6.2353 2.0795 31 1 4.7258 -6.8826 0.3569 32 1 4.5851 -7.1485 2.1134 33 1 3.1125 -11.0596 1.3668 34 1 4.5493 -11.5143 0.4204 35 1 2.4304 -11.6786 -0.9060 36 1 3.5821 -10.5113 -1.5970 37 1 1.2413 -9.8715 0.0777 38 1 0.8456 -7.4839 0.5693 39 1 0.9438 -7.1828 -1.1836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404072100.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:47 Heat of formation + Delta-G solvation = -93.346044 kcal Electronic energy + Delta-G solvation = -21168.692592 eV Core-core repulsion = 17917.089303 eV Total energy + Delta-G solvation = -3251.603290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44041 -40.17188 -38.20472 -35.94922 -35.67259 -33.72503 -33.15960 -31.40339 -29.17314 -27.42717 -26.28943 -24.53346 -23.80807 -22.41349 -21.33952 -20.93498 -19.84863 -17.93295 -17.59933 -17.24577 -16.66106 -16.57114 -16.43669 -16.09387 -15.73972 -15.65493 -15.21996 -14.79933 -14.67312 -14.14154 -13.98635 -13.66269 -13.46448 -13.14687 -12.89048 -12.66345 -12.46109 -12.41858 -12.27093 -12.16873 -12.11193 -11.82239 -11.75396 -11.41256 -11.15182 -10.26401 -9.98136 -9.30578 -9.16213 -8.44781 -5.93196 1.40663 1.42480 1.53175 2.07534 2.28089 2.55293 2.66576 3.21525 3.26753 3.36680 3.58048 3.78307 3.88122 4.03666 4.16621 4.18429 4.21805 4.28443 4.36050 4.43027 4.46984 4.54639 4.60442 4.72002 4.74118 4.90070 4.95202 4.99947 5.03396 5.21519 5.42604 5.77935 5.87587 6.07622 6.12087 6.19592 6.35656 6.62993 7.15057 7.58855 8.14924 8.72439 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051696 B = 0.003636 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.498164 B = 7699.635830 C = 8033.346736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.062 3.938 15 C -0.096 4.096 16 C 0.063 3.937 17 H 0.065 0.935 18 O -0.399 6.399 19 C 0.017 3.983 20 C 0.025 3.975 21 N -0.676 5.676 22 C 0.070 3.930 23 H 0.074 0.926 24 C 0.072 3.928 25 H 0.277 0.723 26 H 0.396 0.604 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.349 0.651 38 H 0.050 0.950 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -20.506 2.183 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.069 4.069 13 N -0.263 5.263 14 C -0.066 4.066 15 C -0.135 4.135 16 C 0.003 3.997 17 H 0.083 0.917 18 O -0.318 6.318 19 C -0.061 4.061 20 C -0.105 4.105 21 N -0.306 5.306 22 C -0.041 4.041 23 H 0.092 0.908 24 C -0.056 4.056 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.168 0.832 38 H 0.068 0.932 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.652 -20.161 1.116 20.202 hybrid contribution -0.492 0.821 1.468 1.753 sum 0.160 -19.340 2.584 19.513 Atomic orbital electron populations 1.69667 1.06792 1.29302 1.50444 1.26006 0.96523 1.02321 0.96358 0.85012 0.77771 0.76784 0.78915 1.19822 1.19518 1.19705 1.19621 0.92694 0.84030 1.49864 0.90333 1.41916 1.09299 1.04633 1.65276 1.20772 0.88317 0.85928 0.82180 1.90470 1.15697 1.87732 1.56077 1.21688 0.93385 0.88148 1.03725 1.61190 1.26252 1.02601 1.36222 1.22063 0.95430 0.99728 0.89385 1.21372 0.97885 0.91634 1.02604 1.22733 0.91193 0.88304 0.97429 0.91719 1.88056 1.33616 1.17484 1.92652 1.23505 0.99918 0.84861 0.97825 1.22717 0.94171 0.96217 0.97380 1.60866 1.16254 1.01156 1.52338 1.21916 0.95487 0.90007 0.96658 0.90820 1.21968 0.94584 0.86831 1.02199 0.91332 0.77003 0.91090 0.86995 0.91072 0.94208 0.92302 0.90143 0.91958 0.86771 0.86765 0.91013 0.83223 0.93157 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 2 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 3 Si 0.99 43.16 29.55 68.60 2.03 45.18 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.43 5.29 -306.98 -1.62 -31.06 16 10 C 0.44 20.98 7.46 87.66 0.65 21.63 16 11 O -0.61 -33.91 13.92 -3.07 -0.04 -33.96 16 12 C 0.06 2.12 5.46 85.56 0.47 2.58 16 13 N -0.54 -17.52 4.37 -900.91 -3.94 -21.46 16 14 C 0.06 2.01 5.10 86.39 0.44 2.45 16 15 C -0.10 -2.80 5.82 30.62 0.18 -2.62 16 16 C 0.06 1.51 2.64 30.64 0.08 1.60 16 17 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 18 O -0.40 -9.73 10.55 -148.98 -1.57 -11.30 16 19 C 0.02 0.26 6.99 71.98 0.50 0.76 16 20 C 0.02 0.36 6.74 86.25 0.58 0.95 16 21 N -0.68 -12.14 6.65 -491.05 -3.27 -15.40 16 22 C 0.07 1.66 2.56 44.96 0.12 1.78 16 23 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 24 C 0.07 1.76 5.10 86.22 0.44 2.20 16 25 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 27 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 28 H 0.11 3.39 7.98 -2.39 -0.02 3.37 16 29 H 0.07 2.92 5.80 -2.39 -0.01 2.91 16 30 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.35 4.98 8.82 -89.70 -0.79 4.19 16 38 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.09 2.17 8.02 -2.39 -0.02 2.15 16 Total: -1.00 -67.61 311.26 -3.85 -71.47 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.46 Total: 33.05 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 4.74 Total: 13.00 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -8.55 Total: -117.43 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.61 Total: -45.26 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.61 -3.85 -71.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072100.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.880 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds