Wall clock time and date at job start Mon Mar 30 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99667 * 2 1 4 4 H 1.48502 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47181 * 299.99541 * 3 2 1 6 6 H 1.48496 * 109.47218 * 59.99829 * 3 2 1 7 7 C 1.38952 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00041 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99614 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99373 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00556 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99833 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47460 * 179.97438 * 12 10 9 14 14 C 1.46867 * 110.99574 * 66.04694 * 13 12 10 15 15 C 1.53034 * 109.45655 * 185.97873 * 14 13 12 16 16 C 1.53036 * 109.35449 * 300.82638 * 15 14 13 17 17 H 1.09002 * 109.66293 * 177.46404 * 16 15 14 18 18 O 1.42956 * 109.47926 * 297.65112 * 16 15 14 19 19 C 1.43026 * 113.74757 * 178.38545 * 18 16 15 20 20 C 1.53095 * 109.27529 * 301.42580 * 19 18 16 21 21 N 1.47011 * 109.27259 * 56.81132 * 20 19 18 22 22 C 1.47035 * 110.72663 * 301.32934 * 21 20 19 23 23 H 1.09000 * 109.85284 * 178.85968 * 22 21 20 24 24 C 1.46824 * 111.00233 * 190.20803 * 13 12 10 25 25 H 0.96994 * 120.00226 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00234 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47230 * 59.99776 * 12 10 9 28 28 H 1.09003 * 109.47159 * 300.00233 * 12 10 9 29 29 H 1.09002 * 109.47499 * 305.97642 * 14 13 12 30 30 H 1.09005 * 109.47564 * 65.98715 * 14 13 12 31 31 H 1.09003 * 109.48637 * 60.78454 * 15 14 13 32 32 H 1.08997 * 109.49599 * 180.85475 * 15 14 13 33 33 H 1.09001 * 109.50436 * 61.36473 * 19 18 16 34 34 H 1.08994 * 109.50386 * 181.48473 * 19 18 16 35 35 H 1.08991 * 109.50699 * 176.75783 * 20 19 18 36 36 H 1.09005 * 109.50273 * 296.87599 * 20 19 18 37 37 H 1.00896 * 111.00315 * 177.56843 * 21 20 19 38 38 H 1.09003 * 109.44709 * 294.16790 * 24 13 12 39 39 H 1.09001 * 109.44840 * 54.07940 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2440 -4.8629 0.0022 13 7 2.1986 -5.9794 0.0027 14 6 2.9636 -6.0171 1.2558 15 6 4.0456 -7.0952 1.1602 16 6 3.3876 -8.4525 0.9014 17 1 4.1563 -9.2169 0.7877 18 8 2.5389 -8.7883 2.0017 19 6 1.8467 -10.0291 1.8373 20 6 0.9946 -9.9681 0.5669 21 7 1.8574 -9.6554 -0.5815 22 6 2.5503 -8.3745 -0.3783 23 1 3.2007 -8.1667 -1.2280 24 6 1.5152 -7.2561 -0.2397 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.6176 -4.9213 -0.8880 28 1 0.6169 -4.9201 0.8919 29 1 3.4311 -5.0471 1.4254 30 1 2.2934 -6.2474 2.0840 31 1 4.7240 -6.8578 0.3408 32 1 4.6039 -7.1341 2.0955 33 1 2.5695 -10.8405 1.7521 34 1 1.2029 -10.2036 2.6993 35 1 0.5104 -10.9313 0.4068 36 1 0.2363 -9.1923 0.6743 37 1 1.3278 -9.6477 -1.4403 38 1 0.8518 -7.4772 0.5966 39 1 0.9309 -7.1866 -1.1572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404072103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:50 Heat of formation + Delta-G solvation = -64.411047 kcal Electronic energy + Delta-G solvation = -21471.097108 eV Core-core repulsion = 18220.748534 eV Total energy + Delta-G solvation = -3250.348574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46480 -38.36931 -36.44730 -35.00360 -33.87090 -32.46614 -31.18338 -29.94655 -27.83106 -26.54437 -24.61055 -23.66510 -22.78473 -21.55120 -19.15182 -18.88055 -17.83483 -16.91848 -16.16778 -16.13207 -15.73354 -15.59561 -14.76015 -14.55870 -14.21957 -13.97505 -13.82597 -13.58456 -13.29078 -13.07778 -12.80506 -12.35741 -11.99115 -11.75981 -11.53324 -11.44519 -11.16655 -11.07834 -10.74347 -10.61163 -10.34077 -10.25030 -10.20855 -9.65269 -9.45590 -8.80640 -8.30730 -7.95258 -7.78458 -6.40136 -3.80774 3.17477 3.27913 3.35168 3.66363 3.83442 3.92745 4.10812 4.29498 4.63744 4.79628 4.92825 4.93794 5.04113 5.06237 5.25864 5.26989 5.35301 5.37034 5.53636 5.59453 5.64743 5.74526 5.81724 5.91318 5.96517 6.00204 6.05252 6.29750 6.43876 6.55984 6.64393 7.02896 7.14147 7.33641 7.47373 7.57099 8.08647 8.63819 9.20029 9.56580 10.08401 10.77826 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044818 B = 0.003921 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.600797 B = 7139.893944 C = 7379.870514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.446 3.554 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.510 5.510 14 C 0.054 3.946 15 C -0.105 4.105 16 C 0.098 3.902 17 H 0.064 0.936 18 O -0.378 6.378 19 C 0.064 3.936 20 C 0.014 3.986 21 N -0.680 5.680 22 C 0.060 3.940 23 H 0.102 0.898 24 C 0.029 3.971 25 H 0.270 0.730 26 H 0.392 0.608 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.345 0.655 38 H 0.037 0.963 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 -18.410 1.249 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.202 5.202 10 C 0.231 3.769 11 O -0.460 6.460 12 C -0.084 4.084 13 N -0.235 5.235 14 C -0.073 4.073 15 C -0.143 4.143 16 C 0.040 3.960 17 H 0.081 0.919 18 O -0.297 6.297 19 C -0.014 4.014 20 C -0.116 4.116 21 N -0.311 5.311 22 C -0.051 4.051 23 H 0.120 0.880 24 C -0.101 4.101 25 H 0.080 0.920 26 H 0.225 0.775 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.163 0.837 38 H 0.055 0.945 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.460 -18.444 1.260 18.545 hybrid contribution -1.793 1.135 0.179 2.129 sum -0.332 -17.309 1.439 17.372 Atomic orbital electron populations 1.69620 1.05956 1.28010 1.50854 1.25258 0.95619 0.99707 0.97405 0.85806 0.79726 0.81175 0.77675 1.19201 1.20773 1.20799 1.19753 0.93392 0.82193 1.47346 0.87833 1.41876 1.09177 1.04605 1.64554 1.19719 0.88403 0.84498 0.84291 1.90480 1.13654 1.86882 1.55010 1.21828 0.93975 0.91324 1.01303 1.61532 1.24950 1.00881 1.36126 1.22195 0.95202 1.00978 0.88911 1.21587 0.98084 0.91609 1.02992 1.22202 0.91341 0.97486 0.84966 0.91856 1.88010 1.60893 1.38898 1.41928 1.22589 0.95037 0.86999 0.96733 1.22646 0.95335 1.01288 0.92328 1.60865 1.33329 1.31860 1.05003 1.22224 0.96203 0.86759 0.99892 0.87968 1.22725 0.96280 0.90646 1.00437 0.91964 0.77540 0.89622 0.93615 0.87806 0.95218 0.89331 0.90699 0.92632 0.88852 0.89934 0.93783 0.83664 0.94520 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.48 5.29 -10.96 -0.06 -14.53 16 10 C 0.45 10.63 7.46 -10.99 -0.08 10.55 16 11 O -0.58 -15.50 13.92 5.55 0.08 -15.42 16 12 C 0.05 0.88 5.45 -4.98 -0.03 0.85 16 13 N -0.51 -8.82 4.39 -236.12 -1.04 -9.86 16 14 C 0.05 0.94 4.97 -3.82 -0.02 0.92 16 15 C -0.10 -1.49 5.82 -26.69 -0.16 -1.65 16 16 C 0.10 1.27 3.02 -26.64 -0.08 1.19 16 17 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 18 O -0.38 -5.06 9.35 -35.23 -0.33 -5.39 16 19 C 0.06 0.64 7.01 37.21 0.26 0.90 16 20 C 0.01 0.13 6.36 -3.71 -0.02 0.10 16 21 N -0.68 -6.91 6.71 -106.41 -0.71 -7.63 16 22 C 0.06 0.73 3.18 -67.56 -0.21 0.52 16 23 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 24 C 0.03 0.41 4.42 -3.85 -0.02 0.39 16 25 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 27 H 0.09 1.44 7.98 -51.93 -0.41 1.03 16 28 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 29 H 0.10 2.13 5.80 -51.93 -0.30 1.83 16 30 H 0.03 0.52 7.76 -51.93 -0.40 0.12 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.45 6.32 -51.93 -0.33 0.12 16 37 H 0.35 2.98 8.88 -39.29 -0.35 2.63 16 38 H 0.04 0.53 5.97 -51.93 -0.31 0.22 16 39 H 0.07 0.88 8.01 -51.93 -0.42 0.47 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -31.03 305.66 -8.09 -39.12 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.74 Total: 11.20 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.60 Total: 5.79 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -1.09 Total: -56.04 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.25 Total: -20.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.03 -8.09 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.287 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds