Wall clock time and date at job start Mon Mar 30 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99667 * 2 1 4 4 H 1.48502 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47181 * 299.99541 * 3 2 1 6 6 H 1.48496 * 109.47218 * 59.99829 * 3 2 1 7 7 C 1.38952 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00041 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99614 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99373 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00556 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99833 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47460 * 179.97438 * 12 10 9 14 14 C 1.46867 * 110.99574 * 66.04694 * 13 12 10 15 15 C 1.53034 * 109.45655 * 185.97873 * 14 13 12 16 16 C 1.53036 * 109.35449 * 300.82638 * 15 14 13 17 17 H 1.09002 * 109.66293 * 177.46404 * 16 15 14 18 18 O 1.42956 * 109.47926 * 297.65112 * 16 15 14 19 19 C 1.43026 * 113.74757 * 178.38545 * 18 16 15 20 20 C 1.53095 * 109.27529 * 301.42580 * 19 18 16 21 21 N 1.47011 * 109.27259 * 56.81132 * 20 19 18 22 22 C 1.47035 * 110.72663 * 301.32934 * 21 20 19 23 23 H 1.09000 * 109.85284 * 178.85968 * 22 21 20 24 24 C 1.46824 * 111.00233 * 190.20803 * 13 12 10 25 25 H 0.96994 * 120.00226 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00234 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47230 * 59.99776 * 12 10 9 28 28 H 1.09003 * 109.47159 * 300.00233 * 12 10 9 29 29 H 1.09002 * 109.47499 * 305.97642 * 14 13 12 30 30 H 1.09005 * 109.47564 * 65.98715 * 14 13 12 31 31 H 1.09003 * 109.48637 * 60.78454 * 15 14 13 32 32 H 1.08997 * 109.49599 * 180.85475 * 15 14 13 33 33 H 1.09001 * 109.50436 * 61.36473 * 19 18 16 34 34 H 1.08994 * 109.50386 * 181.48473 * 19 18 16 35 35 H 1.08991 * 109.50699 * 176.75783 * 20 19 18 36 36 H 1.09005 * 109.50273 * 296.87599 * 20 19 18 37 37 H 1.00896 * 111.00315 * 177.56843 * 21 20 19 38 38 H 1.09003 * 109.44709 * 294.16790 * 24 13 12 39 39 H 1.09001 * 109.44840 * 54.07940 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2440 -4.8629 0.0022 13 7 2.1986 -5.9794 0.0027 14 6 2.9636 -6.0171 1.2558 15 6 4.0456 -7.0952 1.1602 16 6 3.3876 -8.4525 0.9014 17 1 4.1563 -9.2169 0.7877 18 8 2.5389 -8.7883 2.0017 19 6 1.8467 -10.0291 1.8373 20 6 0.9946 -9.9681 0.5669 21 7 1.8574 -9.6554 -0.5815 22 6 2.5503 -8.3745 -0.3783 23 1 3.2007 -8.1667 -1.2280 24 6 1.5152 -7.2561 -0.2397 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.6176 -4.9213 -0.8880 28 1 0.6169 -4.9201 0.8919 29 1 3.4311 -5.0471 1.4254 30 1 2.2934 -6.2474 2.0840 31 1 4.7240 -6.8578 0.3408 32 1 4.6039 -7.1341 2.0955 33 1 2.5695 -10.8405 1.7521 34 1 1.2029 -10.2036 2.6993 35 1 0.5104 -10.9313 0.4068 36 1 0.2363 -9.1923 0.6743 37 1 1.3278 -9.6477 -1.4403 38 1 0.8518 -7.4772 0.5966 39 1 0.9309 -7.1866 -1.1572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404072103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:49 Heat of formation + Delta-G solvation = -90.265083 kcal Electronic energy + Delta-G solvation = -21472.218224 eV Core-core repulsion = 18220.748534 eV Total energy + Delta-G solvation = -3251.469689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52358 -40.12314 -37.79745 -36.00258 -35.79869 -33.71966 -33.18220 -30.98759 -29.23269 -27.67896 -26.43600 -24.62136 -24.06392 -22.69649 -21.00674 -19.91713 -19.85514 -17.84995 -17.75436 -17.13272 -17.02405 -16.70516 -16.51987 -16.01298 -15.72925 -15.47356 -15.14533 -14.82262 -14.42470 -14.36594 -14.04902 -13.79705 -13.48905 -13.27520 -12.97130 -12.68769 -12.68337 -12.40665 -12.28327 -12.11874 -11.94355 -11.67522 -11.47517 -11.30352 -10.58219 -10.31906 -10.00289 -9.56987 -9.16138 -8.46706 -5.95353 1.36532 1.41756 1.56138 2.04162 2.27797 2.63467 2.83098 3.15308 3.19835 3.37913 3.64582 3.88840 3.97157 4.05004 4.11742 4.23536 4.30039 4.33670 4.37136 4.47034 4.47998 4.55418 4.56818 4.75175 4.82099 4.87331 4.95799 5.01382 5.17241 5.23167 5.41287 5.75494 5.89004 6.05322 6.16450 6.25883 6.35238 6.60280 7.12847 7.55714 8.11372 8.71138 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044818 B = 0.003921 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.600797 B = 7139.893944 C = 7379.870514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.610 6.610 12 C 0.058 3.942 13 N -0.523 5.523 14 C 0.061 3.939 15 C -0.100 4.100 16 C 0.102 3.898 17 H 0.075 0.925 18 O -0.400 6.400 19 C 0.056 3.944 20 C 0.015 3.985 21 N -0.675 5.675 22 C 0.065 3.935 23 H 0.099 0.901 24 C 0.034 3.966 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.356 0.644 38 H 0.035 0.965 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -19.738 0.934 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.496 6.496 12 C -0.073 4.073 13 N -0.248 5.248 14 C -0.067 4.067 15 C -0.139 4.139 16 C 0.044 3.956 17 H 0.092 0.908 18 O -0.319 6.319 19 C -0.020 4.020 20 C -0.114 4.114 21 N -0.307 5.307 22 C -0.045 4.045 23 H 0.117 0.883 24 C -0.095 4.095 25 H 0.087 0.913 26 H 0.229 0.771 27 H 0.127 0.873 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.055 0.945 37 H 0.176 0.824 38 H 0.053 0.947 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.690 -19.803 0.937 19.837 hybrid contribution -1.580 1.468 0.301 2.178 sum -0.890 -18.335 1.238 18.398 Atomic orbital electron populations 1.69680 1.06884 1.29213 1.50571 1.26042 0.96525 1.02413 0.96307 0.84865 0.78061 0.77069 0.78306 1.19730 1.19570 1.19653 1.19708 0.92715 0.83919 1.49713 0.90215 1.41939 1.09267 1.04721 1.65313 1.20661 0.88310 0.85767 0.82231 1.90458 1.15502 1.87687 1.55969 1.21705 0.93696 0.88968 1.02927 1.61521 1.25273 1.02032 1.36009 1.22017 0.95761 0.99911 0.88975 1.21529 0.97224 0.91805 1.03296 1.22107 0.91751 0.96512 0.85266 0.90753 1.87980 1.61260 1.40546 1.42156 1.22836 0.95378 0.85865 0.97946 1.22703 0.94799 1.02365 0.91563 1.60864 1.33887 1.29998 1.05923 1.22104 0.95868 0.87170 0.99406 0.88317 1.22797 0.96684 0.89199 1.00856 0.91331 0.77136 0.87325 0.92354 0.91771 0.95694 0.89743 0.89977 0.91907 0.87243 0.87363 0.94519 0.82432 0.94661 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.34 13.05 21.66 0.28 -50.05 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 3 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -30.12 5.29 -306.99 -1.62 -31.74 16 10 C 0.44 21.64 7.46 87.66 0.65 22.29 16 11 O -0.61 -34.05 13.92 -3.06 -0.04 -34.10 16 12 C 0.06 2.15 5.45 85.56 0.47 2.61 16 13 N -0.52 -17.84 4.39 -900.95 -3.96 -21.80 16 14 C 0.06 2.15 4.97 86.32 0.43 2.58 16 15 C -0.10 -2.85 5.82 30.62 0.18 -2.67 16 16 C 0.10 2.47 3.02 30.65 0.09 2.56 16 17 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 18 O -0.40 -10.01 9.35 -148.98 -1.39 -11.41 16 19 C 0.06 0.99 7.01 72.01 0.50 1.50 16 20 C 0.02 0.23 6.36 86.31 0.55 0.78 16 21 N -0.68 -11.78 6.71 -490.57 -3.29 -15.08 16 22 C 0.07 1.48 3.18 44.94 0.14 1.63 16 23 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 24 C 0.03 0.88 4.42 86.33 0.38 1.27 16 25 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 27 H 0.11 3.49 7.98 -2.39 -0.02 3.47 16 28 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 29 H 0.06 2.77 5.80 -2.39 -0.01 2.75 16 30 H 0.02 0.88 7.76 -2.38 -0.02 0.86 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 0.64 6.32 -2.38 -0.02 0.63 16 37 H 0.36 5.04 8.88 -89.70 -0.80 4.24 16 38 H 0.04 0.95 5.97 -2.39 -0.01 0.93 16 39 H 0.08 1.90 8.01 -2.39 -0.02 1.88 16 Total: -1.00 -67.32 305.66 -3.78 -71.10 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -0.45 Total: 33.65 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 4.68 Total: 14.06 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -8.59 Total: -118.67 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -1.44 Total: -45.50 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.32 -3.78 -71.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.165 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds