Wall clock time and date at job start Mon Mar 30 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48501 * 109.46785 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47183 * 300.00116 * 3 2 1 6 6 H 1.48495 * 109.46880 * 60.00127 * 3 2 1 7 7 C 1.38955 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00241 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99955 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00502 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47296 * 186.27475 * 12 10 9 14 14 C 1.46869 * 111.00018 * 190.54930 * 13 12 10 15 15 C 1.53032 * 109.46024 * 174.02120 * 14 13 12 16 16 C 1.53030 * 109.35727 * 59.16832 * 15 14 13 17 17 H 1.08998 * 109.51494 * 182.63220 * 16 15 14 18 18 O 1.42959 * 109.49206 * 62.36527 * 16 15 14 19 19 C 1.43029 * 113.74696 * 181.60644 * 18 16 15 20 20 C 1.53095 * 109.27280 * 58.57871 * 19 18 16 21 21 N 1.47016 * 109.26840 * 303.18445 * 20 19 18 22 22 C 1.47033 * 110.73055 * 58.67767 * 21 20 19 23 23 H 1.08997 * 109.84621 * 181.14801 * 22 21 20 24 24 C 1.46829 * 111.00332 * 66.39308 * 13 12 10 25 25 H 0.96999 * 119.99808 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00280 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46999 * 66.26995 * 12 10 9 28 28 H 1.09000 * 109.46819 * 306.27656 * 12 10 9 29 29 H 1.09000 * 109.47001 * 294.01857 * 14 13 12 30 30 H 1.09004 * 109.46663 * 54.02077 * 14 13 12 31 31 H 1.08994 * 109.48891 * 179.13264 * 15 14 13 32 32 H 1.09003 * 109.48754 * 299.20744 * 15 14 13 33 33 H 1.09000 * 109.50178 * 178.51713 * 19 18 16 34 34 H 1.09000 * 109.50199 * 298.59932 * 19 18 16 35 35 H 1.09005 * 109.50296 * 63.11777 * 20 19 18 36 36 H 1.08997 * 109.50635 * 183.23986 * 20 19 18 37 37 H 1.00902 * 110.99587 * 294.91068 * 21 20 19 38 38 H 1.08996 * 109.45321 * 65.83946 * 24 13 12 39 39 H 1.09008 * 109.44345 * 305.92427 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0010 12 6 1.2437 -4.8630 0.0011 13 7 2.1911 -5.9754 0.1524 14 6 1.5320 -7.2650 -0.0915 15 6 2.5767 -8.3831 -0.0723 16 6 3.2796 -8.3973 1.2869 17 1 4.0562 -9.1621 1.2873 18 8 2.3262 -8.6796 2.3141 19 6 2.8821 -8.6788 3.6319 20 6 3.5105 -7.3117 3.9144 21 7 4.5182 -7.0188 2.8848 22 6 3.9113 -7.0265 1.5456 23 1 4.6740 -6.8281 0.7925 24 6 2.8285 -5.9477 1.4748 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 0.7035 -4.9711 -0.9394 28 1 0.5358 -4.8734 0.8299 29 1 0.7906 -7.4469 0.6865 30 1 1.0404 -7.2435 -1.0641 31 1 2.0859 -9.3421 -0.2379 32 1 3.3104 -8.2088 -0.8593 33 1 2.0942 -8.8745 4.3593 34 1 3.6457 -9.4532 3.7052 35 1 2.7366 -6.5443 3.8948 36 1 3.9857 -7.3252 4.8953 37 1 5.2879 -7.6692 2.9368 38 1 2.0785 -6.1352 2.2432 39 1 3.2797 -4.9692 1.6398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404072106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:52 Heat of formation + Delta-G solvation = -63.526961 kcal Electronic energy + Delta-G solvation = -21624.076808 eV Core-core repulsion = 18373.766570 eV Total energy + Delta-G solvation = -3250.310237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52911 -38.32479 -36.52191 -34.79847 -33.86061 -32.46757 -31.14308 -29.97528 -27.79362 -26.47651 -24.56744 -23.61374 -22.78342 -21.60392 -19.18143 -18.97447 -17.80919 -16.67856 -16.19168 -16.00176 -15.88709 -15.46324 -15.02160 -14.51803 -14.40288 -14.03274 -13.64902 -13.44529 -13.14434 -12.83258 -12.56709 -12.29045 -11.95127 -11.68096 -11.50706 -11.44664 -11.20579 -10.98293 -10.96091 -10.68816 -10.40112 -10.29952 -10.17463 -10.08404 -9.42648 -8.41305 -8.19554 -7.90638 -7.76110 -6.36507 -3.76818 3.20110 3.30262 3.37841 3.59249 3.87267 3.97859 4.19091 4.39536 4.59044 4.77387 4.84077 4.95641 5.03401 5.12373 5.20936 5.28505 5.30633 5.47231 5.53302 5.56096 5.63511 5.76620 5.87408 5.90513 5.97313 6.00124 6.11458 6.28297 6.36626 6.49511 6.84598 7.04571 7.24596 7.37745 7.49351 7.60678 8.12705 8.68243 9.24192 9.60977 10.13282 10.81560 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.004418 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.146904 B = 6336.056170 C = 6704.758835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.444 3.556 11 O -0.574 6.574 12 C 0.049 3.951 13 N -0.515 5.515 14 C 0.056 3.944 15 C -0.102 4.102 16 C 0.055 3.945 17 H 0.054 0.946 18 O -0.375 6.375 19 C 0.024 3.976 20 C 0.016 3.984 21 N -0.675 5.675 22 C 0.066 3.934 23 H 0.102 0.898 24 C 0.071 3.929 25 H 0.270 0.730 26 H 0.391 0.609 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.340 0.660 38 H 0.028 0.972 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -17.384 4.634 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.457 6.457 12 C -0.083 4.083 13 N -0.240 5.240 14 C -0.072 4.072 15 C -0.140 4.140 16 C -0.005 4.005 17 H 0.072 0.928 18 O -0.294 6.294 19 C -0.055 4.055 20 C -0.114 4.114 21 N -0.304 5.304 22 C -0.045 4.045 23 H 0.120 0.880 24 C -0.057 4.057 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.157 0.843 38 H 0.046 0.954 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.323 -16.489 4.325 17.368 hybrid contribution -0.809 -0.225 0.587 1.024 sum 2.514 -16.714 4.912 17.602 Atomic orbital electron populations 1.69623 1.05933 1.27936 1.51029 1.25246 0.95610 0.99656 0.97502 0.85814 0.79741 0.81243 0.77639 1.19219 1.20805 1.20837 1.19748 0.93375 0.82219 1.47199 0.87879 1.41883 1.09160 1.04604 1.64755 1.19767 0.88458 0.84523 0.84303 1.90513 1.13598 1.86928 1.54685 1.21820 0.93640 0.91167 1.01631 1.61440 1.31066 1.01110 1.30364 1.22039 0.95341 0.88945 1.00903 1.21521 0.99231 0.98660 0.94597 1.22859 0.91840 0.96783 0.88999 0.92811 1.88033 1.35375 1.91611 1.14398 1.23254 0.99343 0.97471 0.85430 1.22731 0.96254 0.96443 0.95975 1.60685 1.10242 1.56135 1.03311 1.22140 0.97847 0.93626 0.90845 0.87957 1.22033 0.94922 1.00509 0.88230 0.92015 0.77560 0.89231 0.93668 0.94417 0.90732 0.90959 0.89486 0.88655 0.93555 0.89448 0.89792 0.84272 0.95390 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 9 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 10 C 0.44 10.71 7.31 -10.99 -0.08 10.63 16 11 O -0.57 -15.72 14.28 5.54 0.08 -15.64 16 12 C 0.05 0.91 5.45 -4.98 -0.03 0.88 16 13 N -0.51 -8.95 4.35 -236.13 -1.03 -9.97 16 14 C 0.06 0.78 5.33 -3.82 -0.02 0.76 16 15 C -0.10 -1.21 5.82 -26.70 -0.16 -1.37 16 16 C 0.05 0.67 3.01 -26.65 -0.08 0.59 16 17 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 18 O -0.38 -4.87 9.35 -35.23 -0.33 -5.19 16 19 C 0.02 0.24 7.01 37.21 0.26 0.50 16 20 C 0.02 0.18 6.36 -3.71 -0.02 0.15 16 21 N -0.67 -8.54 6.71 -106.41 -0.71 -9.25 16 22 C 0.07 0.94 3.18 -67.56 -0.21 0.72 16 23 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 24 C 0.07 1.24 4.09 -3.86 -0.02 1.22 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 27 H 0.09 1.50 7.98 -51.93 -0.41 1.09 16 28 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 29 H 0.04 0.54 7.76 -51.93 -0.40 0.14 16 30 H 0.07 0.94 8.01 -51.93 -0.42 0.52 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 1.15 6.32 -51.93 -0.33 0.82 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.34 3.48 8.89 -39.29 -0.35 3.13 16 38 H 0.03 0.49 5.97 -51.93 -0.31 0.18 16 39 H 0.10 2.24 6.05 -51.92 -0.31 1.92 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -31.72 306.09 -8.08 -39.80 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.75 Total: 12.16 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.60 Total: 6.07 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -1.07 Total: -58.12 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.25 Total: -20.84 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.72 -8.08 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.727 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds