Wall clock time and date at job start Mon Mar 30 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48501 * 109.46785 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47183 * 300.00116 * 3 2 1 6 6 H 1.48495 * 109.46880 * 60.00127 * 3 2 1 7 7 C 1.38955 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00241 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99955 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00502 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47296 * 186.27475 * 12 10 9 14 14 C 1.46869 * 111.00018 * 190.54930 * 13 12 10 15 15 C 1.53032 * 109.46024 * 174.02120 * 14 13 12 16 16 C 1.53030 * 109.35727 * 59.16832 * 15 14 13 17 17 H 1.08998 * 109.51494 * 182.63220 * 16 15 14 18 18 O 1.42959 * 109.49206 * 62.36527 * 16 15 14 19 19 C 1.43029 * 113.74696 * 181.60644 * 18 16 15 20 20 C 1.53095 * 109.27280 * 58.57871 * 19 18 16 21 21 N 1.47016 * 109.26840 * 303.18445 * 20 19 18 22 22 C 1.47033 * 110.73055 * 58.67767 * 21 20 19 23 23 H 1.08997 * 109.84621 * 181.14801 * 22 21 20 24 24 C 1.46829 * 111.00332 * 66.39308 * 13 12 10 25 25 H 0.96999 * 119.99808 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00280 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46999 * 66.26995 * 12 10 9 28 28 H 1.09000 * 109.46819 * 306.27656 * 12 10 9 29 29 H 1.09000 * 109.47001 * 294.01857 * 14 13 12 30 30 H 1.09004 * 109.46663 * 54.02077 * 14 13 12 31 31 H 1.08994 * 109.48891 * 179.13264 * 15 14 13 32 32 H 1.09003 * 109.48754 * 299.20744 * 15 14 13 33 33 H 1.09000 * 109.50178 * 178.51713 * 19 18 16 34 34 H 1.09000 * 109.50199 * 298.59932 * 19 18 16 35 35 H 1.09005 * 109.50296 * 63.11777 * 20 19 18 36 36 H 1.08997 * 109.50635 * 183.23986 * 20 19 18 37 37 H 1.00902 * 110.99587 * 294.91068 * 21 20 19 38 38 H 1.08996 * 109.45321 * 65.83946 * 24 13 12 39 39 H 1.09008 * 109.44345 * 305.92427 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0010 12 6 1.2437 -4.8630 0.0011 13 7 2.1911 -5.9754 0.1524 14 6 1.5320 -7.2650 -0.0915 15 6 2.5767 -8.3831 -0.0723 16 6 3.2796 -8.3973 1.2869 17 1 4.0562 -9.1621 1.2873 18 8 2.3262 -8.6796 2.3141 19 6 2.8821 -8.6788 3.6319 20 6 3.5105 -7.3117 3.9144 21 7 4.5182 -7.0188 2.8848 22 6 3.9113 -7.0265 1.5456 23 1 4.6740 -6.8281 0.7925 24 6 2.8285 -5.9477 1.4748 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 0.7035 -4.9711 -0.9394 28 1 0.5358 -4.8734 0.8299 29 1 0.7906 -7.4469 0.6865 30 1 1.0404 -7.2435 -1.0641 31 1 2.0859 -9.3421 -0.2379 32 1 3.3104 -8.2088 -0.8593 33 1 2.0942 -8.8745 4.3593 34 1 3.6457 -9.4532 3.7052 35 1 2.7366 -6.5443 3.8948 36 1 3.9857 -7.3252 4.8953 37 1 5.2879 -7.6692 2.9368 38 1 2.0785 -6.1352 2.2432 39 1 3.2797 -4.9692 1.6398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404072106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:52 Heat of formation + Delta-G solvation = -90.324600 kcal Electronic energy + Delta-G solvation = -21625.238841 eV Core-core repulsion = 18373.766570 eV Total energy + Delta-G solvation = -3251.472270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60493 -40.10531 -37.87366 -35.90726 -35.77819 -33.68408 -33.18705 -31.02786 -29.25798 -27.69894 -26.37196 -24.59426 -24.11050 -22.65879 -21.04001 -20.10917 -19.86132 -17.83859 -17.62706 -17.20433 -16.98146 -16.68328 -16.47982 -16.08541 -15.86472 -15.61600 -15.16978 -14.78961 -14.64958 -13.99074 -13.64494 -13.58390 -13.49977 -13.26015 -12.97836 -12.81353 -12.53070 -12.40048 -12.29583 -12.11288 -12.05812 -11.70748 -11.63546 -11.41420 -11.03700 -10.27721 -9.99045 -9.28047 -9.10896 -8.45724 -5.94215 1.36853 1.41625 1.56259 2.06410 2.28810 2.61048 2.79895 3.14493 3.21384 3.48323 3.59776 3.83180 3.91261 4.06814 4.11265 4.18098 4.25983 4.29166 4.36182 4.44398 4.51780 4.59941 4.64165 4.73152 4.87944 4.93167 4.95811 5.00870 5.03238 5.24535 5.41923 5.79666 5.91672 6.08950 6.15848 6.22845 6.40174 6.61991 7.14300 7.57400 8.13746 8.72208 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.004418 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.146904 B = 6336.056170 C = 6704.758835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.611 6.611 12 C 0.059 3.941 13 N -0.529 5.529 14 C 0.056 3.944 15 C -0.100 4.100 16 C 0.061 3.939 17 H 0.077 0.923 18 O -0.392 6.392 19 C 0.024 3.976 20 C 0.017 3.983 21 N -0.690 5.690 22 C 0.070 3.930 23 H 0.087 0.913 24 C 0.081 3.919 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.355 0.645 38 H 0.024 0.976 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -18.936 4.776 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.497 6.497 12 C -0.072 4.072 13 N -0.254 5.254 14 C -0.071 4.071 15 C -0.138 4.138 16 C 0.002 3.998 17 H 0.095 0.905 18 O -0.311 6.311 19 C -0.054 4.054 20 C -0.112 4.112 21 N -0.321 5.321 22 C -0.040 4.040 23 H 0.105 0.895 24 C -0.048 4.048 25 H 0.087 0.913 26 H 0.229 0.771 27 H 0.133 0.867 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.175 0.825 38 H 0.042 0.958 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.037 -18.070 4.472 18.861 hybrid contribution -0.717 0.237 0.585 0.956 sum 2.320 -17.833 5.057 18.681 Atomic orbital electron populations 1.69683 1.06849 1.29179 1.50635 1.26032 0.96531 1.02361 0.96345 0.84872 0.78005 0.77111 0.78349 1.19857 1.19465 1.19627 1.19686 0.92630 0.83991 1.49700 0.90427 1.41946 1.09250 1.04719 1.65459 1.20742 0.88331 0.85856 0.82178 1.90485 1.15598 1.87769 1.55818 1.21711 0.93325 0.88755 1.03397 1.61449 1.31403 1.02299 1.30253 1.22156 0.95875 0.87501 1.01569 1.21568 0.98887 0.98807 0.94554 1.22812 0.92258 0.95605 0.89170 0.90487 1.88009 1.36152 1.91511 1.15438 1.23382 1.00372 0.97053 0.84572 1.22735 0.95490 0.96433 0.96570 1.60592 1.11222 1.57378 1.02892 1.21967 0.96517 0.94065 0.91491 0.89471 1.21805 0.95558 0.99074 0.88336 0.91338 0.77128 0.86721 0.92441 0.94694 0.89084 0.88543 0.89127 0.87171 0.91369 0.92223 0.87530 0.82525 0.95783 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.58 -30.68 5.29 -306.98 -1.62 -32.30 16 10 C 0.44 22.02 7.31 87.66 0.64 22.66 16 11 O -0.61 -35.10 14.28 -3.08 -0.04 -35.14 16 12 C 0.06 2.21 5.45 85.56 0.47 2.68 16 13 N -0.53 -18.28 4.35 -900.98 -3.92 -22.20 16 14 C 0.06 1.45 5.33 86.32 0.46 1.91 16 15 C -0.10 -2.12 5.82 30.61 0.18 -1.95 16 16 C 0.06 1.36 3.01 30.65 0.09 1.45 16 17 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 18 O -0.39 -9.20 9.35 -148.98 -1.39 -10.59 16 19 C 0.02 0.43 7.01 72.01 0.50 0.94 16 20 C 0.02 0.36 6.36 86.31 0.55 0.91 16 21 N -0.69 -17.06 6.71 -490.57 -3.29 -20.35 16 22 C 0.07 1.99 3.18 44.94 0.14 2.13 16 23 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 24 C 0.08 2.89 4.09 86.32 0.35 3.24 16 25 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.40 20.02 7.90 -92.71 -0.73 19.28 16 27 H 0.11 3.69 7.98 -2.39 -0.02 3.68 16 28 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 29 H 0.03 0.94 7.76 -2.39 -0.02 0.92 16 30 H 0.09 2.05 8.01 -2.38 -0.02 2.03 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.59 6.32 -2.38 -0.02 1.58 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.36 6.75 8.89 -89.69 -0.80 5.95 16 38 H 0.02 0.87 5.97 -2.39 -0.01 0.85 16 39 H 0.05 2.42 6.05 -2.38 -0.01 2.41 16 Total: -1.00 -70.38 306.09 -3.75 -74.13 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.46 Total: 35.83 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 4.67 Total: 15.24 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -8.55 Total: -125.39 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.44 Total: -45.74 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.38 -3.75 -74.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.194 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds