Wall clock time and date at job start Mon Mar 30 2020 05:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 114.00252 * 2 1 4 4 C 1.50703 * 110.46044 * 64.29352 * 3 2 1 5 5 O 1.21275 * 120.00161 * 217.74497 * 4 3 2 6 6 N 1.34774 * 119.99514 * 37.74684 * 4 3 2 7 7 C 1.46498 * 119.99686 * 184.99627 * 6 4 3 8 8 C 1.53008 * 109.47197 * 184.77017 * 7 6 4 9 9 C 1.50694 * 115.54860 * 294.80954 * 8 7 6 10 10 H 1.08001 * 120.00297 * 99.46483 * 9 8 7 11 11 C 1.37884 * 120.00147 * 279.46878 * 9 8 7 12 12 N 1.31515 * 119.99374 * 5.41012 * 11 9 8 13 13 Si 1.86798 * 120.00267 * 185.41247 * 11 9 8 14 14 H 1.48494 * 109.47008 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.46850 * 299.99526 * 13 11 9 16 16 H 1.48497 * 109.47171 * 59.99785 * 13 11 9 17 17 C 1.53000 * 117.51638 * 80.50523 * 8 7 6 18 18 C 1.52991 * 117.49911 * 149.13593 * 8 7 6 19 19 C 1.54513 * 110.51400 * 186.90528 * 3 2 1 20 20 C 1.54476 * 104.06311 * 118.78071 * 19 3 2 21 21 O 1.44426 * 104.80704 * 23.97761 * 20 19 3 22 22 C 1.44420 * 105.27149 * 319.48783 * 21 20 19 23 23 H 1.08997 * 109.47278 * 185.04620 * 1 2 3 24 24 H 1.09009 * 109.47208 * 305.04693 * 1 2 3 25 25 H 1.09008 * 109.47295 * 65.04650 * 1 2 3 26 26 H 0.96994 * 120.00358 * 4.98852 * 6 4 3 27 27 H 1.08997 * 109.47431 * 64.77366 * 7 6 4 28 28 H 1.09004 * 109.47359 * 304.76968 * 7 6 4 29 29 H 0.96994 * 120.00602 * 354.99239 * 12 11 9 30 30 H 1.08999 * 117.49850 * 214.97306 * 17 8 7 31 31 H 1.09005 * 117.49646 * 359.97438 * 17 8 7 32 32 H 1.09004 * 117.50236 * 359.97438 * 18 8 7 33 33 H 1.09005 * 117.49799 * 144.97497 * 18 8 7 34 34 H 1.09000 * 110.50788 * 237.41908 * 19 3 2 35 35 H 1.08996 * 110.50624 * 0.13013 * 19 3 2 36 36 H 1.08994 * 110.37371 * 142.81301 * 20 19 3 37 37 H 1.09005 * 110.37199 * 265.03591 * 20 19 3 38 38 H 1.08999 * 110.37872 * 281.68183 * 22 21 20 39 39 H 1.09009 * 110.36968 * 159.34209 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6650 2.0358 1.2722 5 8 1.4284 3.2249 1.2437 6 7 1.6192 1.3674 2.4416 7 6 1.1778 2.0516 3.6595 8 6 1.3310 1.1113 4.8568 9 6 0.4515 -0.1122 4.8390 10 1 0.8535 -1.0616 4.5170 11 6 -0.8663 -0.0199 5.2337 12 7 -1.3851 1.1534 5.5237 13 14 -1.9148 -1.5609 5.3566 14 1 -3.2839 -1.1941 5.7994 15 1 -1.9838 -2.2199 4.0276 16 1 -1.3101 -2.4939 6.3410 17 6 2.7252 0.9703 5.4710 18 6 1.6353 1.7429 6.2166 19 6 3.5429 1.2157 -0.1740 20 6 3.8165 1.9775 -1.4897 21 8 2.6953 2.8760 -1.6360 22 6 1.5393 2.1108 -1.2313 23 1 -0.3633 -1.0236 0.0904 24 1 -0.3634 0.5902 0.8414 25 1 -0.3634 0.4336 -0.9318 26 1 1.8784 0.4334 2.4769 27 1 0.1317 2.3398 3.5555 28 1 1.7862 2.9423 3.8168 29 1 -0.8231 1.9439 5.5306 30 1 3.0063 -0.0074 5.8622 31 1 3.5337 1.5472 5.0218 32 1 1.7267 2.8283 6.2583 33 1 1.1989 1.2737 7.0985 34 1 4.0509 1.6996 0.6602 35 1 3.8569 0.1757 -0.2623 36 1 4.7469 2.5405 -1.4157 37 1 3.8600 1.2827 -2.3285 38 1 1.2316 1.4366 -2.0306 39 1 0.7201 2.7764 -0.9587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404174613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:08 Heat of formation + Delta-G solvation = -104.356858 kcal Electronic energy + Delta-G solvation = -21895.657849 eV Core-core repulsion = 18611.284343 eV Total energy + Delta-G solvation = -3284.373506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69227 -38.31958 -37.10390 -36.87596 -33.41159 -32.00017 -31.62508 -28.98379 -26.71190 -26.58196 -24.93883 -23.08584 -22.20170 -21.37221 -19.79513 -19.45940 -17.90659 -17.05992 -16.62152 -15.95988 -15.35112 -15.27972 -14.89631 -14.52022 -14.27373 -14.04655 -13.81505 -13.57197 -13.00433 -12.89148 -12.60986 -12.37392 -11.94110 -11.73779 -11.66161 -11.28787 -11.15327 -10.99529 -10.86314 -10.55089 -10.35473 -10.19110 -9.83833 -9.75771 -9.18579 -8.73946 -8.57738 -8.43922 -8.28018 -6.44575 -4.21281 2.86429 3.32339 3.35189 3.37475 3.55978 3.62028 4.02495 4.41835 4.47679 4.59449 4.83379 4.98165 5.08646 5.13379 5.23940 5.35916 5.41237 5.53759 5.54989 5.61000 5.71198 5.76838 5.81549 5.87422 6.07789 6.18706 6.32157 6.47508 6.57364 6.59290 6.79168 6.93503 7.07235 7.12330 7.20038 8.10654 8.12000 8.28903 8.65527 8.75722 9.54742 10.94130 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.006081 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.610194 B = 4603.657277 C = 5213.515162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.362 6.362 3 C 0.067 3.933 4 C 0.491 3.509 5 O -0.543 6.543 6 N -0.689 5.689 7 C 0.156 3.844 8 C 0.005 3.995 9 C -0.575 4.575 10 H 0.054 0.946 11 C 0.029 3.971 12 N -0.900 5.900 13 Si 1.065 2.935 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.288 1.288 17 C -0.192 4.192 18 C -0.174 4.174 19 C -0.138 4.138 20 C 0.046 3.954 21 O -0.360 6.360 22 C 0.041 3.959 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.407 0.593 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.275 0.725 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.220 -2.497 -11.185 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.280 6.280 3 C 0.023 3.977 4 C 0.274 3.726 5 O -0.421 6.421 6 N -0.338 5.338 7 C 0.033 3.967 8 C 0.005 3.995 9 C -0.612 4.612 10 H 0.072 0.928 11 C -0.177 4.177 12 N -0.534 5.534 13 Si 0.894 3.106 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.214 1.214 17 C -0.230 4.230 18 C -0.212 4.212 19 C -0.176 4.176 20 C -0.031 4.031 21 O -0.278 6.278 22 C -0.037 4.037 23 H 0.114 0.886 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.242 0.758 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.584 -2.124 -10.927 12.454 hybrid contribution 1.473 0.036 -0.030 1.474 sum 7.057 -2.088 -10.958 13.200 Atomic orbital electron populations 1.22935 0.79937 1.03930 1.00758 1.87973 1.20789 1.24466 1.94810 1.23190 0.95728 0.84557 0.94180 1.20695 0.78551 0.87802 0.85555 1.90696 1.49941 1.14850 1.86616 1.45894 1.64842 1.15474 1.07555 1.21086 0.98827 0.93407 0.83406 1.19321 0.94119 0.96853 0.89252 1.21202 0.97154 0.93081 1.49794 0.92819 1.25769 0.96082 1.02599 0.93265 1.70737 1.38812 0.99284 1.44557 0.83591 0.76210 0.74257 0.76592 1.20776 1.21430 1.21398 1.22850 0.92474 1.00766 1.06867 1.22777 1.03628 0.96852 0.97934 1.22921 0.91583 1.03376 0.99699 1.23441 0.91307 0.92722 0.95649 1.89190 1.15808 1.35298 1.87490 1.23844 0.90838 0.95226 0.93789 0.88623 0.92604 0.93818 0.75756 0.91657 0.93987 0.91334 0.89997 0.91394 0.91305 0.89567 0.89307 0.88122 0.88576 0.91709 0.90869 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.43 101.05 1.05 1.34 16 2 O -0.36 -5.32 9.84 -35.23 -0.35 -5.66 16 3 C 0.07 1.01 1.02 -90.20 -0.09 0.92 16 4 C 0.49 9.32 5.36 -10.99 -0.06 9.26 16 5 O -0.54 -12.09 15.79 5.56 0.09 -12.00 16 6 N -0.69 -13.57 5.23 -60.29 -0.32 -13.89 16 7 C 0.16 3.50 5.39 -4.04 -0.02 3.47 16 8 C 0.01 0.12 0.90 -155.66 -0.14 -0.02 16 9 C -0.57 -14.70 8.57 -34.44 -0.30 -14.99 16 10 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 11 C 0.03 0.78 5.42 -17.82 -0.10 0.68 16 12 N -0.90 -25.52 13.61 55.43 0.75 -24.77 16 13 Si 1.07 23.73 29.91 -169.99 -5.08 18.64 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 17 C -0.19 -3.94 9.96 -26.73 -0.27 -4.21 16 18 C -0.17 -3.83 8.97 -26.74 -0.24 -4.07 16 19 C -0.14 -1.71 6.53 -25.16 -0.16 -1.88 16 20 C 0.05 0.52 7.63 37.93 0.29 0.80 16 21 O -0.36 -5.40 11.65 -35.23 -0.41 -5.81 16 22 C 0.04 0.59 5.46 37.94 0.21 0.79 16 23 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 0.92 7.07 -51.92 -0.37 0.56 16 25 H 0.04 0.51 7.08 -51.92 -0.37 0.14 16 26 H 0.41 7.76 7.98 -40.82 -0.33 7.43 16 27 H 0.07 1.65 7.63 -51.93 -0.40 1.25 16 28 H 0.04 0.93 8.06 -51.93 -0.42 0.52 16 29 H 0.28 7.80 6.08 -40.82 -0.25 7.55 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.09 1.14 7.73 -51.93 -0.40 0.74 16 35 H 0.10 1.07 8.00 -51.93 -0.42 0.65 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.88 7.63 -51.93 -0.40 0.48 16 39 H 0.11 1.65 7.29 -51.92 -0.38 1.28 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -30.19 322.34 -6.16 -36.35 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.88 Total: 10.17 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 0.17 Total: -7.89 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.44 Total: -38.66 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.67 Total: -23.48 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.08 Total: 18.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.19 -6.16 -36.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404174613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.007 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds