Wall clock time and date at job start Mon Mar 30 2020 05:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 114.00252 * 2 1 4 4 C 1.50703 * 110.46044 * 64.29352 * 3 2 1 5 5 O 1.21275 * 120.00161 * 217.74497 * 4 3 2 6 6 N 1.34774 * 119.99514 * 37.74684 * 4 3 2 7 7 C 1.46498 * 119.99686 * 184.99627 * 6 4 3 8 8 C 1.53008 * 109.47197 * 184.77017 * 7 6 4 9 9 C 1.50694 * 115.54860 * 294.80954 * 8 7 6 10 10 H 1.08001 * 120.00297 * 99.46483 * 9 8 7 11 11 C 1.37884 * 120.00147 * 279.46878 * 9 8 7 12 12 N 1.31515 * 119.99374 * 5.41012 * 11 9 8 13 13 Si 1.86798 * 120.00267 * 185.41247 * 11 9 8 14 14 H 1.48494 * 109.47008 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.46850 * 299.99526 * 13 11 9 16 16 H 1.48497 * 109.47171 * 59.99785 * 13 11 9 17 17 C 1.53000 * 117.51638 * 80.50523 * 8 7 6 18 18 C 1.52991 * 117.49911 * 149.13593 * 8 7 6 19 19 C 1.54513 * 110.51400 * 186.90528 * 3 2 1 20 20 C 1.54476 * 104.06311 * 118.78071 * 19 3 2 21 21 O 1.44426 * 104.80704 * 23.97761 * 20 19 3 22 22 C 1.44420 * 105.27149 * 319.48783 * 21 20 19 23 23 H 1.08997 * 109.47278 * 185.04620 * 1 2 3 24 24 H 1.09009 * 109.47208 * 305.04693 * 1 2 3 25 25 H 1.09008 * 109.47295 * 65.04650 * 1 2 3 26 26 H 0.96994 * 120.00358 * 4.98852 * 6 4 3 27 27 H 1.08997 * 109.47431 * 64.77366 * 7 6 4 28 28 H 1.09004 * 109.47359 * 304.76968 * 7 6 4 29 29 H 0.96994 * 120.00602 * 354.99239 * 12 11 9 30 30 H 1.08999 * 117.49850 * 214.97306 * 17 8 7 31 31 H 1.09005 * 117.49646 * 359.97438 * 17 8 7 32 32 H 1.09004 * 117.50236 * 359.97438 * 18 8 7 33 33 H 1.09005 * 117.49799 * 144.97497 * 18 8 7 34 34 H 1.09000 * 110.50788 * 237.41908 * 19 3 2 35 35 H 1.08996 * 110.50624 * 0.13013 * 19 3 2 36 36 H 1.08994 * 110.37371 * 142.81301 * 20 19 3 37 37 H 1.09005 * 110.37199 * 265.03591 * 20 19 3 38 38 H 1.08999 * 110.37872 * 281.68183 * 22 21 20 39 39 H 1.09009 * 110.36968 * 159.34209 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6650 2.0358 1.2722 5 8 1.4284 3.2249 1.2437 6 7 1.6192 1.3674 2.4416 7 6 1.1778 2.0516 3.6595 8 6 1.3310 1.1113 4.8568 9 6 0.4515 -0.1122 4.8390 10 1 0.8535 -1.0616 4.5170 11 6 -0.8663 -0.0199 5.2337 12 7 -1.3851 1.1534 5.5237 13 14 -1.9148 -1.5609 5.3566 14 1 -3.2839 -1.1941 5.7994 15 1 -1.9838 -2.2199 4.0276 16 1 -1.3101 -2.4939 6.3410 17 6 2.7252 0.9703 5.4710 18 6 1.6353 1.7429 6.2166 19 6 3.5429 1.2157 -0.1740 20 6 3.8165 1.9775 -1.4897 21 8 2.6953 2.8760 -1.6360 22 6 1.5393 2.1108 -1.2313 23 1 -0.3633 -1.0236 0.0904 24 1 -0.3634 0.5902 0.8414 25 1 -0.3634 0.4336 -0.9318 26 1 1.8784 0.4334 2.4769 27 1 0.1317 2.3398 3.5555 28 1 1.7862 2.9423 3.8168 29 1 -0.8231 1.9439 5.5306 30 1 3.0063 -0.0074 5.8622 31 1 3.5337 1.5472 5.0218 32 1 1.7267 2.8283 6.2583 33 1 1.1989 1.2737 7.0985 34 1 4.0509 1.6996 0.6602 35 1 3.8569 0.1757 -0.2623 36 1 4.7469 2.5405 -1.4157 37 1 3.8600 1.2827 -2.3285 38 1 1.2316 1.4366 -2.0306 39 1 0.7201 2.7764 -0.9587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404174613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:07 Heat of formation + Delta-G solvation = -126.015422 kcal Electronic energy + Delta-G solvation = -21896.597035 eV Core-core repulsion = 18611.284343 eV Total energy + Delta-G solvation = -3285.312691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97975 -39.77744 -38.65493 -38.21598 -35.08762 -33.99106 -32.71785 -30.06103 -28.29698 -27.79207 -26.94317 -24.32455 -23.35590 -23.05245 -21.60413 -20.94447 -19.34273 -18.55000 -18.06780 -17.17095 -16.84079 -16.61796 -16.05734 -15.95393 -15.68773 -15.61814 -15.39789 -14.97133 -14.65245 -14.36405 -14.23326 -13.78955 -13.54781 -12.94685 -12.87866 -12.73205 -12.62485 -12.40845 -12.27129 -12.19959 -11.96598 -11.60938 -11.48864 -10.89716 -10.67935 -10.57133 -10.51275 -10.24277 -10.03959 -8.53864 -6.30427 1.35968 1.55527 1.61594 1.80198 1.98763 2.35787 2.58137 2.99780 3.17392 3.25307 3.35837 3.48258 3.66258 3.99328 4.05286 4.16152 4.28909 4.30342 4.32469 4.40116 4.42199 4.48507 4.54762 4.71762 4.75086 4.76710 4.78659 4.79712 4.87322 5.01452 5.27772 5.37565 5.43722 5.57642 5.83805 6.12033 6.23421 6.54420 6.67393 7.10263 7.52833 8.85144 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.006081 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.610194 B = 4603.657277 C = 5213.515162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.358 6.358 3 C 0.070 3.930 4 C 0.489 3.511 5 O -0.581 6.581 6 N -0.685 5.685 7 C 0.172 3.828 8 C -0.019 4.019 9 C -0.574 4.574 10 H 0.053 0.947 11 C -0.018 4.018 12 N -0.931 5.931 13 Si 1.106 2.894 14 H -0.292 1.292 15 H -0.269 1.269 16 H -0.273 1.273 17 C -0.163 4.163 18 C -0.179 4.179 19 C -0.135 4.135 20 C 0.044 3.956 21 O -0.385 6.385 22 C 0.043 3.957 23 H 0.114 0.886 24 H 0.020 0.980 25 H 0.067 0.933 26 H 0.412 0.588 27 H 0.026 0.974 28 H 0.040 0.960 29 H 0.263 0.737 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.757 -4.323 -12.681 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.276 6.276 3 C 0.027 3.973 4 C 0.274 3.726 5 O -0.461 6.461 6 N -0.334 5.334 7 C 0.048 3.952 8 C -0.020 4.020 9 C -0.611 4.611 10 H 0.071 0.929 11 C -0.218 4.218 12 N -0.567 5.567 13 Si 0.929 3.071 14 H -0.218 1.218 15 H -0.194 1.194 16 H -0.198 1.198 17 C -0.200 4.200 18 C -0.218 4.218 19 C -0.173 4.173 20 C -0.032 4.032 21 O -0.304 6.304 22 C -0.034 4.034 23 H 0.132 0.868 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.248 0.752 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.158 -3.976 -12.439 14.892 hybrid contribution 1.035 0.627 0.428 1.283 sum 8.192 -3.350 -12.011 14.920 Atomic orbital electron populations 1.23036 0.79653 1.04649 1.00515 1.87985 1.21102 1.23931 1.94624 1.23193 0.97799 0.84432 0.91917 1.21507 0.77064 0.87529 0.86481 1.90671 1.51420 1.16785 1.87266 1.45806 1.64876 1.15522 1.07213 1.20681 0.96512 0.93509 0.84505 1.19323 0.96088 0.96700 0.89855 1.21457 0.97401 0.93816 1.48445 0.92851 1.26999 0.97926 1.04085 0.92790 1.70846 1.38939 0.99739 1.47206 0.83058 0.74393 0.71824 0.77778 1.21828 1.19395 1.19795 1.22864 0.91605 1.00948 1.04542 1.22726 1.04675 0.97575 0.96776 1.23010 0.89010 1.05061 1.00225 1.23716 0.90747 0.92903 0.95845 1.89165 1.16867 1.36845 1.87532 1.23830 0.90376 0.95052 0.94165 0.86821 0.96092 0.91463 0.75211 0.95533 0.94165 0.92625 0.89327 0.89143 0.90301 0.91300 0.90076 0.85698 0.86822 0.88830 0.87911 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.43 113.37 1.18 1.64 16 2 O -0.36 -9.73 9.84 -148.98 -1.47 -11.19 16 3 C 0.07 2.02 1.02 -10.52 -0.01 2.01 16 4 C 0.49 18.63 5.36 87.66 0.47 19.10 16 5 O -0.58 -26.56 15.79 -3.01 -0.05 -26.61 16 6 N -0.69 -27.09 5.23 -463.05 -2.42 -29.51 16 7 C 0.17 7.90 5.39 86.38 0.47 8.37 16 8 C -0.02 -0.87 0.90 -52.93 -0.05 -0.92 16 9 C -0.57 -29.28 8.57 25.60 0.22 -29.06 16 10 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 11 C -0.02 -0.94 5.42 84.66 0.46 -0.48 16 12 N -0.93 -54.26 13.61 21.45 0.29 -53.96 16 13 Si 1.11 47.51 29.91 68.60 2.05 49.56 16 14 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 17 C -0.16 -6.39 9.96 30.59 0.30 -6.09 16 18 C -0.18 -7.91 8.97 30.59 0.27 -7.64 16 19 C -0.14 -2.99 6.53 31.61 0.21 -2.78 16 20 C 0.04 0.85 7.63 72.48 0.55 1.40 16 21 O -0.39 -10.87 11.65 -148.98 -1.74 -12.60 16 22 C 0.04 1.19 5.46 72.49 0.40 1.58 16 23 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.02 0.69 7.07 -2.38 -0.02 0.67 16 25 H 0.07 1.44 7.08 -2.38 -0.02 1.42 16 26 H 0.41 15.41 7.98 -92.71 -0.74 14.67 16 27 H 0.03 1.41 7.63 -2.39 -0.02 1.39 16 28 H 0.04 1.83 8.06 -2.38 -0.02 1.81 16 29 H 0.26 15.53 6.08 -92.71 -0.56 14.97 16 30 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 32 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 33 H 0.07 3.25 8.14 -2.38 -0.02 3.23 16 34 H 0.08 1.92 7.73 -2.39 -0.02 1.90 16 35 H 0.12 2.16 8.00 -2.39 -0.02 2.14 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.10 2.17 7.63 -2.39 -0.02 2.15 16 39 H 0.08 2.61 7.29 -2.38 -0.02 2.60 16 Total: -1.00 -66.33 322.34 1.66 -64.67 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.51 Total: 32.53 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 4.47 Total: -12.88 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.13 Total: -83.47 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -3.25 Total: -50.40 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.05 Total: 49.56 kcal Total: -66.33 1.66 -64.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404174613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.343 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds