Wall clock time and date at job start Mon Mar 30 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47363 * 270.00359 * 3 2 1 5 5 H 1.48499 * 109.47019 * 30.00063 * 3 2 1 6 6 H 1.48500 * 109.47335 * 150.00054 * 3 2 1 7 7 C 1.37877 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99874 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00192 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99978 * 180.02562 * 11 10 9 14 14 N 1.46908 * 109.47110 * 179.97438 * 13 11 10 15 15 C 1.46894 * 110.99811 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46921 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47601 * 179.97438 * 16 15 14 18 18 C 1.46768 * 124.34879 * 89.99607 * 17 16 15 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02849 * 17 16 15 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 0.97003 * 120.00141 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46983 * 60.00722 * 9 7 2 25 25 H 1.08996 * 109.47486 * 300.00096 * 9 7 2 26 26 H 0.97002 * 119.99786 * 0.02562 * 10 9 7 27 27 H 1.08999 * 109.47152 * 60.00086 * 13 11 10 28 28 H 1.08997 * 109.47486 * 300.00112 * 13 11 10 29 29 H 1.00906 * 110.99749 * 303.95452 * 14 13 11 30 30 H 1.08994 * 109.47610 * 60.00272 * 15 14 13 31 31 H 1.08998 * 109.47538 * 299.99652 * 15 14 13 32 32 H 1.09002 * 109.47341 * 59.99869 * 16 15 14 33 33 H 1.08998 * 109.47560 * 299.99749 * 16 15 14 34 34 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 35 35 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 36 36 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 37 37 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 38 38 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 39 39 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8833 -0.0025 12 8 0.5614 -5.1049 -0.0026 13 6 2.7331 -6.0287 -0.0032 14 7 1.9985 -7.3010 -0.0033 15 6 2.9230 -8.4425 -0.0034 16 6 2.1229 -9.7467 -0.0029 17 7 3.0448 -10.8853 -0.0035 18 6 3.5668 -11.5289 1.2078 19 6 4.7924 -12.3482 0.7462 20 6 4.4554 -12.6091 -0.7402 21 6 3.5239 -11.4771 -1.1137 22 8 3.2488 -11.1496 -2.2486 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.1567 -3.4354 -0.0021 27 1 3.3597 -5.9715 0.8868 28 1 3.3597 -5.9705 -0.8931 29 1 1.3623 -7.3513 0.7783 30 1 3.5509 -8.4017 0.8866 31 1 3.5510 -8.4016 -0.8933 32 1 1.4946 -9.7879 -0.8926 33 1 1.4953 -9.7876 0.8873 34 1 2.8134 -12.1878 1.6394 35 1 3.8691 -10.7752 1.9350 36 1 5.7091 -11.7664 0.8421 37 1 4.8666 -13.2844 1.2995 38 1 5.3597 -12.5754 -1.3480 39 1 3.9534 -13.5697 -0.8547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405409138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:09 Heat of formation + Delta-G solvation = -73.538192 kcal Electronic energy + Delta-G solvation = -19638.624154 eV Core-core repulsion = 16387.879797 eV Total energy + Delta-G solvation = -3250.744357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62753 -38.87064 -36.79946 -36.02663 -34.14313 -33.05720 -32.30530 -29.36482 -27.93137 -27.41288 -25.27782 -22.80485 -22.25627 -22.14523 -19.84015 -19.49750 -17.38725 -17.11304 -16.76803 -16.08843 -15.81678 -15.51288 -15.16833 -14.52249 -14.35122 -14.21970 -14.10543 -13.69449 -13.45442 -13.33473 -12.96341 -12.64870 -12.37687 -12.04187 -11.94737 -11.91479 -11.58093 -11.44807 -11.25558 -10.97799 -10.87186 -10.31661 -10.05097 -9.39457 -9.17543 -8.95298 -8.73169 -8.44314 -7.86466 -6.16230 -4.23227 2.30531 2.62729 3.24461 3.30358 3.32651 3.38523 3.86209 3.97088 4.04229 4.31724 4.36205 4.52602 4.61478 4.78597 4.86641 5.03890 5.10206 5.19726 5.22539 5.25073 5.34181 5.37054 5.47878 5.51246 5.60493 5.64262 5.75633 6.21809 6.79674 6.83649 7.30402 7.34383 7.45170 7.52981 7.67626 7.90044 7.97679 8.63695 8.78981 9.11824 9.43437 10.93989 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049616 B = 0.002484 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.193231 B =11269.541576 C =11370.370472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.497 3.503 12 O -0.543 6.543 13 C 0.043 3.957 14 N -0.669 5.669 15 C 0.046 3.954 16 C 0.127 3.873 17 N -0.620 5.620 18 C 0.100 3.900 19 C -0.132 4.132 20 C -0.155 4.155 21 C 0.513 3.487 22 O -0.526 6.526 23 H 0.266 0.734 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.390 0.610 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.351 0.649 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.613 -24.712 5.036 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.421 6.421 13 C -0.090 4.090 14 N -0.302 5.302 15 C -0.084 4.084 16 C 0.005 3.995 17 N -0.355 5.355 18 C -0.023 4.023 19 C -0.170 4.170 20 C -0.196 4.196 21 C 0.301 3.699 22 O -0.402 6.402 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.222 0.778 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.170 0.830 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.272 -24.483 3.755 26.815 hybrid contribution 1.260 1.138 1.020 1.980 sum 11.531 -23.345 4.775 26.472 Atomic orbital electron populations 1.69976 1.06109 1.27304 1.48874 1.24961 0.94925 0.99472 0.94720 0.86407 0.79573 0.82629 0.78241 1.20435 1.21008 1.19785 1.21227 0.93250 0.90476 1.53221 0.91919 1.19097 0.88298 0.81904 0.97738 1.46444 1.11102 1.06099 1.72694 1.20319 0.89508 0.84233 0.77902 1.90665 1.16641 1.84698 1.50114 1.21827 0.95665 0.89179 1.02331 1.59961 1.18864 0.99948 1.51425 1.22300 0.94917 0.90224 1.00993 1.21308 0.90864 0.83062 1.04255 1.48316 1.47517 1.32437 1.07258 1.22107 0.95854 0.96746 0.87635 1.22600 0.98066 1.01159 0.95182 1.22336 1.00726 0.98781 0.97714 1.21028 0.80945 0.83500 0.84439 1.90767 1.61161 1.67180 1.21057 0.92437 0.95498 0.95585 0.77780 0.92817 0.88513 0.82983 0.95226 0.90585 0.88710 0.90184 0.90919 0.90320 0.89912 0.89098 0.88015 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 10 N -0.71 -15.11 5.55 -61.47 -0.34 -15.46 16 11 C 0.50 9.97 7.87 -10.99 -0.09 9.88 16 12 O -0.54 -13.22 16.20 5.56 0.09 -13.13 16 13 C 0.04 0.61 6.17 -4.97 -0.03 0.58 16 14 N -0.67 -9.27 6.13 -115.06 -0.70 -9.98 16 15 C 0.05 0.50 6.01 -3.83 -0.02 0.48 16 16 C 0.13 1.26 6.20 -4.04 -0.03 1.24 16 17 N -0.62 -5.44 2.94 -172.35 -0.51 -5.94 16 18 C 0.10 0.49 7.34 -3.12 -0.02 0.47 16 19 C -0.13 -0.47 7.18 -25.10 -0.18 -0.65 16 20 C -0.16 -0.91 6.86 -26.74 -0.18 -1.10 16 21 C 0.51 5.47 8.03 -10.77 -0.09 5.38 16 22 O -0.53 -8.18 17.60 5.55 0.10 -8.08 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.35 4.78 8.43 -39.29 -0.33 4.45 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.16 7.93 -51.93 -0.41 0.75 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -35.71 334.82 -7.80 -43.51 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.11 Total: 4.19 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -1.08 Total: 9.46 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.82 Total: -56.93 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.19 Total: -21.21 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.71 -7.80 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405409138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.031 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds