Wall clock time and date at job start Mon Mar 30 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47363 * 270.00359 * 3 2 1 5 5 H 1.48499 * 109.47019 * 30.00063 * 3 2 1 6 6 H 1.48500 * 109.47335 * 150.00054 * 3 2 1 7 7 C 1.37877 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99874 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00192 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99978 * 180.02562 * 11 10 9 14 14 N 1.46908 * 109.47110 * 179.97438 * 13 11 10 15 15 C 1.46894 * 110.99811 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46921 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47601 * 179.97438 * 16 15 14 18 18 C 1.46768 * 124.34879 * 89.99607 * 17 16 15 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02849 * 17 16 15 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 0.97003 * 120.00141 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46983 * 60.00722 * 9 7 2 25 25 H 1.08996 * 109.47486 * 300.00096 * 9 7 2 26 26 H 0.97002 * 119.99786 * 0.02562 * 10 9 7 27 27 H 1.08999 * 109.47152 * 60.00086 * 13 11 10 28 28 H 1.08997 * 109.47486 * 300.00112 * 13 11 10 29 29 H 1.00906 * 110.99749 * 303.95452 * 14 13 11 30 30 H 1.08994 * 109.47610 * 60.00272 * 15 14 13 31 31 H 1.08998 * 109.47538 * 299.99652 * 15 14 13 32 32 H 1.09002 * 109.47341 * 59.99869 * 16 15 14 33 33 H 1.08998 * 109.47560 * 299.99749 * 16 15 14 34 34 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 35 35 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 36 36 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 37 37 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 38 38 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 39 39 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8833 -0.0025 12 8 0.5614 -5.1049 -0.0026 13 6 2.7331 -6.0287 -0.0032 14 7 1.9985 -7.3010 -0.0033 15 6 2.9230 -8.4425 -0.0034 16 6 2.1229 -9.7467 -0.0029 17 7 3.0448 -10.8853 -0.0035 18 6 3.5668 -11.5289 1.2078 19 6 4.7924 -12.3482 0.7462 20 6 4.4554 -12.6091 -0.7402 21 6 3.5239 -11.4771 -1.1137 22 8 3.2488 -11.1496 -2.2486 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.1567 -3.4354 -0.0021 27 1 3.3597 -5.9715 0.8868 28 1 3.3597 -5.9705 -0.8931 29 1 1.3623 -7.3513 0.7783 30 1 3.5509 -8.4017 0.8866 31 1 3.5510 -8.4016 -0.8933 32 1 1.4946 -9.7879 -0.8926 33 1 1.4953 -9.7876 0.8873 34 1 2.8134 -12.1878 1.6394 35 1 3.8691 -10.7752 1.9350 36 1 5.7091 -11.7664 0.8421 37 1 4.8666 -13.2844 1.2995 38 1 5.3597 -12.5754 -1.3480 39 1 3.9534 -13.5697 -0.8547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405409138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:08 Heat of formation + Delta-G solvation = -102.788551 kcal Electronic energy + Delta-G solvation = -19639.892545 eV Core-core repulsion = 16387.879797 eV Total energy + Delta-G solvation = -3252.012748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32110 -40.52941 -37.71062 -37.01236 -36.07807 -34.36276 -33.77936 -30.53952 -29.09788 -28.43540 -26.61403 -24.39036 -23.40108 -22.69674 -21.44423 -20.36725 -19.03382 -17.88882 -17.76401 -17.36637 -17.13504 -16.94674 -16.38210 -16.17379 -15.68579 -15.28862 -14.82280 -14.71628 -14.47468 -14.31159 -14.15070 -14.02213 -13.75234 -13.33616 -13.21103 -12.92208 -12.85646 -12.70573 -12.36401 -12.23217 -12.13486 -11.80837 -11.49484 -10.87002 -10.81225 -10.78088 -9.84801 -9.76475 -9.46216 -8.29796 -6.46610 1.42695 1.45341 1.52733 1.56460 1.75980 1.92721 2.30968 2.52650 3.05009 3.34091 3.44850 3.66878 3.89969 3.98651 4.02149 4.09643 4.26448 4.32536 4.38733 4.45230 4.68638 4.68932 4.78448 4.89464 4.91647 5.09974 5.12334 5.23407 5.25133 5.47748 5.53185 5.66854 5.83279 5.86084 6.14010 6.28549 6.64598 6.91924 7.13768 7.22829 7.49722 8.82472 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049616 B = 0.002484 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.193231 B =11269.541576 C =11370.370472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.708 5.708 11 C 0.492 3.508 12 O -0.591 6.591 13 C 0.060 3.940 14 N -0.691 5.691 15 C 0.058 3.942 16 C 0.128 3.872 17 N -0.619 5.619 18 C 0.092 3.908 19 C -0.120 4.120 20 C -0.149 4.149 21 C 0.496 3.504 22 O -0.591 6.591 23 H 0.269 0.731 24 H -0.016 1.016 25 H -0.011 1.011 26 H 0.409 0.591 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.351 0.649 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.688 -25.522 6.753 30.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.359 5.359 11 C 0.279 3.721 12 O -0.472 6.472 13 C -0.072 4.072 14 N -0.325 5.325 15 C -0.072 4.072 16 C 0.005 3.995 17 N -0.352 5.352 18 C -0.029 4.029 19 C -0.157 4.157 20 C -0.189 4.189 21 C 0.286 3.714 22 O -0.471 6.471 23 H 0.078 0.922 24 H 0.002 0.998 25 H 0.007 0.993 26 H 0.245 0.755 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.171 0.829 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.412 -25.340 5.521 29.197 hybrid contribution 0.240 1.306 0.508 1.422 sum 13.652 -24.034 6.029 28.291 Atomic orbital electron populations 1.70142 1.08310 1.28579 1.49974 1.26097 0.95800 1.04005 0.93872 0.85136 0.78510 0.76878 0.78558 1.19729 1.20924 1.17777 1.21625 0.94334 0.90556 1.52863 0.89733 1.18530 0.88723 0.84382 0.94017 1.46175 1.11226 1.05501 1.73017 1.21388 0.89923 0.84950 0.75804 1.90643 1.19302 1.85392 1.51889 1.21719 0.93998 0.86728 1.04799 1.59906 1.19991 1.00540 1.52027 1.22199 0.94419 0.89294 1.01288 1.21189 0.91095 0.83493 1.03731 1.48489 1.46603 1.31646 1.08444 1.22443 0.96854 0.97428 0.86181 1.22649 0.97490 1.02337 0.93229 1.22378 0.99708 0.97249 0.99550 1.21977 0.81146 0.84408 0.83860 1.90721 1.63532 1.69280 1.23595 0.92246 0.99805 0.99304 0.75541 0.89074 0.86845 0.82913 0.92487 0.92306 0.92033 0.87971 0.89332 0.88852 0.89264 0.86222 0.87578 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.99 42.50 29.54 68.60 2.03 44.52 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.56 -30.44 9.28 25.60 0.24 -30.21 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.82 5.43 85.63 0.46 15.29 16 10 N -0.71 -30.05 5.55 -466.79 -2.59 -32.64 16 11 C 0.49 19.82 7.87 87.66 0.69 20.51 16 12 O -0.59 -29.79 16.20 -3.03 -0.05 -29.84 16 13 C 0.06 1.60 6.17 85.56 0.53 2.13 16 14 N -0.69 -18.50 6.13 -517.94 -3.17 -21.67 16 15 C 0.06 1.18 6.01 86.30 0.52 1.69 16 16 C 0.13 2.47 6.20 86.38 0.54 3.00 16 17 N -0.62 -10.03 2.94 -817.66 -2.40 -12.43 16 18 C 0.09 0.61 7.34 86.83 0.64 1.24 16 19 C -0.12 -0.41 7.18 31.65 0.23 -0.18 16 20 C -0.15 -1.45 6.86 30.59 0.21 -1.25 16 21 C 0.50 10.47 8.03 87.87 0.71 11.17 16 22 O -0.59 -19.35 17.60 -3.05 -0.05 -19.40 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.41 14.08 8.32 -92.71 -0.77 13.31 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.11 2.73 8.14 -2.39 -0.02 2.72 16 29 H 0.35 9.32 8.43 -89.69 -0.76 8.56 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.60 7.93 -2.39 -0.02 1.58 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -83.16 334.82 -1.21 -84.38 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -0.47 Total: 19.58 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 5.22 Total: 23.97 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -7.88 Total: -123.21 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.10 Total: -49.24 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -83.16 -1.21 -84.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405409138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.411 kcal (2) G-P(sol) polarization free energy of solvation -83.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds