Wall clock time and date at job start Mon Mar 30 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48500 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47330 * 299.99894 * 3 2 1 6 6 H 1.48507 * 109.47083 * 59.99535 * 3 2 1 7 7 C 1.38944 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00649 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00293 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99898 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99903 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47010 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99793 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 14 13 17 17 C 1.45752 * 117.94855 * 269.73829 * 16 15 14 18 18 C 1.53112 * 110.38639 * 160.74477 * 17 16 15 19 19 C 1.53342 * 108.52394 * 51.11555 * 18 17 16 20 20 C 1.53063 * 108.42892 * 292.30574 * 19 18 17 21 21 C 1.33357 * 117.94563 * 90.00621 * 16 15 14 22 22 O 1.21285 * 118.24470 * 2.23689 * 21 16 15 23 23 H 0.97003 * 120.00211 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99803 * 0.02562 * 9 7 2 25 25 H 1.09006 * 109.47061 * 60.01026 * 12 10 9 26 26 H 1.08995 * 109.47155 * 300.00263 * 12 10 9 27 27 H 1.00899 * 110.99995 * 303.95651 * 13 12 10 28 28 H 1.09001 * 109.46874 * 60.00179 * 14 13 12 29 29 H 1.08992 * 109.47407 * 300.00197 * 14 13 12 30 30 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 31 31 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 32 32 H 1.08998 * 109.30430 * 281.23988 * 17 16 15 33 33 H 1.09001 * 109.30044 * 40.61593 * 17 16 15 34 34 H 1.08995 * 109.80306 * 291.32708 * 18 17 16 35 35 H 1.08996 * 109.67583 * 170.82463 * 18 17 16 36 36 H 1.09010 * 109.66858 * 172.57659 * 19 18 17 37 37 H 1.09003 * 109.70583 * 52.06309 * 19 18 17 38 38 H 1.08993 * 109.40730 * 288.77799 * 20 19 18 39 39 H 1.08998 * 109.33317 * 168.98650 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.4980 -7.2708 -0.0005 15 6 2.5230 -8.4068 -0.0003 16 7 1.8246 -9.6946 -0.0008 17 6 1.5036 -10.2981 1.2864 18 6 0.3972 -11.3440 1.1241 19 6 0.7959 -12.3040 -0.0032 20 6 0.7724 -11.5338 -1.3257 21 6 1.5272 -10.2438 -1.1791 22 8 1.8858 -9.6709 -2.1862 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3907 -0.0002 25 1 0.6175 -4.9205 -0.8904 26 1 0.6167 -4.9208 0.8896 27 1 2.8339 -5.9124 -0.7801 28 1 0.8742 -7.3450 -0.8912 29 1 0.8722 -7.3455 0.8887 30 1 3.1486 -8.3319 -0.8898 31 1 3.1472 -8.3328 0.8902 32 1 2.3959 -10.7729 1.6944 33 1 1.1658 -9.5225 1.9738 34 1 -0.5417 -10.8519 0.8705 35 1 0.2790 -11.9006 2.0537 36 1 0.0878 -13.1316 -0.0479 37 1 1.7992 -12.6890 0.1795 38 1 -0.2601 -11.3198 -1.6018 39 1 1.2373 -12.1388 -2.1040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405412264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:04 Heat of formation + Delta-G solvation = -77.577378 kcal Electronic energy + Delta-G solvation = -20112.407795 eV Core-core repulsion = 16861.488285 eV Total energy + Delta-G solvation = -3250.919509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69024 -38.25624 -36.73068 -35.95614 -34.12352 -33.61259 -31.20216 -30.04827 -29.18175 -26.15319 -24.80599 -23.93898 -22.77887 -21.66507 -19.28081 -18.81256 -17.86499 -16.85823 -16.69796 -16.29735 -15.67816 -15.45720 -14.64664 -14.57382 -14.48565 -14.25965 -13.85525 -13.69728 -13.52262 -13.28126 -12.96566 -12.30440 -12.12228 -11.99442 -11.63475 -11.53986 -11.48188 -11.41589 -11.28124 -11.07845 -10.92329 -10.32166 -10.20130 -9.82761 -9.49534 -8.93271 -8.42583 -8.04752 -7.93333 -6.39310 -3.79993 2.47682 2.76139 3.18389 3.28689 3.36397 3.93905 4.15267 4.24720 4.33233 4.35465 4.40703 4.49643 4.96066 4.97961 5.03968 5.14887 5.21546 5.24959 5.30880 5.33242 5.40589 5.47332 5.51654 5.55940 5.75283 5.80439 5.89472 5.95534 6.02221 6.22839 6.32335 7.21592 7.28388 7.57917 7.67456 8.00870 8.09226 8.64007 9.20518 9.57064 10.08596 10.78646 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049461 B = 0.002804 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.970279 B = 9983.255857 C =10050.220255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.666 5.666 14 C 0.048 3.952 15 C 0.108 3.892 16 N -0.601 5.601 17 C 0.111 3.889 18 C -0.137 4.137 19 C -0.124 4.124 20 C -0.134 4.134 21 C 0.512 3.488 22 O -0.552 6.552 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.351 0.649 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -24.102 2.845 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.299 5.299 14 C -0.082 4.082 15 C -0.015 4.015 16 N -0.334 5.334 17 C -0.012 4.012 18 C -0.175 4.175 19 C -0.162 4.162 20 C -0.174 4.174 21 C 0.301 3.699 22 O -0.430 6.430 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.148 -23.650 3.005 23.936 hybrid contribution -0.742 0.845 -0.775 1.366 sum -2.890 -22.805 2.230 23.095 Atomic orbital electron populations 1.69626 1.05946 1.28022 1.50823 1.25268 0.95645 0.99736 0.97394 0.85794 0.79722 0.81112 0.77677 1.19200 1.20776 1.20755 1.19762 0.93413 0.82217 1.47343 0.87851 1.41867 1.09207 1.04605 1.64457 1.19798 0.88379 0.84703 0.84382 1.90523 1.13743 1.87072 1.55315 1.21659 0.94331 0.90874 1.01200 1.60036 1.18814 0.99685 1.51403 1.22208 0.96100 0.89388 1.00541 1.21472 0.94706 0.80995 1.04330 1.47305 1.58345 1.21786 1.05974 1.21481 0.98303 0.96559 0.84816 1.21928 0.98614 0.97007 0.99941 1.21667 1.02712 0.98159 0.93628 1.21660 1.01980 0.94051 0.99717 1.20196 0.79800 0.87043 0.82878 1.90746 1.53201 1.63255 1.35808 0.91950 0.77463 0.93831 0.89647 0.82940 0.95213 0.91250 0.89377 0.89421 0.91465 0.90239 0.90805 0.89686 0.90563 0.91077 0.88333 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.98 13.05 55.50 0.72 -24.25 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 8 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 9 N -0.56 -14.72 5.29 -10.96 -0.06 -14.77 16 10 C 0.44 10.81 7.82 -10.99 -0.09 10.73 16 11 O -0.58 -16.29 15.78 5.54 0.09 -16.20 16 12 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 13 N -0.67 -11.49 6.13 -115.05 -0.70 -12.19 16 14 C 0.05 0.67 6.00 -3.82 -0.02 0.64 16 15 C 0.11 1.32 5.48 -4.04 -0.02 1.30 16 16 N -0.60 -6.20 2.81 -174.84 -0.49 -6.69 16 17 C 0.11 0.75 6.32 -4.39 -0.03 0.73 16 18 C -0.14 -0.68 6.03 -26.50 -0.16 -0.84 16 19 C -0.12 -0.62 6.03 -26.52 -0.16 -0.78 16 20 C -0.13 -1.01 6.03 -28.10 -0.17 -1.18 16 21 C 0.51 6.04 7.46 -11.87 -0.09 5.95 16 22 O -0.55 -9.03 16.18 5.55 0.09 -8.94 16 23 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.39 9.76 7.90 -40.82 -0.32 9.43 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.35 6.38 8.43 -39.29 -0.33 6.05 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.25 7.14 -51.93 -0.37 0.88 16 31 H 0.09 0.98 8.01 -51.93 -0.42 0.56 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 37 H 0.07 0.36 8.13 -51.93 -0.42 -0.07 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -34.26 327.20 -7.47 -41.73 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.02 Total: 10.71 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -1.01 Total: 9.32 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.53 Total: -57.91 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.18 Total: -25.14 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.26 -7.47 -41.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405412264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.845 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds