Wall clock time and date at job start Mon Mar 30 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48500 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47330 * 299.99894 * 3 2 1 6 6 H 1.48507 * 109.47083 * 59.99535 * 3 2 1 7 7 C 1.38944 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00649 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00293 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99898 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99903 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47010 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99793 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 14 13 17 17 C 1.45752 * 117.94855 * 269.73829 * 16 15 14 18 18 C 1.53112 * 110.38639 * 160.74477 * 17 16 15 19 19 C 1.53342 * 108.52394 * 51.11555 * 18 17 16 20 20 C 1.53063 * 108.42892 * 292.30574 * 19 18 17 21 21 C 1.33357 * 117.94563 * 90.00621 * 16 15 14 22 22 O 1.21285 * 118.24470 * 2.23689 * 21 16 15 23 23 H 0.97003 * 120.00211 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99803 * 0.02562 * 9 7 2 25 25 H 1.09006 * 109.47061 * 60.01026 * 12 10 9 26 26 H 1.08995 * 109.47155 * 300.00263 * 12 10 9 27 27 H 1.00899 * 110.99995 * 303.95651 * 13 12 10 28 28 H 1.09001 * 109.46874 * 60.00179 * 14 13 12 29 29 H 1.08992 * 109.47407 * 300.00197 * 14 13 12 30 30 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 31 31 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 32 32 H 1.08998 * 109.30430 * 281.23988 * 17 16 15 33 33 H 1.09001 * 109.30044 * 40.61593 * 17 16 15 34 34 H 1.08995 * 109.80306 * 291.32708 * 18 17 16 35 35 H 1.08996 * 109.67583 * 170.82463 * 18 17 16 36 36 H 1.09010 * 109.66858 * 172.57659 * 19 18 17 37 37 H 1.09003 * 109.70583 * 52.06309 * 19 18 17 38 38 H 1.08993 * 109.40730 * 288.77799 * 20 19 18 39 39 H 1.08998 * 109.33317 * 168.98650 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.4980 -7.2708 -0.0005 15 6 2.5230 -8.4068 -0.0003 16 7 1.8246 -9.6946 -0.0008 17 6 1.5036 -10.2981 1.2864 18 6 0.3972 -11.3440 1.1241 19 6 0.7959 -12.3040 -0.0032 20 6 0.7724 -11.5338 -1.3257 21 6 1.5272 -10.2438 -1.1791 22 8 1.8858 -9.6709 -2.1862 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3907 -0.0002 25 1 0.6175 -4.9205 -0.8904 26 1 0.6167 -4.9208 0.8896 27 1 2.8339 -5.9124 -0.7801 28 1 0.8742 -7.3450 -0.8912 29 1 0.8722 -7.3455 0.8887 30 1 3.1486 -8.3319 -0.8898 31 1 3.1472 -8.3328 0.8902 32 1 2.3959 -10.7729 1.6944 33 1 1.1658 -9.5225 1.9738 34 1 -0.5417 -10.8519 0.8705 35 1 0.2790 -11.9006 2.0537 36 1 0.0878 -13.1316 -0.0479 37 1 1.7992 -12.6890 0.1795 38 1 -0.2601 -11.3198 -1.6018 39 1 1.2373 -12.1388 -2.1040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405412264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:03 Heat of formation + Delta-G solvation = -103.836563 kcal Electronic energy + Delta-G solvation = -20113.546478 eV Core-core repulsion = 16861.488285 eV Total energy + Delta-G solvation = -3252.058193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52931 -40.18440 -37.65697 -37.11000 -35.94871 -34.76695 -33.29139 -30.79106 -30.30090 -27.74887 -25.92486 -25.16609 -23.73759 -22.53775 -21.14707 -19.95966 -19.50722 -17.95137 -17.68921 -17.58293 -17.03710 -16.57438 -16.43480 -15.94810 -15.49710 -15.22264 -15.20361 -14.91168 -14.65781 -14.24325 -14.00494 -13.84673 -13.55948 -13.38726 -13.01012 -12.82998 -12.66169 -12.42464 -12.24349 -12.12905 -12.11860 -11.79579 -11.74080 -11.53613 -10.69748 -10.41960 -10.04301 -9.77104 -9.47531 -8.48724 -5.97860 1.35746 1.41116 1.55675 1.58654 1.93504 2.01167 2.28786 2.94779 3.18029 3.48224 3.62753 3.87418 3.92459 3.96373 4.00007 4.09921 4.26576 4.43019 4.44528 4.52405 4.53804 4.57112 4.66178 4.79672 4.86631 4.91128 4.98336 5.10606 5.16005 5.37547 5.39216 5.41825 5.80360 6.03256 6.23383 6.47734 6.57068 7.09943 7.13783 7.52470 8.07609 8.69041 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049461 B = 0.002804 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.970279 B = 9983.255857 C =10050.220255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.059 3.941 15 C 0.113 3.887 16 N -0.596 5.596 17 C 0.102 3.898 18 C -0.132 4.132 19 C -0.118 4.118 20 C -0.130 4.130 21 C 0.502 3.498 22 O -0.609 6.609 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.060 0.940 26 H 0.110 0.890 27 H 0.342 0.658 28 H 0.017 0.983 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 -25.279 4.155 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.067 4.067 13 N -0.307 5.307 14 C -0.071 4.071 15 C -0.011 4.011 16 N -0.328 5.328 17 C -0.019 4.019 18 C -0.170 4.170 19 C -0.155 4.155 20 C -0.169 4.169 21 C 0.292 3.708 22 O -0.492 6.492 23 H 0.088 0.912 24 H 0.231 0.769 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.161 0.839 28 H 0.035 0.965 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.379 -24.865 4.359 25.469 hybrid contribution -0.377 1.166 -1.160 1.688 sum -3.756 -23.698 3.199 24.206 Atomic orbital electron populations 1.69682 1.06865 1.29327 1.50268 1.26076 0.96583 1.02495 0.96164 0.84845 0.78001 0.76918 0.78403 1.19795 1.19564 1.19394 1.19718 0.92729 0.83976 1.49965 0.90304 1.41926 1.09359 1.04703 1.64928 1.20788 0.88234 0.86093 0.82366 1.90491 1.15799 1.87932 1.56672 1.21536 0.93958 0.88110 1.03058 1.60068 1.18890 1.00685 1.51085 1.22199 0.96173 0.88045 1.00721 1.21292 0.94378 0.81798 1.03668 1.47433 1.57321 1.20834 1.07174 1.21810 0.99818 0.97367 0.82933 1.21949 0.97499 0.96475 1.01073 1.21676 1.03602 0.98367 0.91885 1.21700 1.01582 0.92050 1.01608 1.21050 0.79307 0.88042 0.82360 1.90718 1.55649 1.65066 1.37761 0.91223 0.76934 0.92212 0.87217 0.83942 0.96476 0.89301 0.91970 0.88131 0.90100 0.89534 0.91047 0.87136 0.88274 0.90859 0.87389 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 2 C -0.01 -0.73 5.50 84.92 0.47 -0.27 16 3 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.33 -19.44 9.68 84.04 0.81 -18.62 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.57 -30.26 5.29 -306.98 -1.62 -31.88 16 10 C 0.44 21.70 7.82 87.66 0.69 22.39 16 11 O -0.62 -35.77 15.78 -3.08 -0.05 -35.82 16 12 C 0.07 2.41 6.17 85.56 0.53 2.94 16 13 N -0.68 -23.11 6.13 -517.92 -3.17 -26.28 16 14 C 0.06 1.57 6.00 86.30 0.52 2.09 16 15 C 0.11 2.73 5.48 86.38 0.47 3.20 16 16 N -0.60 -11.71 2.81 -826.26 -2.32 -14.03 16 17 C 0.10 1.12 6.32 86.56 0.55 1.67 16 18 C -0.13 -0.86 6.03 30.75 0.19 -0.68 16 19 C -0.12 -0.83 6.03 30.73 0.19 -0.64 16 20 C -0.13 -1.77 6.03 29.71 0.18 -1.59 16 21 C 0.50 11.71 7.46 87.71 0.65 12.37 16 22 O -0.61 -20.73 16.18 -3.05 -0.05 -20.78 16 23 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 24 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 25 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.34 12.77 8.43 -89.69 -0.76 12.01 16 28 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.85 7.14 -2.39 -0.02 1.83 16 31 H 0.10 2.16 8.01 -2.39 -0.02 2.14 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 35 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.07 0.52 8.13 -2.39 -0.02 0.50 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.87 327.20 -0.10 -75.97 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -0.43 Total: 34.48 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 5.24 Total: 22.85 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -6.84 Total: -122.30 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.10 Total: -56.60 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.87 -0.10 -75.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405412264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.871 kcal (2) G-P(sol) polarization free energy of solvation -75.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds