Wall clock time and date at job start Mon Mar 30 2020 05:23:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31411 * 1
3 3 Si 1.86795 * 119.99805 * 2 1
4 4 H 1.48500 * 109.47212 * 270.00362 * 3 2 1
5 5 H 1.48501 * 109.47214 * 30.00121 * 3 2 1
6 6 H 1.48501 * 109.47464 * 150.00233 * 3 2 1
7 7 C 1.38950 * 120.00067 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99750 * 359.97438 * 7 2 1
9 9 N 1.37097 * 119.99994 * 179.97438 * 7 2 1
10 10 C 1.34768 * 120.00291 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99769 * 359.97438 * 10 9 7
12 12 C 1.50701 * 120.00505 * 180.02562 * 10 9 7
13 13 N 1.46893 * 109.47357 * 179.97438 * 12 10 9
14 14 C 1.46593 * 111.00245 * 293.95192 * 13 12 10
15 15 C 1.53714 * 110.97468 * 179.97438 * 14 13 12
16 16 N 1.45485 * 107.62346 * 55.90811 * 15 14 13
17 17 C 1.46049 * 117.98528 * 176.43382 * 16 15 14
18 18 C 1.54883 * 105.84757 * 152.36705 * 17 16 15
19 19 H 1.08998 * 110.34073 * 237.21967 * 18 17 16
20 20 O 1.42896 * 110.43346 * 115.00523 * 18 17 16
21 21 C 1.55410 * 104.96842 * 356.08677 * 18 17 16
22 22 C 1.48786 * 109.30193 * 296.83064 * 16 15 14
23 23 H 1.09004 * 111.64372 * 306.34467 * 22 16 15
24 24 C 1.47566 * 110.99866 * 167.79032 * 13 12 10
25 25 H 0.96998 * 120.00266 * 359.97438 * 1 2 3
26 26 H 0.97005 * 119.99850 * 0.02562 * 9 7 2
27 27 H 1.09004 * 109.46962 * 59.99380 * 12 10 9
28 28 H 1.09004 * 109.47040 * 300.00187 * 12 10 9
29 29 H 1.09003 * 109.18011 * 59.60863 * 14 13 12
30 30 H 1.08998 * 109.13990 * 300.34740 * 14 13 12
31 31 H 1.09002 * 109.84055 * 175.45819 * 15 14 13
32 32 H 1.09000 * 109.83732 * 296.35956 * 15 14 13
33 33 H 1.08999 * 110.13731 * 33.28587 * 17 16 15
34 34 H 1.09002 * 110.26939 * 271.50819 * 17 16 15
35 35 H 0.96699 * 113.99981 * 64.39896 * 20 18 17
36 36 H 1.09007 * 110.92732 * 219.55354 * 21 18 17
37 37 H 1.09002 * 110.95755 * 95.91713 * 21 18 17
38 38 H 1.08995 * 109.86325 * 302.41751 * 24 13 12
39 39 H 1.09002 * 109.86248 * 63.45144 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6177 0.0000
4 1 2.4955 2.0465 -1.4001
5 1 1.4455 2.6526 0.7001
6 1 3.5457 1.4403 0.7000
7 6 2.0089 -1.2033 -0.0005
8 1 1.4689 -2.1386 -0.0005
9 7 3.3799 -1.2033 -0.0011
10 6 4.0538 -2.3704 -0.0011
11 8 3.4473 -3.4209 -0.0001
12 6 5.5608 -2.3704 -0.0011
13 7 6.0504 -3.7553 -0.0004
14 6 5.7018 -4.4353 1.2505
15 6 6.2139 -5.8847 1.2502
16 7 7.6475 -5.8452 1.0056
17 6 8.3832 -7.1064 1.0379
18 6 9.6027 -6.9087 0.1038
19 1 9.6045 -7.6640 -0.6821
20 8 10.8189 -6.9685 0.8517
21 6 9.4141 -5.4927 -0.5084
22 6 7.9005 -5.2728 -0.3442
23 1 7.3431 -5.8027 -1.1166
24 6 7.4962 -3.8052 -0.2918
25 1 -0.4850 0.8400 0.0004
26 1 3.8648 -0.3632 -0.0007
27 1 5.9241 -1.8565 0.8889
28 1 5.9241 -1.8566 -0.8911
29 1 4.6179 -4.4389 1.3662
30 1 6.1492 -3.8975 2.0864
31 1 6.0162 -6.3471 2.2173
32 1 5.7195 -6.4515 0.4614
33 1 7.7547 -7.9170 0.6692
34 1 8.7180 -7.3225 2.0524
35 1 10.9893 -7.8296 1.2573
36 1 9.6971 -5.4828 -1.5610
37 1 9.9788 -4.7474 0.0517
38 1 7.6969 -3.3312 -1.2526
39 1 8.0506 -3.2958 0.4965
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000405673094.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:05
Heat of formation + Delta-G solvation = -53.910265 kcal
Electronic energy + Delta-G solvation = -21044.094065 eV
Core-core repulsion = 17794.200839 eV
Total energy + Delta-G solvation = -3249.893226 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.23733 -38.53353 -37.04051 -35.14174 -33.84342 -32.43682 -31.64976 -29.91774
-28.15740 -26.83951 -24.38978 -23.18340 -22.08355 -21.05488 -19.87022 -19.31523
-18.22410 -17.39720 -16.18645 -15.99905 -15.85530 -15.08982 -14.97488 -14.79782
-14.21902 -14.11286 -13.59850 -13.38796 -13.25058 -13.06025 -12.66238 -12.37985
-12.12773 -12.00536 -11.72808 -11.52410 -11.24721 -11.05633 -10.99645 -10.73073
-10.59632 -10.57242 -10.24589 -9.96135 -9.51818 -8.58134 -8.37911 -8.16249
-7.84885 -6.29701 -3.80919 3.04254 3.08387 3.16418 3.69900 3.76861
3.85225 4.06424 4.12045 4.34314 4.51702 4.77008 4.85483 5.02930
5.13036 5.21649 5.24093 5.34611 5.35969 5.50776 5.53828 5.57835
5.69545 5.74004 5.77531 5.82486 5.83563 5.95588 6.04351 6.22098
6.40289 6.79472 7.09296 7.26924 7.35486 7.41381 7.60766 8.16482
8.62271 8.97047 9.44433 9.85853 10.83514
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.049347 B = 0.003703 C = 0.003541
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 567.271291 B = 7558.604002 C = 7904.362225
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.883 5.883
2 C 0.041 3.959
3 Si 0.880 3.120
4 H -0.271 1.271
5 H -0.277 1.277
6 H -0.269 1.269
7 C -0.304 4.304
8 H 0.119 0.881
9 N -0.592 5.592
10 C 0.453 3.547
11 O -0.560 6.560
12 C 0.047 3.953
13 N -0.526 5.526
14 C 0.061 3.939
15 C 0.066 3.934
16 N -0.539 5.539
17 C 0.022 3.978
18 C 0.097 3.903
19 H 0.063 0.937
20 O -0.560 6.560
21 C -0.106 4.106
22 C 0.069 3.931
23 H 0.067 0.933
24 C 0.072 3.928
25 H 0.273 0.727
26 H 0.370 0.630
27 H 0.049 0.951
28 H 0.090 0.910
29 H 0.108 0.892
30 H 0.029 0.971
31 H 0.076 0.924
32 H 0.044 0.956
33 H 0.042 0.958
34 H 0.082 0.918
35 H 0.376 0.624
36 H 0.078 0.922
37 H 0.087 0.913
38 H 0.078 0.922
39 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.033 -9.763 0.651 22.295
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.162 4.162
3 Si 0.706 3.294
4 H -0.196 1.196
5 H -0.202 1.202
6 H -0.195 1.195
7 C -0.432 4.432
8 H 0.137 0.863
9 N -0.231 5.231
10 C 0.239 3.761
11 O -0.442 6.442
12 C -0.084 4.084
13 N -0.251 5.251
14 C -0.067 4.067
15 C -0.062 4.062
16 N -0.265 5.265
17 C -0.106 4.106
18 C 0.037 3.963
19 H 0.081 0.919
20 O -0.365 6.365
21 C -0.144 4.144
22 C -0.039 4.039
23 H 0.085 0.915
24 C -0.056 4.056
25 H 0.084 0.916
26 H 0.203 0.797
27 H 0.067 0.933
28 H 0.108 0.892
29 H 0.126 0.874
30 H 0.048 0.952
31 H 0.095 0.905
32 H 0.062 0.938
33 H 0.060 0.940
34 H 0.100 0.900
35 H 0.223 0.777
36 H 0.097 0.903
37 H 0.106 0.894
38 H 0.097 0.903
39 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 19.366 -9.702 0.511 21.666
hybrid contribution 0.476 0.689 0.280 0.883
sum 19.841 -9.013 0.791 21.807
Atomic orbital electron populations
1.69621 1.05650 1.27471 1.49534 1.25034 0.95483 0.97973 0.97690
0.86672 0.79779 0.84049 0.78894 1.19613 1.20225 1.19496 1.19424
0.79246 0.96601 1.47978 0.86295 1.42215 1.07514 1.06167 1.67209
1.19684 0.88145 0.84497 0.83777 1.90513 1.69424 1.30798 1.53489
1.21831 0.95348 0.89597 1.01639 1.61132 1.13028 1.14894 1.36009
1.22295 1.02999 0.92380 0.88977 1.22026 0.85765 0.97515 1.00869
1.62671 1.12339 1.23445 1.28092 1.23206 0.95386 0.91297 1.00746
1.22975 0.83380 0.97929 0.91979 0.91897 1.86560 1.40719 1.38361
1.70829 1.22360 0.95443 0.95902 1.00733 1.22564 0.94610 0.96223
0.90479 0.91514 1.22026 0.87950 0.94795 1.00794 0.91643 0.79715
0.93297 0.89217 0.87393 0.95250 0.90529 0.93791 0.94000 0.89961
0.77660 0.90310 0.89414 0.90330 0.93824
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16
2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16
3 Si 0.88 19.44 27.74 -169.99 -4.71 14.73 16
4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
6 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16
7 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16
8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16
9 N -0.59 -14.13 5.09 -10.96 -0.06 -14.18 16
10 C 0.45 10.31 7.50 -10.99 -0.08 10.23 16
11 O -0.56 -14.85 13.88 5.54 0.08 -14.77 16
12 C 0.05 0.81 5.47 -4.98 -0.03 0.78 16
13 N -0.53 -8.70 4.35 -235.73 -1.03 -9.72 16
14 C 0.06 1.02 5.26 -3.62 -0.02 1.00 16
15 C 0.07 0.93 6.04 -4.22 -0.03 0.90 16
16 N -0.54 -6.82 4.64 -225.21 -1.05 -7.87 16
17 C 0.02 0.22 6.69 -3.29 -0.02 0.20 16
18 C 0.10 0.88 4.39 -24.46 -0.11 0.77 16
19 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
20 O -0.56 -5.10 13.30 -35.23 -0.47 -5.56 16
21 C -0.11 -1.06 6.36 -25.02 -0.16 -1.22 16
22 C 0.07 0.84 2.75 -66.59 -0.18 0.65 16
23 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16
24 C 0.07 0.95 5.24 -3.81 -0.02 0.93 16
25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
26 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16
27 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16
28 H 0.09 1.33 8.01 -51.93 -0.42 0.92 16
29 H 0.11 2.14 5.84 -51.93 -0.30 1.83 16
30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
32 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16
33 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16
34 H 0.08 0.78 7.99 -51.93 -0.41 0.37 16
35 H 0.38 1.74 9.12 45.56 0.42 2.15 16
36 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16
37 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16
38 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16
39 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16
LS Contribution 310.72 15.07 4.68 4.68
Total: -1.00 -33.33 310.72 -7.81 -41.15
By element:
Atomic # 1 Polarization: 15.26 SS G_CDS: -5.14 Total: 10.12 kcal
Atomic # 6 Polarization: 7.42 SS G_CDS: -0.89 Total: 6.53 kcal
Atomic # 7 Polarization: -55.52 SS G_CDS: -1.35 Total: -56.87 kcal
Atomic # 8 Polarization: -19.94 SS G_CDS: -0.39 Total: -20.34 kcal
Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.73 kcal
Total LS contribution 4.68 Total: 4.68 kcal
Total: -33.33 -7.81 -41.15 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000405673094.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.763 kcal
(2) G-P(sol) polarization free energy of solvation -33.333 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds