Wall clock time and date at job start Mon Mar 30 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99805 * 2 1 4 4 H 1.48500 * 109.47212 * 270.00362 * 3 2 1 5 5 H 1.48501 * 109.47214 * 30.00121 * 3 2 1 6 6 H 1.48501 * 109.47464 * 150.00233 * 3 2 1 7 7 C 1.38950 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99750 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.34768 * 120.00291 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99769 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00505 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47357 * 179.97438 * 12 10 9 14 14 C 1.46593 * 111.00245 * 293.95192 * 13 12 10 15 15 C 1.53714 * 110.97468 * 179.97438 * 14 13 12 16 16 N 1.45485 * 107.62346 * 55.90811 * 15 14 13 17 17 C 1.46049 * 117.98528 * 176.43382 * 16 15 14 18 18 C 1.54883 * 105.84757 * 152.36705 * 17 16 15 19 19 H 1.08998 * 110.34073 * 237.21967 * 18 17 16 20 20 O 1.42896 * 110.43346 * 115.00523 * 18 17 16 21 21 C 1.55410 * 104.96842 * 356.08677 * 18 17 16 22 22 C 1.48786 * 109.30193 * 296.83064 * 16 15 14 23 23 H 1.09004 * 111.64372 * 306.34467 * 22 16 15 24 24 C 1.47566 * 110.99866 * 167.79032 * 13 12 10 25 25 H 0.96998 * 120.00266 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99850 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46962 * 59.99380 * 12 10 9 28 28 H 1.09004 * 109.47040 * 300.00187 * 12 10 9 29 29 H 1.09003 * 109.18011 * 59.60863 * 14 13 12 30 30 H 1.08998 * 109.13990 * 300.34740 * 14 13 12 31 31 H 1.09002 * 109.84055 * 175.45819 * 15 14 13 32 32 H 1.09000 * 109.83732 * 296.35956 * 15 14 13 33 33 H 1.08999 * 110.13731 * 33.28587 * 17 16 15 34 34 H 1.09002 * 110.26939 * 271.50819 * 17 16 15 35 35 H 0.96699 * 113.99981 * 64.39896 * 20 18 17 36 36 H 1.09007 * 110.92732 * 219.55354 * 21 18 17 37 37 H 1.09002 * 110.95755 * 95.91713 * 21 18 17 38 38 H 1.08995 * 109.86325 * 302.41751 * 24 13 12 39 39 H 1.09002 * 109.86248 * 63.45144 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3704 -0.0011 13 7 6.0504 -3.7553 -0.0004 14 6 5.7018 -4.4353 1.2505 15 6 6.2139 -5.8847 1.2502 16 7 7.6475 -5.8452 1.0056 17 6 8.3832 -7.1064 1.0379 18 6 9.6027 -6.9087 0.1038 19 1 9.6045 -7.6640 -0.6821 20 8 10.8189 -6.9685 0.8517 21 6 9.4141 -5.4927 -0.5084 22 6 7.9005 -5.2728 -0.3442 23 1 7.3431 -5.8027 -1.1166 24 6 7.4962 -3.8052 -0.2918 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3632 -0.0007 27 1 5.9241 -1.8565 0.8889 28 1 5.9241 -1.8566 -0.8911 29 1 4.6179 -4.4389 1.3662 30 1 6.1492 -3.8975 2.0864 31 1 6.0162 -6.3471 2.2173 32 1 5.7195 -6.4515 0.4614 33 1 7.7547 -7.9170 0.6692 34 1 8.7180 -7.3225 2.0524 35 1 10.9893 -7.8296 1.2573 36 1 9.6971 -5.4828 -1.5610 37 1 9.9788 -4.7474 0.0517 38 1 7.6969 -3.3312 -1.2526 39 1 8.0506 -3.2958 0.4965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405673094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:05 Heat of formation + Delta-G solvation = -53.910265 kcal Electronic energy + Delta-G solvation = -21044.094065 eV Core-core repulsion = 17794.200839 eV Total energy + Delta-G solvation = -3249.893226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23733 -38.53353 -37.04051 -35.14174 -33.84342 -32.43682 -31.64976 -29.91774 -28.15740 -26.83951 -24.38978 -23.18340 -22.08355 -21.05488 -19.87022 -19.31523 -18.22410 -17.39720 -16.18645 -15.99905 -15.85530 -15.08982 -14.97488 -14.79782 -14.21902 -14.11286 -13.59850 -13.38796 -13.25058 -13.06025 -12.66238 -12.37985 -12.12773 -12.00536 -11.72808 -11.52410 -11.24721 -11.05633 -10.99645 -10.73073 -10.59632 -10.57242 -10.24589 -9.96135 -9.51818 -8.58134 -8.37911 -8.16249 -7.84885 -6.29701 -3.80919 3.04254 3.08387 3.16418 3.69900 3.76861 3.85225 4.06424 4.12045 4.34314 4.51702 4.77008 4.85483 5.02930 5.13036 5.21649 5.24093 5.34611 5.35969 5.50776 5.53828 5.57835 5.69545 5.74004 5.77531 5.82486 5.83563 5.95588 6.04351 6.22098 6.40289 6.79472 7.09296 7.26924 7.35486 7.41381 7.60766 8.16482 8.62271 8.97047 9.44433 9.85853 10.83514 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049347 B = 0.003703 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.271291 B = 7558.604002 C = 7904.362225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.592 5.592 10 C 0.453 3.547 11 O -0.560 6.560 12 C 0.047 3.953 13 N -0.526 5.526 14 C 0.061 3.939 15 C 0.066 3.934 16 N -0.539 5.539 17 C 0.022 3.978 18 C 0.097 3.903 19 H 0.063 0.937 20 O -0.560 6.560 21 C -0.106 4.106 22 C 0.069 3.931 23 H 0.067 0.933 24 C 0.072 3.928 25 H 0.273 0.727 26 H 0.370 0.630 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.376 0.624 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.033 -9.763 0.651 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.239 3.761 11 O -0.442 6.442 12 C -0.084 4.084 13 N -0.251 5.251 14 C -0.067 4.067 15 C -0.062 4.062 16 N -0.265 5.265 17 C -0.106 4.106 18 C 0.037 3.963 19 H 0.081 0.919 20 O -0.365 6.365 21 C -0.144 4.144 22 C -0.039 4.039 23 H 0.085 0.915 24 C -0.056 4.056 25 H 0.084 0.916 26 H 0.203 0.797 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.223 0.777 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.366 -9.702 0.511 21.666 hybrid contribution 0.476 0.689 0.280 0.883 sum 19.841 -9.013 0.791 21.807 Atomic orbital electron populations 1.69621 1.05650 1.27471 1.49534 1.25034 0.95483 0.97973 0.97690 0.86672 0.79779 0.84049 0.78894 1.19613 1.20225 1.19496 1.19424 0.79246 0.96601 1.47978 0.86295 1.42215 1.07514 1.06167 1.67209 1.19684 0.88145 0.84497 0.83777 1.90513 1.69424 1.30798 1.53489 1.21831 0.95348 0.89597 1.01639 1.61132 1.13028 1.14894 1.36009 1.22295 1.02999 0.92380 0.88977 1.22026 0.85765 0.97515 1.00869 1.62671 1.12339 1.23445 1.28092 1.23206 0.95386 0.91297 1.00746 1.22975 0.83380 0.97929 0.91979 0.91897 1.86560 1.40719 1.38361 1.70829 1.22360 0.95443 0.95902 1.00733 1.22564 0.94610 0.96223 0.90479 0.91514 1.22026 0.87950 0.94795 1.00794 0.91643 0.79715 0.93297 0.89217 0.87393 0.95250 0.90529 0.93791 0.94000 0.89961 0.77660 0.90310 0.89414 0.90330 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.44 27.74 -169.99 -4.71 14.73 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 7 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 N -0.59 -14.13 5.09 -10.96 -0.06 -14.18 16 10 C 0.45 10.31 7.50 -10.99 -0.08 10.23 16 11 O -0.56 -14.85 13.88 5.54 0.08 -14.77 16 12 C 0.05 0.81 5.47 -4.98 -0.03 0.78 16 13 N -0.53 -8.70 4.35 -235.73 -1.03 -9.72 16 14 C 0.06 1.02 5.26 -3.62 -0.02 1.00 16 15 C 0.07 0.93 6.04 -4.22 -0.03 0.90 16 16 N -0.54 -6.82 4.64 -225.21 -1.05 -7.87 16 17 C 0.02 0.22 6.69 -3.29 -0.02 0.20 16 18 C 0.10 0.88 4.39 -24.46 -0.11 0.77 16 19 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 20 O -0.56 -5.10 13.30 -35.23 -0.47 -5.56 16 21 C -0.11 -1.06 6.36 -25.02 -0.16 -1.22 16 22 C 0.07 0.84 2.75 -66.59 -0.18 0.65 16 23 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 24 C 0.07 0.95 5.24 -3.81 -0.02 0.93 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 27 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.09 1.33 8.01 -51.93 -0.42 0.92 16 29 H 0.11 2.14 5.84 -51.93 -0.30 1.83 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.08 0.78 7.99 -51.93 -0.41 0.37 16 35 H 0.38 1.74 9.12 45.56 0.42 2.15 16 36 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -33.33 310.72 -7.81 -41.15 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.14 Total: 10.12 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.89 Total: 6.53 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -1.35 Total: -56.87 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.39 Total: -20.34 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.33 -7.81 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405673094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.763 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds