Wall clock time and date at job start Mon Mar 30 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00052 * 3 2 1 5 5 H 1.48492 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46802 * 120.00355 * 3 2 1 7 7 C 1.38953 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00056 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.34767 * 120.00136 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99881 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00084 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47042 * 179.97438 * 12 10 9 14 14 C 1.46606 * 111.00140 * 293.94704 * 13 12 10 15 15 C 1.53703 * 110.96521 * 180.02562 * 14 13 12 16 16 N 1.45477 * 107.57844 * 304.05826 * 15 14 13 17 17 C 1.46162 * 117.91468 * 183.52597 * 16 15 14 18 18 C 1.54984 * 105.84922 * 207.65900 * 17 16 15 19 19 H 1.09001 * 110.35563 * 122.80377 * 18 17 16 20 20 O 1.42901 * 110.37252 * 245.08960 * 18 17 16 21 21 C 1.55409 * 104.92350 * 3.95318 * 18 17 16 22 22 C 1.48788 * 109.30851 * 63.26315 * 16 15 14 23 23 H 1.08998 * 111.10950 * 53.84041 * 22 16 15 24 24 C 1.47560 * 111.00559 * 60.10913 * 13 12 10 25 25 H 0.96999 * 119.99926 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99787 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47431 * 59.99547 * 12 10 9 28 28 H 1.08998 * 109.46901 * 299.99139 * 12 10 9 29 29 H 1.08999 * 109.17153 * 59.63953 * 14 13 12 30 30 H 1.09001 * 109.13742 * 300.38235 * 14 13 12 31 31 H 1.09004 * 109.83907 * 184.53613 * 15 14 13 32 32 H 1.09000 * 109.83954 * 63.57326 * 15 14 13 33 33 H 1.08996 * 110.18018 * 326.74984 * 17 16 15 34 34 H 1.09004 * 110.18121 * 88.49358 * 17 16 15 35 35 H 0.96697 * 114.00181 * 295.50835 * 20 18 17 36 36 H 1.09002 * 110.92845 * 264.08949 * 21 18 17 37 37 H 1.08999 * 110.92673 * 140.46878 * 21 18 17 38 38 H 1.09004 * 109.86186 * 57.57759 * 24 13 12 39 39 H 1.08995 * 109.86082 * 296.55111 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 2.9621 -6.0172 -1.2525 15 6 3.9602 -7.1861 -1.2524 16 7 4.8038 -7.0433 -0.0759 17 6 5.8932 -8.0009 0.1053 18 6 6.1293 -8.0890 1.6345 19 1 6.0212 -9.1184 1.9761 20 8 7.4254 -7.5875 1.9674 21 6 5.0257 -7.1928 2.2622 22 6 3.9658 -7.1623 1.1478 23 1 3.3841 -8.0840 1.1371 24 6 3.0639 -5.9359 1.1927 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 0.0002 27 1 0.6174 -4.9205 -0.8913 28 1 0.6169 -4.9209 0.8887 29 1 3.5074 -5.0805 -1.3673 30 1 2.2727 -6.1350 -2.0886 31 1 4.5726 -7.1497 -2.1534 32 1 3.4214 -8.1326 -1.2085 33 1 5.6057 -8.9762 -0.2874 34 1 6.7937 -7.6451 -0.3953 35 1 8.1542 -8.1077 1.6022 36 1 5.4059 -6.1917 2.4655 37 1 4.6247 -7.6464 3.1686 38 1 2.4520 -5.9590 2.0945 39 1 3.6696 -5.0298 1.1782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405673095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:07 Heat of formation + Delta-G solvation = -59.174537 kcal Electronic energy + Delta-G solvation = -21459.647331 eV Core-core repulsion = 18209.525829 eV Total energy + Delta-G solvation = -3250.121502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11119 -38.49818 -36.71310 -34.92125 -33.70506 -32.19390 -31.28971 -29.66556 -27.99301 -26.50697 -24.45541 -23.08162 -21.91209 -20.85558 -19.75405 -19.10466 -17.83241 -17.21966 -16.03353 -15.97395 -15.65443 -14.94883 -14.74489 -14.54232 -14.10162 -13.90218 -13.65101 -13.28848 -13.20800 -13.02965 -12.33570 -11.85225 -11.76207 -11.69637 -11.43312 -11.24698 -11.13018 -10.94257 -10.55668 -10.47340 -10.43058 -10.34984 -10.20897 -10.06868 -9.42188 -9.10346 -8.16126 -7.95353 -7.33774 -6.41832 -3.82832 3.19642 3.25783 3.30589 3.87554 3.95946 4.06339 4.18234 4.38627 4.53949 4.74281 5.00503 5.06033 5.21078 5.28966 5.31827 5.37478 5.53261 5.55284 5.63341 5.72088 5.81992 5.91902 5.94154 6.05987 6.08681 6.17361 6.24285 6.35128 6.65552 6.79138 7.07848 7.30874 7.46590 7.53100 7.54739 7.56357 8.05190 8.60587 9.17261 9.53600 10.05002 10.74801 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.004457 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.599330 B = 6281.290346 C = 6762.029843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.558 5.558 10 C 0.405 3.595 11 O -0.585 6.585 12 C 0.044 3.956 13 N -0.524 5.524 14 C 0.048 3.952 15 C 0.071 3.929 16 N -0.531 5.531 17 C 0.023 3.977 18 C 0.098 3.902 19 H 0.061 0.939 20 O -0.557 6.557 21 C -0.107 4.107 22 C 0.074 3.926 23 H 0.055 0.945 24 C 0.053 3.947 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.374 0.626 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 -16.381 0.901 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.194 5.194 10 C 0.190 3.810 11 O -0.471 6.471 12 C -0.088 4.088 13 N -0.247 5.247 14 C -0.080 4.080 15 C -0.058 4.058 16 N -0.257 5.257 17 C -0.106 4.106 18 C 0.038 3.962 19 H 0.079 0.921 20 O -0.362 6.362 21 C -0.146 4.146 22 C -0.034 4.034 23 H 0.073 0.927 24 C -0.075 4.075 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.221 0.779 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.963 -15.728 1.130 16.859 hybrid contribution 0.124 0.327 -0.481 0.595 sum 6.087 -15.401 0.649 16.573 Atomic orbital electron populations 1.69602 1.05952 1.28310 1.50278 1.25266 0.95601 0.99748 0.97182 0.85934 0.78793 0.80504 0.79098 1.19920 1.20952 1.19882 1.19670 0.93360 0.82425 1.47620 0.88038 1.42049 1.09248 1.04911 1.63201 1.21115 0.88957 0.85948 0.84939 1.90466 1.13688 1.86784 1.56189 1.21987 0.95292 0.88194 1.03323 1.62123 1.19020 1.40786 1.02780 1.22231 0.95095 0.99263 0.91402 1.21958 0.93759 0.97340 0.92699 1.62620 1.10404 1.49867 1.02769 1.23251 0.96402 0.94026 0.96903 1.22991 0.83967 0.96410 0.92826 0.92150 1.86604 1.14989 1.57130 1.77474 1.22364 0.93500 1.01701 0.96991 1.22553 0.93188 0.98277 0.89341 0.92682 1.22301 0.94789 0.98465 0.91910 0.91785 0.77452 0.89493 0.89346 0.90502 0.91541 0.90852 0.95002 0.94473 0.90052 0.77910 0.89045 0.90570 0.91563 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.09 5.29 -10.96 -0.06 -14.14 16 10 C 0.40 9.39 7.16 -10.99 -0.08 9.31 16 11 O -0.58 -15.31 11.33 5.54 0.06 -15.25 16 12 C 0.04 0.79 5.84 -4.97 -0.03 0.76 16 13 N -0.52 -9.00 4.80 -235.74 -1.13 -10.13 16 14 C 0.05 0.82 5.32 -3.62 -0.02 0.80 16 15 C 0.07 1.03 6.04 -4.23 -0.03 1.00 16 16 N -0.53 -8.07 4.65 -225.08 -1.05 -9.12 16 17 C 0.02 0.27 6.69 -3.18 -0.02 0.25 16 18 C 0.10 1.11 4.40 -24.40 -0.11 1.00 16 19 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 20 O -0.56 -6.56 13.30 -35.23 -0.47 -7.02 16 21 C -0.11 -1.42 6.36 -25.02 -0.16 -1.58 16 22 C 0.07 1.09 2.76 -66.59 -0.18 0.91 16 23 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 24 C 0.05 0.92 4.81 -3.82 -0.02 0.90 16 25 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 27 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.62 5.84 -51.93 -0.30 1.32 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.08 0.97 7.99 -51.93 -0.42 0.55 16 35 H 0.37 2.55 9.12 45.56 0.42 2.97 16 36 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.10 2.06 5.50 -51.93 -0.29 1.77 16 LS Contribution 308.92 15.07 4.66 4.66 Total: -1.00 -31.79 308.92 -8.23 -40.01 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.06 Total: 13.26 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.88 Total: 5.37 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -1.51 Total: -57.20 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.41 Total: -22.27 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.79 -8.23 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405673095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.164 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds