Wall clock time and date at job start Mon Mar 30 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00052 * 3 2 1 5 5 H 1.48492 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46802 * 120.00355 * 3 2 1 7 7 C 1.38953 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00056 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.34767 * 120.00136 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99881 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00084 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47042 * 179.97438 * 12 10 9 14 14 C 1.46606 * 111.00140 * 293.94704 * 13 12 10 15 15 C 1.53703 * 110.96521 * 180.02562 * 14 13 12 16 16 N 1.45477 * 107.57844 * 304.05826 * 15 14 13 17 17 C 1.46162 * 117.91468 * 183.52597 * 16 15 14 18 18 C 1.54984 * 105.84922 * 207.65900 * 17 16 15 19 19 H 1.09001 * 110.35563 * 122.80377 * 18 17 16 20 20 O 1.42901 * 110.37252 * 245.08960 * 18 17 16 21 21 C 1.55409 * 104.92350 * 3.95318 * 18 17 16 22 22 C 1.48788 * 109.30851 * 63.26315 * 16 15 14 23 23 H 1.08998 * 111.10950 * 53.84041 * 22 16 15 24 24 C 1.47560 * 111.00559 * 60.10913 * 13 12 10 25 25 H 0.96999 * 119.99926 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99787 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47431 * 59.99547 * 12 10 9 28 28 H 1.08998 * 109.46901 * 299.99139 * 12 10 9 29 29 H 1.08999 * 109.17153 * 59.63953 * 14 13 12 30 30 H 1.09001 * 109.13742 * 300.38235 * 14 13 12 31 31 H 1.09004 * 109.83907 * 184.53613 * 15 14 13 32 32 H 1.09000 * 109.83954 * 63.57326 * 15 14 13 33 33 H 1.08996 * 110.18018 * 326.74984 * 17 16 15 34 34 H 1.09004 * 110.18121 * 88.49358 * 17 16 15 35 35 H 0.96697 * 114.00181 * 295.50835 * 20 18 17 36 36 H 1.09002 * 110.92845 * 264.08949 * 21 18 17 37 37 H 1.08999 * 110.92673 * 140.46878 * 21 18 17 38 38 H 1.09004 * 109.86186 * 57.57759 * 24 13 12 39 39 H 1.08995 * 109.86082 * 296.55111 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 2.9621 -6.0172 -1.2525 15 6 3.9602 -7.1861 -1.2524 16 7 4.8038 -7.0433 -0.0759 17 6 5.8932 -8.0009 0.1053 18 6 6.1293 -8.0890 1.6345 19 1 6.0212 -9.1184 1.9761 20 8 7.4254 -7.5875 1.9674 21 6 5.0257 -7.1928 2.2622 22 6 3.9658 -7.1623 1.1478 23 1 3.3841 -8.0840 1.1371 24 6 3.0639 -5.9359 1.1927 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 0.0002 27 1 0.6174 -4.9205 -0.8913 28 1 0.6169 -4.9209 0.8887 29 1 3.5074 -5.0805 -1.3673 30 1 2.2727 -6.1350 -2.0886 31 1 4.5726 -7.1497 -2.1534 32 1 3.4214 -8.1326 -1.2085 33 1 5.6057 -8.9762 -0.2874 34 1 6.7937 -7.6451 -0.3953 35 1 8.1542 -8.1077 1.6022 36 1 5.4059 -6.1917 2.4655 37 1 4.6247 -7.6464 3.1686 38 1 2.4520 -5.9590 2.0945 39 1 3.6696 -5.0298 1.1782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405673095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:06 Heat of formation + Delta-G solvation = -87.467643 kcal Electronic energy + Delta-G solvation = -21460.874212 eV Core-core repulsion = 18209.525829 eV Total energy + Delta-G solvation = -3251.348383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37647 -40.08827 -37.92328 -36.33887 -35.53139 -33.37524 -33.28689 -30.92614 -29.17960 -28.02311 -26.21596 -24.37283 -23.16663 -21.87338 -21.13495 -20.79069 -19.81503 -18.19101 -17.72697 -17.13173 -16.87063 -16.55918 -16.19366 -15.98463 -15.71221 -15.39916 -15.24350 -14.73689 -14.33123 -14.27968 -13.59158 -13.44715 -13.14855 -13.08419 -12.91732 -12.74201 -12.47898 -12.45839 -12.16991 -12.13728 -11.92084 -11.64744 -11.48347 -11.36287 -10.93352 -10.90122 -9.98736 -9.24203 -8.96762 -8.46320 -5.96144 1.36706 1.38941 1.49782 2.02885 2.28424 2.85739 2.98620 3.19207 3.27000 3.34263 3.60786 3.71619 4.11877 4.15898 4.17497 4.27749 4.35968 4.43735 4.47193 4.53693 4.62996 4.64031 4.67295 4.75482 4.87342 4.89931 5.05515 5.15722 5.20405 5.34689 5.42537 5.85414 5.94935 6.04019 6.15425 6.37248 6.59550 6.93296 7.12053 7.55501 8.11908 8.68897 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.004457 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.599330 B = 6281.290346 C = 6762.029843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.074 0.926 9 N -0.571 5.571 10 C 0.406 3.594 11 O -0.616 6.616 12 C 0.052 3.948 13 N -0.510 5.510 14 C 0.047 3.953 15 C 0.078 3.922 16 N -0.564 5.564 17 C 0.024 3.976 18 C 0.104 3.896 19 H 0.095 0.905 20 O -0.580 6.580 21 C -0.110 4.110 22 C 0.081 3.919 23 H 0.075 0.925 24 C 0.053 3.947 25 H 0.278 0.722 26 H 0.396 0.604 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.395 0.605 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 -18.368 0.950 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.092 0.908 9 N -0.208 5.208 10 C 0.193 3.807 11 O -0.504 6.504 12 C -0.080 4.080 13 N -0.232 5.232 14 C -0.081 4.081 15 C -0.050 4.050 16 N -0.291 5.291 17 C -0.103 4.103 18 C 0.044 3.956 19 H 0.113 0.887 20 O -0.388 6.388 21 C -0.149 4.149 22 C -0.027 4.027 23 H 0.093 0.907 24 C -0.075 4.075 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.743 -17.746 1.172 18.689 hybrid contribution 0.248 0.898 -0.498 1.057 sum 5.991 -16.848 0.674 17.894 Atomic orbital electron populations 1.69658 1.06749 1.29349 1.50197 1.25991 0.96501 1.02278 0.96269 0.85043 0.77829 0.76965 0.78818 1.19895 1.19241 1.19901 1.19578 0.92511 0.84305 1.49936 0.90785 1.42115 1.09325 1.04926 1.64453 1.22190 0.88851 0.87166 0.82514 1.90480 1.15610 1.87583 1.56706 1.22097 0.95287 0.85126 1.05469 1.62242 1.18759 1.39290 1.02906 1.22254 0.95667 0.98341 0.91831 1.21883 0.93383 0.96729 0.93041 1.62548 1.11415 1.52052 1.03038 1.23305 0.95085 0.94349 0.97609 1.23014 0.83195 0.97329 0.92033 0.88726 1.86554 1.15959 1.58438 1.77897 1.22380 0.94182 1.00531 0.97806 1.22470 0.93095 0.97254 0.89837 0.90739 1.22224 0.94852 0.98010 0.92393 0.91259 0.77025 0.87159 0.87113 0.95309 0.89842 0.89949 0.92980 0.91998 0.90457 0.75483 0.92680 0.88228 0.90569 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.33 -19.27 9.68 84.04 0.81 -18.45 16 8 H 0.07 4.60 7.16 -2.91 -0.02 4.58 16 9 N -0.57 -29.66 5.29 -306.99 -1.62 -31.28 16 10 C 0.41 19.37 7.16 87.66 0.63 19.99 16 11 O -0.62 -33.97 11.33 -3.08 -0.03 -34.01 16 12 C 0.05 1.83 5.84 85.56 0.50 2.33 16 13 N -0.51 -17.01 4.80 -899.76 -4.32 -21.33 16 14 C 0.05 1.59 5.32 86.60 0.46 2.05 16 15 C 0.08 2.12 6.04 86.81 0.52 2.64 16 16 N -0.56 -16.50 4.65 -866.01 -4.03 -20.53 16 17 C 0.02 0.53 6.69 87.12 0.58 1.11 16 18 C 0.10 2.10 4.40 32.10 0.14 2.24 16 19 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 20 O -0.58 -12.72 13.30 -148.98 -1.98 -14.70 16 21 C -0.11 -2.80 6.36 31.70 0.20 -2.60 16 22 C 0.08 2.26 2.76 44.60 0.12 2.38 16 23 H 0.07 1.81 8.09 -2.39 -0.02 1.80 16 24 C 0.05 1.84 4.81 85.94 0.41 2.26 16 25 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 26 H 0.40 19.53 7.90 -92.71 -0.73 18.79 16 27 H 0.11 3.40 8.11 -2.39 -0.02 3.38 16 28 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 29 H 0.03 1.25 5.84 -2.39 -0.01 1.24 16 30 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 31 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.06 1.05 8.06 -2.39 -0.02 1.03 16 34 H 0.08 1.71 7.99 -2.39 -0.02 1.69 16 35 H 0.40 4.57 9.12 -74.06 -0.68 3.89 16 36 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.05 2.08 5.50 -2.39 -0.01 2.07 16 Total: -1.00 -71.43 308.92 -5.16 -76.58 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.34 Total: 35.40 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 4.85 Total: 13.85 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -9.69 Total: -122.99 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -2.02 Total: -48.71 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -71.43 -5.16 -76.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405673095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.883 kcal (2) G-P(sol) polarization free energy of solvation -71.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds