Wall clock time and date at job start Mon Mar 30 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48505 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46778 * 299.99903 * 3 2 1 6 6 H 1.48497 * 109.47228 * 59.99859 * 3 2 1 7 7 C 1.38946 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00294 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00311 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00349 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00277 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99898 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47248 * 173.72487 * 12 10 9 14 14 C 1.46975 * 110.99595 * 293.62933 * 13 12 10 15 15 C 1.53024 * 109.27759 * 176.67956 * 14 13 12 16 16 N 1.46977 * 109.46089 * 58.52750 * 15 14 13 17 17 C 1.47041 * 110.67614 * 177.38759 * 16 15 14 18 18 C 1.53072 * 109.35040 * 181.93099 * 17 16 15 19 19 O 1.43039 * 109.16729 * 303.02652 * 18 17 16 20 20 C 1.42981 * 113.65845 * 58.88570 * 19 18 17 21 21 C 1.47010 * 110.93668 * 300.85436 * 16 15 14 22 22 H 1.08995 * 109.54554 * 298.54266 * 21 16 15 23 23 C 1.46917 * 111.00271 * 169.93522 * 13 12 10 24 24 H 0.96996 * 119.99289 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99300 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.47164 * 293.72386 * 12 10 9 27 27 H 1.09000 * 109.47088 * 53.72616 * 12 10 9 28 28 H 1.09004 * 109.50465 * 296.61696 * 14 13 12 29 29 H 1.08998 * 109.50456 * 56.73984 * 14 13 12 30 30 H 1.08998 * 109.47654 * 178.52932 * 15 14 13 31 31 H 1.09002 * 109.46810 * 298.53186 * 15 14 13 32 32 H 1.09003 * 109.48715 * 301.88948 * 17 16 15 33 33 H 1.08993 * 109.49478 * 61.96293 * 17 16 15 34 34 H 1.08991 * 109.52333 * 62.93178 * 18 17 16 35 35 H 1.08997 * 109.52254 * 183.12186 * 18 17 16 36 36 H 1.08997 * 109.48870 * 61.23494 * 20 19 18 37 37 H 1.09001 * 109.48285 * 181.29311 * 20 19 18 38 38 H 1.09001 * 109.47539 * 303.21771 * 23 13 12 39 39 H 1.09008 * 109.47257 * 63.21298 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1911 -5.9754 -0.1504 14 6 2.8283 -5.9479 -1.4745 15 6 3.8648 -7.0704 -1.5599 16 7 3.2067 -8.3634 -1.3249 17 6 4.1678 -9.4677 -1.4623 18 6 3.4419 -10.8000 -1.2595 19 8 2.8035 -10.7970 0.0205 20 6 1.8573 -9.7381 0.1873 21 6 2.5622 -8.3924 -0.0039 22 1 3.3159 -8.2620 0.7725 23 6 1.5293 -7.2661 0.0834 24 1 -0.4849 0.8401 -0.0004 25 1 0.3534 -2.3906 0.0005 26 1 0.7044 -4.9706 0.9422 27 1 0.5352 -4.8737 -0.8271 28 1 2.0715 -6.0920 -2.2457 29 1 3.3203 -4.9864 -1.6217 30 1 4.3209 -7.0694 -2.5498 31 1 4.6348 -6.9120 -0.8048 32 1 4.6105 -9.4427 -2.4580 33 1 4.9519 -9.3629 -0.7125 34 1 2.6922 -10.9289 -2.0400 35 1 4.1614 -11.6175 -1.3057 36 1 1.0628 -9.8407 -0.5518 37 1 1.4308 -9.7861 1.1892 38 1 1.0738 -7.2668 1.0736 39 1 0.7582 -7.4210 -0.6713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408202618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:54 Heat of formation + Delta-G solvation = -86.360861 kcal Electronic energy + Delta-G solvation = -21166.156828 eV Core-core repulsion = 17914.856439 eV Total energy + Delta-G solvation = -3251.300390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29343 -40.13995 -38.37852 -36.12641 -35.62445 -33.29184 -33.12570 -31.51070 -29.16467 -26.93638 -26.68335 -24.88671 -24.17889 -22.03277 -20.97332 -20.88171 -19.86937 -17.88905 -17.54305 -17.19390 -16.77919 -16.61029 -16.21288 -16.03204 -15.78421 -15.63672 -15.43341 -15.09616 -14.91810 -14.67198 -13.98900 -13.49893 -13.20824 -13.06507 -12.90359 -12.74474 -12.67938 -12.41723 -12.40574 -12.21880 -12.11955 -11.73507 -11.51895 -11.40236 -10.68345 -10.27139 -10.00161 -9.51713 -9.25047 -8.46787 -5.95303 1.36200 1.41501 1.55563 2.05056 2.27574 2.61037 2.73637 2.95441 3.20113 3.36067 3.75026 3.82028 3.91788 4.08912 4.17398 4.23590 4.29380 4.30152 4.39252 4.45489 4.52596 4.56152 4.59442 4.69663 4.70553 4.80798 4.84656 4.88837 5.05457 5.08244 5.41064 5.77526 5.82399 5.95182 6.05837 6.13612 6.19033 6.60801 7.13216 7.56564 8.12498 8.70905 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052704 B = 0.003622 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.144015 B = 7728.377382 C = 8056.143882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.616 6.616 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.062 3.938 15 C 0.069 3.931 16 N -0.535 5.535 17 C 0.015 3.985 18 C 0.064 3.936 19 O -0.401 6.401 20 C 0.075 3.925 21 C 0.053 3.947 22 H 0.037 0.963 23 C 0.065 3.935 24 H 0.277 0.723 25 H 0.396 0.604 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.024 0.976 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 -19.248 -3.055 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.502 6.502 12 C -0.071 4.071 13 N -0.262 5.262 14 C -0.066 4.066 15 C -0.059 4.059 16 N -0.262 5.262 17 C -0.113 4.113 18 C -0.013 4.013 19 O -0.320 6.320 20 C -0.002 4.002 21 C -0.056 4.056 22 H 0.055 0.945 23 C -0.062 4.062 24 H 0.087 0.913 25 H 0.230 0.770 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.042 0.958 32 H 0.121 0.879 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.306 -19.241 -2.915 19.504 hybrid contribution -0.017 1.498 -0.127 1.504 sum 1.289 -17.743 -3.042 18.048 Atomic orbital electron populations 1.69678 1.06803 1.29204 1.50471 1.26022 0.96537 1.02351 0.96336 0.84882 0.78004 0.77175 0.78333 1.19876 1.19577 1.19606 1.19680 0.92640 0.83999 1.49780 0.90413 1.41938 1.09304 1.04667 1.65226 1.20752 0.88288 0.85900 0.82216 1.90475 1.15746 1.87811 1.56129 1.21719 0.93269 0.88379 1.03748 1.61680 1.31578 1.02133 1.30801 1.22112 0.96936 0.98816 0.88780 1.22030 0.94854 0.87731 1.01254 1.62510 1.31355 1.03086 1.29207 1.22889 0.93950 0.91655 1.02782 1.22824 0.97012 0.96306 0.85127 1.87970 1.57818 1.50397 1.35777 1.22704 0.90568 0.83306 1.03651 1.22340 0.96818 0.96455 0.90028 0.94489 1.22173 0.94916 0.86599 1.02553 0.91313 0.77017 0.86859 0.91483 0.94183 0.91795 0.88696 0.95765 0.87920 0.94982 0.91500 0.86316 0.91289 0.86627 0.88393 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.60 5.29 -307.00 -1.62 -31.23 16 10 C 0.44 21.21 7.34 87.66 0.64 21.85 16 11 O -0.62 -34.41 14.26 -3.05 -0.04 -34.46 16 12 C 0.06 2.10 5.45 85.56 0.47 2.57 16 13 N -0.54 -17.99 4.41 -900.33 -3.97 -21.96 16 14 C 0.06 2.07 5.27 86.30 0.45 2.53 16 15 C 0.07 1.96 5.60 86.30 0.48 2.45 16 16 N -0.54 -12.93 4.70 -869.60 -4.09 -17.02 16 17 C 0.02 0.29 5.64 86.30 0.49 0.78 16 18 C 0.06 1.05 7.01 72.01 0.50 1.55 16 19 O -0.40 -8.44 10.83 -148.98 -1.61 -10.06 16 20 C 0.08 1.42 6.27 72.02 0.45 1.87 16 21 C 0.05 1.27 2.49 44.95 0.11 1.38 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 C 0.07 1.62 4.86 86.32 0.42 2.04 16 24 H 0.28 13.99 8.31 -92.71 -0.77 13.21 16 25 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 26 H 0.11 3.45 8.02 -2.39 -0.02 3.43 16 27 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 2.65 6.09 -2.39 -0.01 2.64 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 2.08 8.07 -2.39 -0.02 2.06 16 39 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -68.53 311.73 -3.41 -71.94 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.31 Total: 28.40 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 5.30 Total: 18.68 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -9.40 Total: -119.66 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.66 Total: -44.51 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.53 -3.41 -71.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408202618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.418 kcal (2) G-P(sol) polarization free energy of solvation -68.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds