Wall clock time and date at job start Mon Mar 30 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86806 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47017 * 239.99829 * 3 2 1 5 5 H 1.48494 * 109.47279 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46823 * 119.99995 * 3 2 1 7 7 C 1.38949 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00574 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99604 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99744 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99906 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99560 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.46532 * 179.97438 * 12 10 9 14 14 C 1.46974 * 110.99949 * 66.30970 * 13 12 10 15 15 C 1.53022 * 109.29774 * 183.28948 * 14 13 12 16 16 N 1.46998 * 109.46196 * 301.49631 * 15 14 13 17 17 C 1.47166 * 110.63927 * 182.60947 * 16 15 14 18 18 C 1.53070 * 109.29833 * 178.19891 * 17 16 15 19 19 O 1.43032 * 109.22672 * 56.94132 * 18 17 16 20 20 C 1.42991 * 113.63546 * 301.06473 * 19 18 17 21 21 C 1.47002 * 110.90889 * 59.14408 * 16 15 14 22 22 H 1.08997 * 109.73301 * 61.25241 * 21 16 15 23 23 C 1.46932 * 110.99537 * 189.99602 * 13 12 10 24 24 H 0.97003 * 119.99918 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00121 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47121 * 59.99945 * 12 10 9 27 27 H 1.09001 * 109.47026 * 299.98954 * 12 10 9 28 28 H 1.09000 * 109.49965 * 303.23239 * 14 13 12 29 29 H 1.08999 * 109.49925 * 63.30480 * 14 13 12 30 30 H 1.08995 * 109.47053 * 61.49212 * 15 14 13 31 31 H 1.08994 * 109.46996 * 181.50090 * 15 14 13 32 32 H 1.09003 * 109.56859 * 58.22306 * 17 16 15 33 33 H 1.08999 * 109.47673 * 298.11945 * 17 16 15 34 34 H 1.09002 * 109.52267 * 297.00065 * 18 17 16 35 35 H 1.09004 * 109.51735 * 176.87998 * 18 17 16 36 36 H 1.08991 * 109.48988 * 178.72657 * 20 19 18 37 37 H 1.08998 * 109.48548 * 298.77069 * 20 19 18 38 38 H 1.09012 * 109.47181 * 56.79127 * 23 13 12 39 39 H 1.08994 * 109.48028 * 296.78014 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 2.9598 -6.0221 1.2549 15 6 3.9964 -7.1452 1.1802 16 7 3.3151 -8.4253 0.9396 17 6 4.2833 -9.5335 0.9249 18 6 3.5376 -10.8541 0.7174 19 8 2.7811 -10.7824 -0.4943 20 6 1.8253 -9.7190 -0.5114 21 6 2.5477 -8.3837 -0.3136 22 1 3.2213 -8.2061 -1.1519 23 6 1.5138 -7.2574 -0.2403 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6175 -4.9204 -0.8913 27 1 0.6169 -4.9209 0.8887 28 1 3.4664 -5.0688 1.4058 29 1 2.2798 -6.2084 2.0861 30 1 4.6914 -6.9445 0.3649 31 1 4.5447 -7.1966 2.1208 32 1 4.8185 -9.5633 1.8741 33 1 4.9933 -9.3851 0.1113 34 1 2.8648 -11.0283 1.5571 35 1 4.2559 -11.6713 0.6505 36 1 1.3053 -9.7128 -1.4692 37 1 1.1043 -9.8653 0.2929 38 1 0.9655 -7.2058 -1.1810 39 1 0.8184 -7.4551 0.5753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408202622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:57 Heat of formation + Delta-G solvation = -60.208393 kcal Electronic energy + Delta-G solvation = -21162.800852 eV Core-core repulsion = 17912.634518 eV Total energy + Delta-G solvation = -3250.166333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22845 -38.50777 -37.10254 -34.76712 -33.82729 -32.10657 -31.27026 -30.38178 -27.77981 -25.84459 -25.05944 -23.49224 -23.14364 -20.96639 -19.78573 -19.16384 -17.85525 -16.58261 -16.48023 -15.94446 -15.69695 -15.11293 -14.78016 -14.65110 -14.57389 -14.39267 -14.13929 -13.58442 -13.51475 -13.32112 -12.38660 -12.23458 -11.86934 -11.65448 -11.58322 -11.44397 -11.29254 -11.18912 -10.98586 -10.65065 -10.50766 -10.43932 -10.21435 -9.75434 -9.46206 -8.51643 -8.39816 -7.98052 -7.85092 -6.41629 -3.82502 3.19964 3.25721 3.29937 3.59211 3.74884 3.90070 3.96592 4.23230 4.72086 4.78522 4.84316 4.98282 5.03135 5.09876 5.21574 5.25186 5.33572 5.44293 5.50283 5.51866 5.61424 5.63702 5.66184 5.74813 5.85441 5.91856 5.99456 6.20188 6.28251 6.39963 6.85286 6.88485 6.96100 7.29254 7.38533 7.55011 8.06272 8.61936 9.18028 9.54512 10.06355 10.76056 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052822 B = 0.003618 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.951798 B = 7737.300982 C = 8082.884721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.047 3.953 13 N -0.516 5.516 14 C 0.055 3.945 15 C 0.061 3.939 16 N -0.535 5.535 17 C 0.016 3.984 18 C 0.064 3.936 19 O -0.385 6.385 20 C 0.070 3.930 21 C 0.052 3.948 22 H 0.060 0.940 23 C 0.063 3.937 24 H 0.272 0.728 25 H 0.392 0.608 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.031 0.969 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 -18.008 1.993 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.084 4.084 13 N -0.241 5.241 14 C -0.073 4.073 15 C -0.067 4.067 16 N -0.261 5.261 17 C -0.112 4.112 18 C -0.013 4.013 19 O -0.303 6.303 20 C -0.008 4.008 21 C -0.057 4.057 22 H 0.078 0.922 23 C -0.066 4.066 24 H 0.082 0.918 25 H 0.225 0.775 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.378 -17.958 1.842 18.208 hybrid contribution -0.278 1.132 0.225 1.187 sum 2.101 -16.826 2.067 17.083 Atomic orbital electron populations 1.69603 1.05939 1.28262 1.50545 1.25256 0.95623 0.99702 0.97314 0.85922 0.78765 0.80485 0.79067 1.19888 1.20988 1.19926 1.19648 0.93328 0.82227 1.47707 0.87975 1.41861 1.09189 1.04566 1.64398 1.19730 0.88394 0.84533 0.84417 1.90476 1.13720 1.86892 1.55202 1.21840 0.93891 0.91103 1.01594 1.61741 1.25393 1.01313 1.35613 1.22337 0.95711 0.99997 0.89235 1.22170 0.95972 0.87542 1.00988 1.62522 1.25623 1.04096 1.33874 1.22791 0.94537 0.91924 1.01932 1.22657 0.94785 0.96448 0.87438 1.87985 1.52836 1.51347 1.38170 1.22668 0.90618 0.84934 1.02545 1.22307 0.96367 0.95291 0.91726 0.92190 1.22093 0.94709 0.88666 1.01130 0.91819 0.77481 0.89312 0.93346 0.87344 0.95044 0.93572 0.90411 0.89676 0.93888 0.92359 0.88595 0.88288 0.92319 0.90171 0.94177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.44 10.45 7.48 -10.98 -0.08 10.37 16 11 O -0.58 -15.47 13.93 5.55 0.08 -15.39 16 12 C 0.05 0.85 5.45 -4.97 -0.03 0.82 16 13 N -0.52 -8.82 4.45 -235.92 -1.05 -9.87 16 14 C 0.06 0.92 5.26 -3.77 -0.02 0.90 16 15 C 0.06 0.87 5.59 -3.76 -0.02 0.85 16 16 N -0.53 -6.88 4.71 -226.10 -1.06 -7.95 16 17 C 0.02 0.17 5.65 -3.64 -0.02 0.15 16 18 C 0.06 0.61 7.00 37.19 0.26 0.87 16 19 O -0.39 -4.53 10.83 -35.23 -0.38 -4.92 16 20 C 0.07 0.75 6.27 37.21 0.23 0.99 16 21 C 0.05 0.67 2.48 -67.57 -0.17 0.50 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.06 0.85 4.87 -3.77 -0.02 0.83 16 24 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 26 H 0.09 1.44 8.02 -51.93 -0.42 1.02 16 27 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 28 H 0.11 2.16 5.86 -51.93 -0.30 1.86 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.96 8.07 -51.92 -0.42 0.54 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -31.15 311.35 -8.23 -39.38 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.04 Total: 7.83 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.10 Total: 8.31 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -1.45 Total: -55.91 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.30 Total: -20.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.15 -8.23 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408202622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.825 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds