Wall clock time and date at job start Mon Mar 30 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86806 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47017 * 239.99829 * 3 2 1 5 5 H 1.48494 * 109.47279 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46823 * 119.99995 * 3 2 1 7 7 C 1.38949 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00574 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99604 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99744 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99906 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99560 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.46532 * 179.97438 * 12 10 9 14 14 C 1.46974 * 110.99949 * 66.30970 * 13 12 10 15 15 C 1.53022 * 109.29774 * 183.28948 * 14 13 12 16 16 N 1.46998 * 109.46196 * 301.49631 * 15 14 13 17 17 C 1.47166 * 110.63927 * 182.60947 * 16 15 14 18 18 C 1.53070 * 109.29833 * 178.19891 * 17 16 15 19 19 O 1.43032 * 109.22672 * 56.94132 * 18 17 16 20 20 C 1.42991 * 113.63546 * 301.06473 * 19 18 17 21 21 C 1.47002 * 110.90889 * 59.14408 * 16 15 14 22 22 H 1.08997 * 109.73301 * 61.25241 * 21 16 15 23 23 C 1.46932 * 110.99537 * 189.99602 * 13 12 10 24 24 H 0.97003 * 119.99918 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00121 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47121 * 59.99945 * 12 10 9 27 27 H 1.09001 * 109.47026 * 299.98954 * 12 10 9 28 28 H 1.09000 * 109.49965 * 303.23239 * 14 13 12 29 29 H 1.08999 * 109.49925 * 63.30480 * 14 13 12 30 30 H 1.08995 * 109.47053 * 61.49212 * 15 14 13 31 31 H 1.08994 * 109.46996 * 181.50090 * 15 14 13 32 32 H 1.09003 * 109.56859 * 58.22306 * 17 16 15 33 33 H 1.08999 * 109.47673 * 298.11945 * 17 16 15 34 34 H 1.09002 * 109.52267 * 297.00065 * 18 17 16 35 35 H 1.09004 * 109.51735 * 176.87998 * 18 17 16 36 36 H 1.08991 * 109.48988 * 178.72657 * 20 19 18 37 37 H 1.08998 * 109.48548 * 298.77069 * 20 19 18 38 38 H 1.09012 * 109.47181 * 56.79127 * 23 13 12 39 39 H 1.08994 * 109.48028 * 296.78014 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 2.9598 -6.0221 1.2549 15 6 3.9964 -7.1452 1.1802 16 7 3.3151 -8.4253 0.9396 17 6 4.2833 -9.5335 0.9249 18 6 3.5376 -10.8541 0.7174 19 8 2.7811 -10.7824 -0.4943 20 6 1.8253 -9.7190 -0.5114 21 6 2.5477 -8.3837 -0.3136 22 1 3.2213 -8.2061 -1.1519 23 6 1.5138 -7.2574 -0.2403 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6175 -4.9204 -0.8913 27 1 0.6169 -4.9209 0.8887 28 1 3.4664 -5.0688 1.4058 29 1 2.2798 -6.2084 2.0861 30 1 4.6914 -6.9445 0.3649 31 1 4.5447 -7.1966 2.1208 32 1 4.8185 -9.5633 1.8741 33 1 4.9933 -9.3851 0.1113 34 1 2.8648 -11.0283 1.5571 35 1 4.2559 -11.6713 0.6505 36 1 1.3053 -9.7128 -1.4692 37 1 1.1043 -9.8653 0.2929 38 1 0.9655 -7.2058 -1.1810 39 1 0.8184 -7.4551 0.5753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408202622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:56 Heat of formation + Delta-G solvation = -85.801818 kcal Electronic energy + Delta-G solvation = -21163.910666 eV Core-core repulsion = 17912.634518 eV Total energy + Delta-G solvation = -3251.276148 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28775 -40.14087 -38.37081 -36.12690 -35.61222 -33.29151 -33.12437 -31.50221 -29.16328 -26.92150 -26.68640 -24.87797 -24.17285 -22.02298 -20.98316 -20.88255 -19.86490 -17.88992 -17.53627 -17.17500 -16.77076 -16.61990 -16.20036 -16.04128 -15.77095 -15.63630 -15.44855 -15.07377 -14.94890 -14.66492 -13.97571 -13.48641 -13.20551 -13.05548 -12.89293 -12.73318 -12.67580 -12.43716 -12.40219 -12.21542 -12.12618 -11.73126 -11.51492 -11.39401 -10.69149 -10.24628 -10.00192 -9.51611 -9.24389 -8.46307 -5.95005 1.39565 1.41428 1.52276 2.05182 2.27754 2.61595 2.74007 2.95490 3.20423 3.36551 3.75670 3.82199 3.92264 4.09010 4.17927 4.24335 4.29703 4.30381 4.39649 4.46628 4.51897 4.56491 4.59830 4.69665 4.70603 4.81297 4.84621 4.90953 5.07526 5.08686 5.40761 5.77927 5.82927 5.95125 6.05934 6.14262 6.19464 6.60990 7.13070 7.56576 8.12478 8.70903 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052822 B = 0.003618 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.951798 B = 7737.300982 C = 8082.884721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.441 3.559 11 O -0.615 6.615 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.059 3.941 15 C 0.069 3.931 16 N -0.535 5.535 17 C 0.015 3.985 18 C 0.064 3.936 19 O -0.401 6.401 20 C 0.075 3.925 21 C 0.053 3.947 22 H 0.037 0.963 23 C 0.065 3.935 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.024 0.976 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -19.315 2.248 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.228 3.772 11 O -0.501 6.501 12 C -0.071 4.071 13 N -0.262 5.262 14 C -0.069 4.069 15 C -0.059 4.059 16 N -0.261 5.261 17 C -0.113 4.113 18 C -0.013 4.013 19 O -0.319 6.319 20 C -0.002 4.002 21 C -0.056 4.056 22 H 0.055 0.945 23 C -0.063 4.063 24 H 0.087 0.913 25 H 0.230 0.770 26 H 0.131 0.869 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.572 -19.295 2.097 19.473 hybrid contribution 0.001 1.472 0.152 1.479 sum 1.573 -17.824 2.249 18.034 Atomic orbital electron populations 1.69664 1.06818 1.29352 1.50319 1.26022 0.96530 1.02355 0.96286 0.85003 0.77775 0.76718 0.78928 1.19778 1.19473 1.19696 1.19620 0.92681 0.84012 1.49992 0.90346 1.41920 1.09299 1.04644 1.65186 1.20749 0.88291 0.85907 0.82213 1.90457 1.15722 1.87752 1.56217 1.21711 0.93499 0.88352 1.03570 1.61698 1.26022 1.02648 1.35848 1.22168 0.96121 0.99007 0.89571 1.22035 0.94952 0.87839 1.01045 1.62566 1.25997 1.03739 1.33838 1.22912 0.94192 0.91658 1.02525 1.22821 0.95146 0.96302 0.87023 1.87973 1.53224 1.51423 1.39328 1.22702 0.90307 0.83316 1.03910 1.22330 0.96012 0.96433 0.90869 0.94491 1.22181 0.94892 0.86819 1.02399 0.91290 0.77009 0.86937 0.91422 0.91255 0.94369 0.95776 0.88740 0.87899 0.94969 0.91515 0.86323 0.86636 0.91303 0.88407 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.55 5.29 -306.98 -1.62 -31.17 16 10 C 0.44 21.16 7.48 87.66 0.66 21.82 16 11 O -0.62 -34.17 13.93 -3.05 -0.04 -34.21 16 12 C 0.06 2.09 5.45 85.56 0.47 2.56 16 13 N -0.54 -18.02 4.45 -900.30 -4.00 -22.02 16 14 C 0.06 2.00 5.26 86.30 0.45 2.46 16 15 C 0.07 1.97 5.59 86.29 0.48 2.45 16 16 N -0.54 -12.97 4.71 -869.25 -4.09 -17.06 16 17 C 0.01 0.29 5.65 86.28 0.49 0.78 16 18 C 0.06 1.05 7.00 72.01 0.50 1.55 16 19 O -0.40 -8.47 10.83 -148.98 -1.61 -10.08 16 20 C 0.08 1.42 6.27 72.02 0.45 1.87 16 21 C 0.05 1.27 2.48 44.95 0.11 1.39 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 C 0.06 1.61 4.87 86.32 0.42 2.03 16 24 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 25 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 26 H 0.11 3.42 8.02 -2.39 -0.02 3.40 16 27 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 28 H 0.07 2.89 5.86 -2.39 -0.01 2.88 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 2.08 8.07 -2.38 -0.02 2.06 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -68.11 311.35 -3.44 -71.55 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.31 Total: 28.88 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 5.31 Total: 18.52 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -9.44 Total: -119.76 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.66 Total: -44.29 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -68.11 -3.44 -71.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408202622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.247 kcal (2) G-P(sol) polarization free energy of solvation -68.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds