Wall clock time and date at job start Mon Mar 30 2020 04:35:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47533 * 2 1
4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3
5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1
6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1
7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4
10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4
11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4
12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3
13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1
14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2
15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2
16 16 H 1.09000 * 110.53554 * 304.30465 * 15 13 12
17 17 O 1.45090 * 110.60474 * 181.45696 * 15 13 12
18 18 C 1.45048 * 109.41633 * 266.14665 * 17 15 13
19 19 C 1.52048 * 106.04644 * 3.40136 * 18 17 15
20 20 H 1.08998 * 109.88567 * 86.83614 * 19 18 17
21 21 C 1.51240 * 119.10152 * 214.80093 * 19 18 17
22 22 O 1.43982 * 106.42497 * 176.90177 * 21 19 18
23 23 C 1.42308 * 117.07324 * 302.65035 * 22 21 19
24 24 C 1.53073 * 112.28377 * 52.87768 * 23 22 21
25 25 C 1.51557 * 106.98337 * 306.24312 * 24 23 22
26 26 H 1.09001 * 111.21317 * 301.72614 * 25 24 23
27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3
28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3
30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4
31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1
32 32 H 1.09004 * 110.11475 * 244.25906 * 18 17 15
33 33 H 1.09001 * 110.12856 * 122.55721 * 18 17 15
34 34 H 1.09005 * 110.06143 * 296.12428 * 21 19 18
35 35 H 1.08998 * 110.06088 * 57.67624 * 21 19 18
36 36 H 1.09000 * 108.93763 * 173.78917 * 23 22 21
37 37 H 1.08998 * 108.93774 * 292.48553 * 23 22 21
38 38 H 1.08999 * 110.12244 * 186.66832 * 24 23 22
39 39 H 1.09005 * 109.49225 * 65.46682 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7103 -1.2306
5 1 2.6533 -1.5884 -1.1315
6 6 1.6992 -0.2392 -2.4828
7 7 0.9434 0.8302 -2.6034
8 14 2.3213 -1.1201 -4.0080
9 1 1.8258 -2.5200 -4.0078
10 1 1.8268 -0.4196 -5.2205
11 1 3.8063 -1.1207 -4.0083
12 7 2.0184 -0.6906 1.1961
13 6 2.1471 -0.0184 2.3570
14 8 1.8590 1.1585 2.4115
15 6 2.6490 -0.7289 3.5877
16 1 2.0315 -1.6006 3.8045
17 8 2.6752 0.1736 4.7234
18 6 3.9949 0.7643 4.8394
19 6 4.7923 0.2481 3.6522
20 1 4.6320 0.8939 2.7889
21 6 6.2699 -0.0263 3.8219
22 8 6.7301 -0.5669 2.5693
23 6 6.0828 -1.7418 2.0941
24 6 4.5612 -1.5839 2.0382
25 6 4.1118 -1.1359 3.4145
26 1 4.4075 -1.8542 4.1792
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5139 -0.8900
30 1 0.7093 1.1619 -3.4844
31 1 2.2491 -1.6318 1.1525
32 1 4.4649 0.4516 5.7719
33 1 3.9241 1.8513 4.8001
34 1 6.7989 0.9001 4.0461
35 1 6.4263 -0.7503 4.6215
36 1 6.4538 -1.9706 1.0951
37 1 6.3229 -2.5715 2.7589
38 1 4.0946 -2.5357 1.7843
39 1 4.3009 -0.8291 1.2961
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408219397.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:35:51
Heat of formation + Delta-G solvation = -124.763725 kcal
Electronic energy + Delta-G solvation = -22142.874942 eV
Core-core repulsion = 18857.616528 eV
Total energy + Delta-G solvation = -3285.258414 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.04145 -38.47511 -37.30032 -34.78249 -33.44293 -32.28453 -31.75873 -29.51946
-28.05616 -25.70239 -25.26266 -23.64117 -22.38392 -20.87217 -20.41754 -19.43597
-17.35172 -16.55927 -16.11398 -15.88855 -15.83641 -15.28479 -15.07109 -14.87788
-14.20642 -13.91582 -13.87470 -13.42872 -12.98762 -12.93658 -12.40773 -12.19986
-11.77912 -11.38748 -11.29978 -11.19556 -11.08830 -10.95098 -10.73858 -10.69737
-10.35266 -10.26689 -10.24974 -10.03970 -9.67957 -9.07481 -8.72115 -8.53757
-7.90966 -6.13758 -4.23665 3.23445 3.25575 3.29457 3.29981 3.62002
3.73682 4.04138 4.12303 4.35045 4.54348 4.66252 4.99081 5.11664
5.14069 5.18503 5.20209 5.33461 5.37311 5.45773 5.56569 5.59099
5.69187 5.73124 5.77055 5.96705 6.11609 6.33591 6.74790 6.82246
6.96055 7.14205 7.17668 7.43670 7.54253 7.67120 7.89613 8.13420
8.62637 8.76073 9.09542 9.44058 10.92142
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.021176 B = 0.006395 C = 0.005303
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1321.955431 B = 4377.397391 C = 5278.406616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.265 3.735
3 H 0.047 0.953
4 C -0.534 4.534
5 H 0.061 0.939
6 C 0.067 3.933
7 N -0.883 5.883
8 Si 0.901 3.099
9 H -0.276 1.276
10 H -0.286 1.286
11 H -0.276 1.276
12 N -0.706 5.706
13 C 0.488 3.512
14 O -0.539 6.539
15 C 0.069 3.931
16 H 0.116 0.884
17 O -0.356 6.356
18 C 0.068 3.932
19 C -0.171 4.171
20 H 0.099 0.901
21 C 0.086 3.914
22 O -0.387 6.387
23 C 0.070 3.930
24 C -0.157 4.157
25 C -0.119 4.119
26 H 0.094 0.906
27 H 0.014 0.986
28 H 0.026 0.974
29 H 0.090 0.910
30 H 0.265 0.735
31 H 0.388 0.612
32 H 0.069 0.931
33 H 0.078 0.922
34 H 0.098 0.902
35 H 0.055 0.945
36 H 0.098 0.902
37 H 0.043 0.957
38 H 0.083 0.917
39 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.870 -6.533 11.935 16.242
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.164 3.836
3 H 0.065 0.935
4 C -0.573 4.573
5 H 0.079 0.921
6 C -0.136 4.136
7 N -0.520 5.520
8 Si 0.728 3.272
9 H -0.202 1.202
10 H -0.211 1.211
11 H -0.201 1.201
12 N -0.357 5.357
13 C 0.271 3.729
14 O -0.416 6.416
15 C 0.008 3.992
16 H 0.134 0.866
17 O -0.274 6.274
18 C -0.009 4.009
19 C -0.190 4.190
20 H 0.117 0.883
21 C 0.009 3.991
22 O -0.305 6.305
23 C -0.007 4.007
24 C -0.194 4.194
25 C -0.138 4.138
26 H 0.112 0.888
27 H 0.033 0.967
28 H 0.045 0.955
29 H 0.108 0.892
30 H 0.075 0.925
31 H 0.221 0.779
32 H 0.087 0.913
33 H 0.096 0.904
34 H 0.116 0.884
35 H 0.073 0.927
36 H 0.116 0.884
37 H 0.061 0.939
38 H 0.102 0.898
39 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 8.536 -5.408 11.844 15.569
hybrid contribution 0.181 -1.104 -0.892 1.431
sum 8.718 -6.511 10.952 15.438
Atomic orbital electron populations
1.22086 0.98531 0.99110 1.00929 1.18730 0.91008 0.93951 0.79916
0.93469 1.21152 1.32599 1.13232 0.90277 0.92128 1.24881 0.94778
0.94925 0.99037 1.69889 1.35724 1.22370 1.24019 0.86526 0.79182
0.79588 0.81907 1.20166 1.21125 1.20147 1.46659 1.65131 1.13505
1.10395 1.20711 0.79213 0.88042 0.84902 1.90667 1.50287 1.15897
1.84774 1.22610 0.96698 0.92635 0.87241 0.86595 1.89098 1.31242
1.61241 1.45823 1.22643 0.82981 0.98617 0.96657 1.23126 0.97111
0.97510 1.01260 0.88290 1.22175 0.92059 0.98720 0.86121 1.87791
1.60036 1.44309 1.38414 1.22368 0.91865 0.86538 0.99899 1.22152
0.96612 1.04102 0.96556 1.22551 0.94009 0.97649 0.99598 0.88774
0.96652 0.95468 0.89157 0.92488 0.77931 0.91296 0.90398 0.88385
0.92655 0.88408 0.93866 0.89800 0.88259
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16
2 C 0.27 6.68 2.56 -69.08 -0.18 6.50 16
3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16
4 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16
5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16
6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16
7 N -0.88 -24.78 11.32 55.43 0.63 -24.15 16
8 Si 0.90 20.38 29.54 -169.99 -5.02 15.35 16
9 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16
10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16
11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
12 N -0.71 -14.31 3.62 -54.93 -0.20 -14.51 16
13 C 0.49 9.84 5.85 -10.99 -0.06 9.78 16
14 O -0.54 -13.39 16.23 -13.42 -0.22 -13.61 16
15 C 0.07 1.07 3.97 -27.97 -0.11 0.96 16
16 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16
17 O -0.36 -5.90 10.80 -54.21 -0.59 -6.48 16
18 C 0.07 0.89 7.54 36.67 0.28 1.17 16
19 C -0.17 -2.27 2.21 -90.36 -0.20 -2.47 16
20 H 0.10 1.67 7.53 -51.93 -0.39 1.27 16
21 C 0.09 0.94 6.77 36.27 0.25 1.18 16
22 O -0.39 -5.16 10.63 -35.23 -0.37 -5.54 16
23 C 0.07 0.81 6.81 37.20 0.25 1.06 16
24 C -0.16 -1.99 4.20 -27.42 -0.12 -2.10 16
25 C -0.12 -1.49 2.45 -89.81 -0.22 -1.71 16
26 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16
27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16
29 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16
30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16
31 H 0.39 6.69 7.00 -40.82 -0.29 6.40 16
32 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16
33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
35 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16
36 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16
37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.08 0.90 7.72 -51.93 -0.40 0.50 16
39 H 0.10 1.63 6.32 -51.93 -0.33 1.31 16
LS Contribution 308.60 15.07 4.65 4.65
Total: -1.00 -31.75 308.60 -7.16 -38.90
By element:
Atomic # 1 Polarization: 12.66 SS G_CDS: -5.87 Total: 6.79 kcal
Atomic # 6 Polarization: -1.24 SS G_CDS: -0.16 Total: -1.40 kcal
Atomic # 7 Polarization: -39.09 SS G_CDS: 0.43 Total: -38.66 kcal
Atomic # 8 Polarization: -24.45 SS G_CDS: -1.18 Total: -25.63 kcal
Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -31.75 -7.16 -38.90 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408219397.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.859 kcal
(2) G-P(sol) polarization free energy of solvation -31.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.764 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds