Wall clock time and date at job start Mon Mar 30 2020 04:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.53554 * 304.30465 * 15 13 12 17 17 O 1.45090 * 110.60474 * 181.45696 * 15 13 12 18 18 C 1.45048 * 109.41633 * 266.14665 * 17 15 13 19 19 C 1.52048 * 106.04644 * 3.40136 * 18 17 15 20 20 H 1.08998 * 109.88567 * 86.83614 * 19 18 17 21 21 C 1.51240 * 119.10152 * 214.80093 * 19 18 17 22 22 O 1.43982 * 106.42497 * 176.90177 * 21 19 18 23 23 C 1.42308 * 117.07324 * 302.65035 * 22 21 19 24 24 C 1.53073 * 112.28377 * 52.87768 * 23 22 21 25 25 C 1.51557 * 106.98337 * 306.24312 * 24 23 22 26 26 H 1.09001 * 111.21317 * 301.72614 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 32 32 H 1.09004 * 110.11475 * 244.25906 * 18 17 15 33 33 H 1.09001 * 110.12856 * 122.55721 * 18 17 15 34 34 H 1.09005 * 110.06143 * 296.12428 * 21 19 18 35 35 H 1.08998 * 110.06088 * 57.67624 * 21 19 18 36 36 H 1.09000 * 108.93763 * 173.78917 * 23 22 21 37 37 H 1.08998 * 108.93774 * 292.48553 * 23 22 21 38 38 H 1.08999 * 110.12244 * 186.66832 * 24 23 22 39 39 H 1.09005 * 109.49225 * 65.46682 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 2.0315 -1.6006 3.8045 17 8 2.6752 0.1736 4.7234 18 6 3.9949 0.7643 4.8394 19 6 4.7923 0.2481 3.6522 20 1 4.6320 0.8939 2.7889 21 6 6.2699 -0.0263 3.8219 22 8 6.7301 -0.5669 2.5693 23 6 6.0828 -1.7418 2.0941 24 6 4.5612 -1.5839 2.0382 25 6 4.1118 -1.1359 3.4145 26 1 4.4075 -1.8542 4.1792 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7093 1.1619 -3.4844 31 1 2.2491 -1.6318 1.1525 32 1 4.4649 0.4516 5.7719 33 1 3.9241 1.8513 4.8001 34 1 6.7989 0.9001 4.0461 35 1 6.4263 -0.7503 4.6215 36 1 6.4538 -1.9706 1.0951 37 1 6.3229 -2.5715 2.7589 38 1 4.0946 -2.5357 1.7843 39 1 4.3009 -0.8291 1.2961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408219397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:51 Heat of formation + Delta-G solvation = -124.763725 kcal Electronic energy + Delta-G solvation = -22142.874942 eV Core-core repulsion = 18857.616528 eV Total energy + Delta-G solvation = -3285.258414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04145 -38.47511 -37.30032 -34.78249 -33.44293 -32.28453 -31.75873 -29.51946 -28.05616 -25.70239 -25.26266 -23.64117 -22.38392 -20.87217 -20.41754 -19.43597 -17.35172 -16.55927 -16.11398 -15.88855 -15.83641 -15.28479 -15.07109 -14.87788 -14.20642 -13.91582 -13.87470 -13.42872 -12.98762 -12.93658 -12.40773 -12.19986 -11.77912 -11.38748 -11.29978 -11.19556 -11.08830 -10.95098 -10.73858 -10.69737 -10.35266 -10.26689 -10.24974 -10.03970 -9.67957 -9.07481 -8.72115 -8.53757 -7.90966 -6.13758 -4.23665 3.23445 3.25575 3.29457 3.29981 3.62002 3.73682 4.04138 4.12303 4.35045 4.54348 4.66252 4.99081 5.11664 5.14069 5.18503 5.20209 5.33461 5.37311 5.45773 5.56569 5.59099 5.69187 5.73124 5.77055 5.96705 6.11609 6.33591 6.74790 6.82246 6.96055 7.14205 7.17668 7.43670 7.54253 7.67120 7.89613 8.13420 8.62637 8.76073 9.09542 9.44058 10.92142 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.006395 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.955431 B = 4377.397391 C = 5278.406616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.488 3.512 14 O -0.539 6.539 15 C 0.069 3.931 16 H 0.116 0.884 17 O -0.356 6.356 18 C 0.068 3.932 19 C -0.171 4.171 20 H 0.099 0.901 21 C 0.086 3.914 22 O -0.387 6.387 23 C 0.070 3.930 24 C -0.157 4.157 25 C -0.119 4.119 26 H 0.094 0.906 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.870 -6.533 11.935 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.357 5.357 13 C 0.271 3.729 14 O -0.416 6.416 15 C 0.008 3.992 16 H 0.134 0.866 17 O -0.274 6.274 18 C -0.009 4.009 19 C -0.190 4.190 20 H 0.117 0.883 21 C 0.009 3.991 22 O -0.305 6.305 23 C -0.007 4.007 24 C -0.194 4.194 25 C -0.138 4.138 26 H 0.112 0.888 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.536 -5.408 11.844 15.569 hybrid contribution 0.181 -1.104 -0.892 1.431 sum 8.718 -6.511 10.952 15.438 Atomic orbital electron populations 1.22086 0.98531 0.99110 1.00929 1.18730 0.91008 0.93951 0.79916 0.93469 1.21152 1.32599 1.13232 0.90277 0.92128 1.24881 0.94778 0.94925 0.99037 1.69889 1.35724 1.22370 1.24019 0.86526 0.79182 0.79588 0.81907 1.20166 1.21125 1.20147 1.46659 1.65131 1.13505 1.10395 1.20711 0.79213 0.88042 0.84902 1.90667 1.50287 1.15897 1.84774 1.22610 0.96698 0.92635 0.87241 0.86595 1.89098 1.31242 1.61241 1.45823 1.22643 0.82981 0.98617 0.96657 1.23126 0.97111 0.97510 1.01260 0.88290 1.22175 0.92059 0.98720 0.86121 1.87791 1.60036 1.44309 1.38414 1.22368 0.91865 0.86538 0.99899 1.22152 0.96612 1.04102 0.96556 1.22551 0.94009 0.97649 0.99598 0.88774 0.96652 0.95468 0.89157 0.92488 0.77931 0.91296 0.90398 0.88385 0.92655 0.88408 0.93866 0.89800 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.27 6.68 2.56 -69.08 -0.18 6.50 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.78 11.32 55.43 0.63 -24.15 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.31 3.62 -54.93 -0.20 -14.51 16 13 C 0.49 9.84 5.85 -10.99 -0.06 9.78 16 14 O -0.54 -13.39 16.23 -13.42 -0.22 -13.61 16 15 C 0.07 1.07 3.97 -27.97 -0.11 0.96 16 16 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 17 O -0.36 -5.90 10.80 -54.21 -0.59 -6.48 16 18 C 0.07 0.89 7.54 36.67 0.28 1.17 16 19 C -0.17 -2.27 2.21 -90.36 -0.20 -2.47 16 20 H 0.10 1.67 7.53 -51.93 -0.39 1.27 16 21 C 0.09 0.94 6.77 36.27 0.25 1.18 16 22 O -0.39 -5.16 10.63 -35.23 -0.37 -5.54 16 23 C 0.07 0.81 6.81 37.20 0.25 1.06 16 24 C -0.16 -1.99 4.20 -27.42 -0.12 -2.10 16 25 C -0.12 -1.49 2.45 -89.81 -0.22 -1.71 16 26 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.39 6.69 7.00 -40.82 -0.29 6.40 16 32 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.90 7.72 -51.93 -0.40 0.50 16 39 H 0.10 1.63 6.32 -51.93 -0.33 1.31 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -31.75 308.60 -7.16 -38.90 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.87 Total: 6.79 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.16 Total: -1.40 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.43 Total: -38.66 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -1.18 Total: -25.63 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.75 -7.16 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408219397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.859 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds