Wall clock time and date at job start Mon Mar 30 2020 04:35:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47533 * 2 1
4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3
5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1
6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1
7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4
10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4
11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4
12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3
13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1
14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2
15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2
16 16 H 1.09000 * 110.53554 * 304.30465 * 15 13 12
17 17 O 1.45090 * 110.60474 * 181.45696 * 15 13 12
18 18 C 1.45048 * 109.41633 * 266.14665 * 17 15 13
19 19 C 1.52048 * 106.04644 * 3.40136 * 18 17 15
20 20 H 1.08998 * 109.88567 * 86.83614 * 19 18 17
21 21 C 1.51240 * 119.10152 * 214.80093 * 19 18 17
22 22 O 1.43982 * 106.42497 * 176.90177 * 21 19 18
23 23 C 1.42308 * 117.07324 * 302.65035 * 22 21 19
24 24 C 1.53073 * 112.28377 * 52.87768 * 23 22 21
25 25 C 1.51557 * 106.98337 * 306.24312 * 24 23 22
26 26 H 1.09001 * 111.21317 * 301.72614 * 25 24 23
27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3
28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3
30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4
31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1
32 32 H 1.09004 * 110.11475 * 244.25906 * 18 17 15
33 33 H 1.09001 * 110.12856 * 122.55721 * 18 17 15
34 34 H 1.09005 * 110.06143 * 296.12428 * 21 19 18
35 35 H 1.08998 * 110.06088 * 57.67624 * 21 19 18
36 36 H 1.09000 * 108.93763 * 173.78917 * 23 22 21
37 37 H 1.08998 * 108.93774 * 292.48553 * 23 22 21
38 38 H 1.08999 * 110.12244 * 186.66832 * 24 23 22
39 39 H 1.09005 * 109.49225 * 65.46682 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7103 -1.2306
5 1 2.6533 -1.5884 -1.1315
6 6 1.6992 -0.2392 -2.4828
7 7 0.9434 0.8302 -2.6034
8 14 2.3213 -1.1201 -4.0080
9 1 1.8258 -2.5200 -4.0078
10 1 1.8268 -0.4196 -5.2205
11 1 3.8063 -1.1207 -4.0083
12 7 2.0184 -0.6906 1.1961
13 6 2.1471 -0.0184 2.3570
14 8 1.8590 1.1585 2.4115
15 6 2.6490 -0.7289 3.5877
16 1 2.0315 -1.6006 3.8045
17 8 2.6752 0.1736 4.7234
18 6 3.9949 0.7643 4.8394
19 6 4.7923 0.2481 3.6522
20 1 4.6320 0.8939 2.7889
21 6 6.2699 -0.0263 3.8219
22 8 6.7301 -0.5669 2.5693
23 6 6.0828 -1.7418 2.0941
24 6 4.5612 -1.5839 2.0382
25 6 4.1118 -1.1359 3.4145
26 1 4.4075 -1.8542 4.1792
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5139 -0.8900
30 1 0.7093 1.1619 -3.4844
31 1 2.2491 -1.6318 1.1525
32 1 4.4649 0.4516 5.7719
33 1 3.9241 1.8513 4.8001
34 1 6.7989 0.9001 4.0461
35 1 6.4263 -0.7503 4.6215
36 1 6.4538 -1.9706 1.0951
37 1 6.3229 -2.5715 2.7589
38 1 4.0946 -2.5357 1.7843
39 1 4.3009 -0.8291 1.2961
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000408219397.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:35:50
Heat of formation + Delta-G solvation = -147.475025 kcal
Electronic energy + Delta-G solvation = -22143.859778 eV
Core-core repulsion = 18857.616528 eV
Total energy + Delta-G solvation = -3286.243250 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-42.22631 -39.91654 -38.51791 -36.68102 -34.80728 -33.92058 -32.85007 -31.16078
-29.47565 -27.36180 -26.68654 -24.80976 -23.68110 -22.26937 -21.69200 -21.10406
-18.95872 -17.79333 -17.49728 -17.43948 -16.96782 -16.73225 -16.31939 -16.09225
-15.65782 -15.46277 -15.13499 -14.66339 -14.48247 -14.28015 -13.98255 -13.72909
-13.23438 -13.01485 -12.89651 -12.75687 -12.57318 -12.32825 -12.28557 -12.21452
-12.13629 -11.66593 -11.39773 -11.16833 -11.10328 -10.63694 -10.58690 -10.23035
-9.74492 -8.18084 -6.36108 1.44257 1.46634 1.54199 1.70848 2.25481
2.46865 2.75456 2.87832 3.00743 3.12632 3.51959 3.64462 3.89020
4.07192 4.14375 4.19934 4.30587 4.40739 4.44161 4.64509 4.68940
4.69346 4.72731 4.77042 4.81458 4.88470 5.02484 5.06705 5.08623
5.30690 5.40417 5.58273 5.59525 5.67023 5.89686 6.07418 6.32315
6.71313 6.92360 7.31196 7.52091 8.88320
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.021176 B = 0.006395 C = 0.005303
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1321.955431 B = 4377.397391 C = 5278.406616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.273 3.727
3 H -0.009 1.009
4 C -0.543 4.543
5 H 0.078 0.922
6 C 0.013 3.987
7 N -0.920 5.920
8 Si 0.972 3.028
9 H -0.261 1.261
10 H -0.289 1.289
11 H -0.270 1.270
12 N -0.695 5.695
13 C 0.482 3.518
14 O -0.597 6.597
15 C 0.075 3.925
16 H 0.151 0.849
17 O -0.379 6.379
18 C 0.063 3.937
19 C -0.168 4.168
20 H 0.046 0.954
21 C 0.089 3.911
22 O -0.413 6.413
23 C 0.069 3.931
24 C -0.156 4.156
25 C -0.107 4.107
26 H 0.139 0.861
27 H 0.007 0.993
28 H 0.044 0.956
29 H 0.066 0.934
30 H 0.265 0.735
31 H 0.406 0.594
32 H 0.113 0.887
33 H 0.060 0.940
34 H 0.107 0.893
35 H 0.092 0.908
36 H 0.096 0.904
37 H 0.078 0.922
38 H 0.108 0.892
39 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.558 -9.887 13.240 19.609
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.169 3.831
3 H 0.009 0.991
4 C -0.581 4.581
5 H 0.096 0.904
6 C -0.187 4.187
7 N -0.559 5.559
8 Si 0.796 3.204
9 H -0.185 1.185
10 H -0.215 1.215
11 H -0.195 1.195
12 N -0.346 5.346
13 C 0.268 3.732
14 O -0.478 6.478
15 C 0.014 3.986
16 H 0.169 0.831
17 O -0.297 6.297
18 C -0.013 4.013
19 C -0.187 4.187
20 H 0.064 0.936
21 C 0.013 3.987
22 O -0.333 6.333
23 C -0.008 4.008
24 C -0.194 4.194
25 C -0.125 4.125
26 H 0.157 0.843
27 H 0.026 0.974
28 H 0.063 0.937
29 H 0.085 0.915
30 H 0.074 0.926
31 H 0.242 0.758
32 H 0.130 0.870
33 H 0.079 0.921
34 H 0.125 0.875
35 H 0.110 0.890
36 H 0.114 0.886
37 H 0.096 0.904
38 H 0.127 0.873
39 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 10.243 -8.809 13.173 18.869
hybrid contribution -0.348 0.032 -1.269 1.316
sum 9.896 -8.777 11.904 17.795
Atomic orbital electron populations
1.21916 0.98528 0.99584 0.99347 1.18294 0.90934 0.91689 0.82137
0.99145 1.21493 1.32548 1.13588 0.90469 0.90370 1.25829 0.94851
0.95548 1.02449 1.70058 1.37110 1.24057 1.24645 0.85398 0.78671
0.78824 0.77470 1.18505 1.21459 1.19502 1.46336 1.64814 1.14153
1.09329 1.21790 0.77704 0.87521 0.86163 1.90634 1.52668 1.18681
1.85806 1.22701 0.99172 0.92420 0.84314 0.83142 1.89077 1.33316
1.61772 1.45554 1.22832 0.82049 0.97834 0.98553 1.23035 0.99270
0.97210 0.99188 0.93555 1.22335 0.89928 1.00194 0.86227 1.87757
1.60493 1.45282 1.39722 1.22469 0.90468 0.86961 1.00883 1.22127
0.98137 1.03725 0.95433 1.22632 0.91329 0.97897 1.00691 0.84284
0.97400 0.93713 0.91543 0.92611 0.75794 0.86955 0.92138 0.87536
0.89025 0.88591 0.90371 0.87347 0.92995
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -7.00 9.26 71.98 0.67 -6.34 16
2 C 0.27 14.31 2.56 44.25 0.11 14.43 16
3 H -0.01 -0.59 7.58 -2.39 -0.02 -0.61 16
4 C -0.54 -28.38 8.73 25.60 0.22 -28.16 16
5 H 0.08 3.72 7.74 -2.91 -0.02 3.69 16
6 C 0.01 0.70 5.30 84.65 0.45 1.15 16
7 N -0.92 -53.42 11.32 21.45 0.24 -53.17 16
8 Si 0.97 41.65 29.54 68.60 2.03 43.67 16
9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16
10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16
11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16
12 N -0.70 -28.60 3.62 -446.10 -1.62 -30.22 16
13 C 0.48 19.93 5.85 87.66 0.51 20.44 16
14 O -0.60 -31.53 16.23 15.13 0.25 -31.29 16
15 C 0.07 2.16 3.97 29.79 0.12 2.28 16
16 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16
17 O -0.38 -12.04 10.80 -130.83 -1.41 -13.45 16
18 C 0.06 1.58 7.54 71.67 0.54 2.12 16
19 C -0.17 -4.25 2.21 -10.63 -0.02 -4.27 16
20 H 0.05 1.65 7.53 -2.39 -0.02 1.63 16
21 C 0.09 1.70 6.77 71.41 0.48 2.18 16
22 O -0.41 -10.18 10.63 -148.98 -1.58 -11.76 16
23 C 0.07 1.38 6.81 72.01 0.49 1.87 16
24 C -0.16 -3.63 4.20 30.15 0.13 -3.50 16
25 C -0.11 -2.34 2.45 -10.27 -0.03 -2.37 16
26 H 0.14 1.97 8.06 -2.39 -0.02 1.95 16
27 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16
28 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16
29 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16
30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16
31 H 0.41 13.56 7.00 -92.71 -0.65 12.91 16
32 H 0.11 1.87 8.11 -2.38 -0.02 1.85 16
33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
34 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16
35 H 0.09 1.14 8.07 -2.39 -0.02 1.12 16
36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
38 H 0.11 1.94 7.72 -2.39 -0.02 1.92 16
39 H 0.05 1.72 6.32 -2.38 -0.02 1.71 16
Total: -1.00 -74.44 308.60 1.98 -72.46
By element:
Atomic # 1 Polarization: 23.50 SS G_CDS: 0.40 Total: 23.90 kcal
Atomic # 6 Polarization: -3.82 SS G_CDS: 3.68 Total: -0.15 kcal
Atomic # 7 Polarization: -82.02 SS G_CDS: -1.37 Total: -83.39 kcal
Atomic # 8 Polarization: -53.75 SS G_CDS: -2.75 Total: -56.50 kcal
Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal
Total: -74.44 1.98 -72.46 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408219397.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.014 kcal
(2) G-P(sol) polarization free energy of solvation -74.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.475 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds