Wall clock time and date at job start Mon Mar 30 2020 04:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.53554 * 304.30465 * 15 13 12 17 17 O 1.45090 * 110.60474 * 181.45696 * 15 13 12 18 18 C 1.45048 * 109.41633 * 266.14665 * 17 15 13 19 19 C 1.52048 * 106.04644 * 3.40136 * 18 17 15 20 20 H 1.08998 * 109.88567 * 86.83614 * 19 18 17 21 21 C 1.51240 * 119.10152 * 214.80093 * 19 18 17 22 22 O 1.43982 * 106.42497 * 176.90177 * 21 19 18 23 23 C 1.42308 * 117.07324 * 302.65035 * 22 21 19 24 24 C 1.53073 * 112.28377 * 52.87768 * 23 22 21 25 25 C 1.51557 * 106.98337 * 306.24312 * 24 23 22 26 26 H 1.09001 * 111.21317 * 301.72614 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 32 32 H 1.09004 * 110.11475 * 244.25906 * 18 17 15 33 33 H 1.09001 * 110.12856 * 122.55721 * 18 17 15 34 34 H 1.09005 * 110.06143 * 296.12428 * 21 19 18 35 35 H 1.08998 * 110.06088 * 57.67624 * 21 19 18 36 36 H 1.09000 * 108.93763 * 173.78917 * 23 22 21 37 37 H 1.08998 * 108.93774 * 292.48553 * 23 22 21 38 38 H 1.08999 * 110.12244 * 186.66832 * 24 23 22 39 39 H 1.09005 * 109.49225 * 65.46682 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 2.0315 -1.6006 3.8045 17 8 2.6752 0.1736 4.7234 18 6 3.9949 0.7643 4.8394 19 6 4.7923 0.2481 3.6522 20 1 4.6320 0.8939 2.7889 21 6 6.2699 -0.0263 3.8219 22 8 6.7301 -0.5669 2.5693 23 6 6.0828 -1.7418 2.0941 24 6 4.5612 -1.5839 2.0382 25 6 4.1118 -1.1359 3.4145 26 1 4.4075 -1.8542 4.1792 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7093 1.1619 -3.4844 31 1 2.2491 -1.6318 1.1525 32 1 4.4649 0.4516 5.7719 33 1 3.9241 1.8513 4.8001 34 1 6.7989 0.9001 4.0461 35 1 6.4263 -0.7503 4.6215 36 1 6.4538 -1.9706 1.0951 37 1 6.3229 -2.5715 2.7589 38 1 4.0946 -2.5357 1.7843 39 1 4.3009 -0.8291 1.2961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408219397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:50 Heat of formation + Delta-G solvation = -147.475025 kcal Electronic energy + Delta-G solvation = -22143.859778 eV Core-core repulsion = 18857.616528 eV Total energy + Delta-G solvation = -3286.243250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.22631 -39.91654 -38.51791 -36.68102 -34.80728 -33.92058 -32.85007 -31.16078 -29.47565 -27.36180 -26.68654 -24.80976 -23.68110 -22.26937 -21.69200 -21.10406 -18.95872 -17.79333 -17.49728 -17.43948 -16.96782 -16.73225 -16.31939 -16.09225 -15.65782 -15.46277 -15.13499 -14.66339 -14.48247 -14.28015 -13.98255 -13.72909 -13.23438 -13.01485 -12.89651 -12.75687 -12.57318 -12.32825 -12.28557 -12.21452 -12.13629 -11.66593 -11.39773 -11.16833 -11.10328 -10.63694 -10.58690 -10.23035 -9.74492 -8.18084 -6.36108 1.44257 1.46634 1.54199 1.70848 2.25481 2.46865 2.75456 2.87832 3.00743 3.12632 3.51959 3.64462 3.89020 4.07192 4.14375 4.19934 4.30587 4.40739 4.44161 4.64509 4.68940 4.69346 4.72731 4.77042 4.81458 4.88470 5.02484 5.06705 5.08623 5.30690 5.40417 5.58273 5.59525 5.67023 5.89686 6.07418 6.32315 6.71313 6.92360 7.31196 7.52091 8.88320 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.006395 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.955431 B = 4377.397391 C = 5278.406616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.273 3.727 3 H -0.009 1.009 4 C -0.543 4.543 5 H 0.078 0.922 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.289 1.289 11 H -0.270 1.270 12 N -0.695 5.695 13 C 0.482 3.518 14 O -0.597 6.597 15 C 0.075 3.925 16 H 0.151 0.849 17 O -0.379 6.379 18 C 0.063 3.937 19 C -0.168 4.168 20 H 0.046 0.954 21 C 0.089 3.911 22 O -0.413 6.413 23 C 0.069 3.931 24 C -0.156 4.156 25 C -0.107 4.107 26 H 0.139 0.861 27 H 0.007 0.993 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.558 -9.887 13.240 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.169 3.831 3 H 0.009 0.991 4 C -0.581 4.581 5 H 0.096 0.904 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.185 1.185 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.346 5.346 13 C 0.268 3.732 14 O -0.478 6.478 15 C 0.014 3.986 16 H 0.169 0.831 17 O -0.297 6.297 18 C -0.013 4.013 19 C -0.187 4.187 20 H 0.064 0.936 21 C 0.013 3.987 22 O -0.333 6.333 23 C -0.008 4.008 24 C -0.194 4.194 25 C -0.125 4.125 26 H 0.157 0.843 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.243 -8.809 13.173 18.869 hybrid contribution -0.348 0.032 -1.269 1.316 sum 9.896 -8.777 11.904 17.795 Atomic orbital electron populations 1.21916 0.98528 0.99584 0.99347 1.18294 0.90934 0.91689 0.82137 0.99145 1.21493 1.32548 1.13588 0.90469 0.90370 1.25829 0.94851 0.95548 1.02449 1.70058 1.37110 1.24057 1.24645 0.85398 0.78671 0.78824 0.77470 1.18505 1.21459 1.19502 1.46336 1.64814 1.14153 1.09329 1.21790 0.77704 0.87521 0.86163 1.90634 1.52668 1.18681 1.85806 1.22701 0.99172 0.92420 0.84314 0.83142 1.89077 1.33316 1.61772 1.45554 1.22832 0.82049 0.97834 0.98553 1.23035 0.99270 0.97210 0.99188 0.93555 1.22335 0.89928 1.00194 0.86227 1.87757 1.60493 1.45282 1.39722 1.22469 0.90468 0.86961 1.00883 1.22127 0.98137 1.03725 0.95433 1.22632 0.91329 0.97897 1.00691 0.84284 0.97400 0.93713 0.91543 0.92611 0.75794 0.86955 0.92138 0.87536 0.89025 0.88591 0.90371 0.87347 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.00 9.26 71.98 0.67 -6.34 16 2 C 0.27 14.31 2.56 44.25 0.11 14.43 16 3 H -0.01 -0.59 7.58 -2.39 -0.02 -0.61 16 4 C -0.54 -28.38 8.73 25.60 0.22 -28.16 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.17 16 8 Si 0.97 41.65 29.54 68.60 2.03 43.67 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 N -0.70 -28.60 3.62 -446.10 -1.62 -30.22 16 13 C 0.48 19.93 5.85 87.66 0.51 20.44 16 14 O -0.60 -31.53 16.23 15.13 0.25 -31.29 16 15 C 0.07 2.16 3.97 29.79 0.12 2.28 16 16 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 17 O -0.38 -12.04 10.80 -130.83 -1.41 -13.45 16 18 C 0.06 1.58 7.54 71.67 0.54 2.12 16 19 C -0.17 -4.25 2.21 -10.63 -0.02 -4.27 16 20 H 0.05 1.65 7.53 -2.39 -0.02 1.63 16 21 C 0.09 1.70 6.77 71.41 0.48 2.18 16 22 O -0.41 -10.18 10.63 -148.98 -1.58 -11.76 16 23 C 0.07 1.38 6.81 72.01 0.49 1.87 16 24 C -0.16 -3.63 4.20 30.15 0.13 -3.50 16 25 C -0.11 -2.34 2.45 -10.27 -0.03 -2.37 16 26 H 0.14 1.97 8.06 -2.39 -0.02 1.95 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 28 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.41 13.56 7.00 -92.71 -0.65 12.91 16 32 H 0.11 1.87 8.11 -2.38 -0.02 1.85 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.09 1.14 8.07 -2.39 -0.02 1.12 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 1.94 7.72 -2.39 -0.02 1.92 16 39 H 0.05 1.72 6.32 -2.38 -0.02 1.71 16 Total: -1.00 -74.44 308.60 1.98 -72.46 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.40 Total: 23.90 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 3.68 Total: -0.15 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.37 Total: -83.39 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -2.75 Total: -56.50 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -74.44 1.98 -72.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408219397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.014 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds