Wall clock time and date at job start Mon Mar 30 2020 04:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.34774 * 120.00476 * 275.00648 * 12 2 1 14 14 O 1.21276 * 119.99690 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00074 * 179.97438 * 13 12 2 16 16 H 1.09005 * 109.77408 * 304.29613 * 15 13 12 17 17 O 1.43158 * 109.78195 * 183.53083 * 15 13 12 18 18 C 1.43849 * 108.99012 * 221.74876 * 17 15 13 19 19 C 1.53403 * 104.83790 * 30.57104 * 18 17 15 20 20 H 1.08998 * 106.65617 * 82.75559 * 19 18 17 21 21 C 1.49334 * 113.32422 * 200.34737 * 19 18 17 22 22 O 1.41383 * 115.88433 * 93.81096 * 21 19 18 23 23 C 1.42775 * 115.01525 * 45.56288 * 22 21 19 24 24 C 1.51770 * 108.22733 * 297.18654 * 23 22 21 25 25 C 1.52486 * 104.71762 * 329.74017 * 19 18 17 26 26 H 1.08993 * 111.05795 * 138.30268 * 25 19 18 27 27 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 28 28 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 30 30 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 31 31 H 0.97008 * 119.99239 * 95.00725 * 12 2 1 32 32 H 1.08998 * 110.34701 * 271.73193 * 18 17 15 33 33 H 1.08999 * 110.47148 * 149.46211 * 18 17 15 34 34 H 1.09001 * 108.19926 * 215.47237 * 21 19 18 35 35 H 1.09007 * 108.19910 * 332.34988 * 21 19 18 36 36 H 1.09008 * 109.76481 * 56.44183 * 23 22 21 37 37 H 1.08995 * 109.77523 * 177.17592 * 23 22 21 38 38 H 1.09007 * 108.42979 * 303.21265 * 24 23 22 39 39 H 1.08999 * 109.81347 * 183.73561 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6489 -0.7288 3.5877 16 1 2.0232 -1.5973 3.7931 17 8 2.6221 0.1633 4.7071 18 6 3.8239 -0.0156 5.4772 19 6 4.8881 -0.4313 4.4535 20 1 5.2596 0.4869 3.9986 21 6 6.0607 -1.1228 5.0674 22 8 5.9996 -2.5350 5.0949 23 6 5.5763 -3.1449 3.8753 24 6 4.1567 -2.6925 3.5861 25 6 4.1146 -1.1781 3.3722 26 1 4.4678 -0.9041 2.3781 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.7087 1.1613 -3.4844 31 1 2.2492 -1.6317 1.1525 32 1 3.6846 -0.8009 6.2200 33 1 4.1084 0.9182 5.9621 34 1 6.9547 -0.8315 4.5160 35 1 6.1656 -0.7694 6.0933 36 1 6.2283 -2.8305 3.0603 37 1 5.6078 -4.2298 3.9751 38 1 3.5307 -2.9558 4.4387 39 1 3.7833 -3.1952 2.6939 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408219399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:53 Heat of formation + Delta-G solvation = -133.801450 kcal Electronic energy + Delta-G solvation = -21604.791291 eV Core-core repulsion = 18319.140972 eV Total energy + Delta-G solvation = -3285.650319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96962 -38.72958 -37.49769 -34.76897 -33.58871 -32.44159 -32.22254 -29.69900 -28.02121 -25.60471 -25.27693 -23.94362 -23.14929 -21.02385 -19.53596 -19.37973 -17.69537 -16.74110 -16.70782 -15.97905 -15.55588 -15.36948 -15.34868 -14.76418 -14.53982 -13.96241 -13.71587 -13.48261 -13.28499 -12.94049 -12.51848 -12.38187 -11.90451 -11.70632 -11.31412 -11.10843 -11.09447 -10.97185 -10.86619 -10.71720 -10.51309 -10.32711 -10.25249 -9.85478 -9.79765 -9.07949 -8.77471 -8.56211 -7.93825 -6.14342 -4.24257 3.22708 3.24758 3.28456 3.29331 3.56363 3.64756 4.09896 4.24474 4.33350 4.44344 4.60542 4.76209 4.88319 5.08347 5.14274 5.17635 5.24386 5.33207 5.37756 5.42017 5.51154 5.58311 5.62939 5.72151 5.79600 5.90336 6.08456 6.80100 6.89723 6.96465 7.04690 7.13964 7.43452 7.54578 7.67107 7.89542 8.13042 8.62581 8.75777 9.09967 9.43340 10.91549 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.005126 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.701990 B = 5461.207722 C = 6263.745541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.285 1.285 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.496 3.504 14 O -0.535 6.535 15 C 0.066 3.934 16 H 0.093 0.907 17 O -0.347 6.347 18 C 0.059 3.941 19 C -0.157 4.157 20 H 0.086 0.914 21 C 0.083 3.917 22 O -0.379 6.379 23 C 0.062 3.938 24 C -0.153 4.153 25 C -0.100 4.100 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.015 0.985 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -7.861 13.182 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.201 1.201 12 N -0.357 5.357 13 C 0.279 3.721 14 O -0.412 6.412 15 C 0.005 3.995 16 H 0.110 0.890 17 O -0.265 6.265 18 C -0.018 4.018 19 C -0.176 4.176 20 H 0.105 0.895 21 C 0.005 3.995 22 O -0.297 6.297 23 C -0.015 4.015 24 C -0.191 4.191 25 C -0.119 4.119 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.429 -6.797 13.259 17.119 hybrid contribution 0.415 -0.803 -1.248 1.541 sum 8.844 -7.600 12.011 16.740 Atomic orbital electron populations 1.22083 0.98435 0.99145 1.00964 1.18745 0.91074 0.93956 0.79793 0.93421 1.21155 1.32616 1.13247 0.90286 0.92150 1.24892 0.94796 0.94949 0.99046 1.69898 1.35674 1.22384 1.24024 0.86502 0.79111 0.79593 0.81845 1.21098 1.20214 1.20149 1.46474 1.65459 1.13449 1.10286 1.20379 0.79342 0.87815 0.84522 1.90671 1.49939 1.15881 1.84727 1.23009 0.96390 0.92752 0.87396 0.88986 1.88632 1.39360 1.61277 1.37217 1.23271 0.83469 1.01350 0.93669 1.21849 0.97596 1.01043 0.97133 0.89546 1.21221 0.95306 0.81196 1.01741 1.87605 1.87894 1.18756 1.35472 1.22325 0.94005 0.98200 0.86936 1.22096 0.98864 0.94666 1.03483 1.22090 0.93722 0.95771 1.00321 0.87962 0.89106 0.95435 0.96617 0.92477 0.78071 0.91999 0.89014 0.93343 0.88952 0.92800 0.88262 0.90522 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.27 6.78 2.56 -69.09 -0.18 6.60 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.71 -14.63 5.04 -54.93 -0.28 -14.90 16 13 C 0.50 10.29 6.94 -10.99 -0.08 10.21 16 14 O -0.54 -13.73 16.18 -14.13 -0.23 -13.96 16 15 C 0.07 1.04 3.47 -26.93 -0.09 0.94 16 16 H 0.09 1.27 7.31 -51.93 -0.38 0.89 16 17 O -0.35 -5.87 10.61 -54.92 -0.58 -6.45 16 18 C 0.06 0.71 7.10 37.37 0.27 0.98 16 19 C -0.16 -1.78 2.73 -92.48 -0.25 -2.03 16 20 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 21 C 0.08 0.78 6.40 35.35 0.23 1.01 16 22 O -0.38 -4.05 10.70 -35.10 -0.38 -4.42 16 23 C 0.06 0.57 6.83 36.53 0.25 0.82 16 24 C -0.15 -1.52 5.16 -27.35 -0.14 -1.66 16 25 C -0.10 -1.26 3.04 -89.93 -0.27 -1.53 16 26 H 0.10 1.41 7.73 -51.93 -0.40 1.01 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 6.75 8.54 -40.82 -0.35 6.40 16 32 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.73 7.84 -51.92 -0.41 0.32 16 36 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.75 7.68 -51.93 -0.40 0.35 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -32.31 314.22 -7.43 -39.74 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.99 Total: 4.70 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.32 Total: -0.62 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.35 Total: -39.07 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.19 Total: -24.83 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.31 -7.43 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408219399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.060 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds