Wall clock time and date at job start Mon Mar 30 2020 05:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99649 * 2 1 4 4 H 1.48506 * 109.47302 * 269.99887 * 3 2 1 5 5 H 1.48500 * 109.47281 * 29.99567 * 3 2 1 6 6 H 1.48497 * 109.47351 * 149.99867 * 3 2 1 7 7 C 1.37877 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99555 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00112 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47328 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99984 * 179.72743 * 10 9 7 12 12 O 1.21586 * 120.00024 * 355.29259 * 11 10 9 13 13 N 1.34776 * 120.00131 * 175.29524 * 11 10 9 14 14 C 1.47129 * 121.00969 * 5.20879 * 13 11 10 15 15 C 1.53114 * 108.22951 * 128.10205 * 14 13 11 16 16 N 1.47141 * 109.65104 * 54.46604 * 15 14 13 17 17 C 1.47169 * 109.78686 * 173.80509 * 16 15 14 18 18 C 1.52969 * 109.65926 * 181.23383 * 17 16 15 19 19 O 1.43097 * 108.90434 * 302.62952 * 18 17 16 20 20 C 1.42873 * 113.35928 * 59.58528 * 19 18 17 21 21 C 1.46939 * 111.31609 * 297.21194 * 16 15 14 22 22 H 1.09002 * 109.59602 * 301.07258 * 21 16 15 23 23 C 1.46938 * 121.01342 * 184.92924 * 13 11 10 24 24 H 0.96997 * 120.00356 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47343 * 60.00103 * 9 7 2 26 26 H 1.09000 * 109.47526 * 300.00499 * 9 7 2 27 27 H 0.96999 * 119.99713 * 359.97438 * 10 9 7 28 28 H 1.09003 * 109.71352 * 247.78944 * 14 13 11 29 29 H 1.09003 * 109.71248 * 8.42146 * 14 13 11 30 30 H 1.09003 * 109.44639 * 174.52036 * 15 14 13 31 31 H 1.09008 * 109.44149 * 294.44633 * 15 14 13 32 32 H 1.08995 * 109.43504 * 301.29282 * 17 16 15 33 33 H 1.09000 * 109.43991 * 61.21332 * 17 16 15 34 34 H 1.09000 * 109.56260 * 62.45220 * 18 17 16 35 35 H 1.08998 * 109.56469 * 182.80385 * 18 17 16 36 36 H 1.09001 * 109.43134 * 61.11008 * 20 19 18 37 37 H 1.08998 * 109.43137 * 181.01125 * 20 19 18 38 38 H 1.09000 * 109.56438 * 351.23536 * 23 13 11 39 39 H 1.08998 * 109.56250 * 111.57359 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0027 11 6 1.7541 -4.8832 0.0094 12 8 0.5624 -5.1063 0.1010 13 7 2.6259 -5.9067 -0.0854 14 6 4.0778 -5.6684 -0.0829 15 6 4.7088 -6.5675 0.9838 16 7 4.3205 -7.9665 0.7447 17 6 5.0416 -8.8497 1.6752 18 6 4.6590 -10.3056 1.4037 19 8 3.2404 -10.4438 1.5312 20 6 2.5070 -9.6153 0.6273 21 6 2.8671 -8.1455 0.8653 22 1 2.5435 -7.8465 1.8623 23 6 2.1554 -7.2949 -0.1884 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6249 -2.5563 0.8919 27 1 3.1570 -3.4353 0.0022 28 1 4.4921 -5.9121 -1.0612 29 1 4.2784 -4.6231 0.1519 30 1 5.7943 -6.4792 0.9370 31 1 4.3620 -6.2588 1.9700 32 1 6.1153 -8.7246 1.5356 33 1 4.7764 -8.5906 2.7003 34 1 4.9631 -10.5807 0.3938 35 1 5.1552 -10.9542 2.1256 36 1 2.7563 -9.8881 -0.3981 37 1 1.4388 -9.7572 0.7909 38 1 1.0794 -7.3293 -0.0174 39 1 2.3815 -7.6842 -1.1810 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408365872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:59 Heat of formation + Delta-G solvation = -82.804130 kcal Electronic energy + Delta-G solvation = -21199.854631 eV Core-core repulsion = 17948.708473 eV Total energy + Delta-G solvation = -3251.146158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67340 -40.40012 -37.95714 -36.25955 -35.39857 -34.44244 -33.19541 -31.25326 -29.43106 -27.28464 -26.81792 -24.66463 -24.19587 -23.04524 -21.43964 -20.75497 -19.58302 -18.10521 -17.69627 -17.30171 -16.99982 -16.68516 -16.49032 -16.24814 -15.84399 -15.65977 -15.25971 -14.97014 -14.91077 -14.74332 -14.08022 -13.83740 -13.24061 -13.09702 -12.89887 -12.87742 -12.70989 -12.62769 -12.36405 -12.19457 -12.03292 -11.60246 -11.48482 -11.20243 -10.81239 -10.73077 -10.10990 -9.64929 -9.35840 -8.28875 -6.45869 1.43252 1.46568 1.56911 1.66199 2.13505 2.38071 2.65508 2.90198 3.06095 3.11325 3.66658 3.76312 3.85118 3.99050 4.06322 4.15718 4.27737 4.34977 4.38242 4.53237 4.65341 4.68024 4.69751 4.79484 4.87224 4.91712 5.03618 5.04594 5.24790 5.41732 5.48523 5.64904 5.80645 5.80882 5.84654 6.06820 6.14233 6.65258 7.11979 7.24290 7.63404 8.83601 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042034 B = 0.003793 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.973399 B = 7379.424780 C = 7869.834567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.693 3.307 12 O -0.646 6.646 13 N -0.631 5.631 14 C 0.112 3.888 15 C 0.043 3.957 16 N -0.525 5.525 17 C 0.015 3.985 18 C 0.058 3.942 19 O -0.402 6.402 20 C 0.074 3.926 21 C 0.042 3.958 22 H 0.029 0.971 23 C 0.140 3.860 24 H 0.269 0.731 25 H -0.014 1.014 26 H -0.017 1.017 27 H 0.402 0.598 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.024 0.976 32 H 0.114 0.886 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.813 -18.521 0.949 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.395 3.605 12 O -0.529 6.529 13 N -0.369 5.369 14 C -0.011 4.011 15 C -0.085 4.085 16 N -0.251 5.251 17 C -0.112 4.112 18 C -0.018 4.018 19 O -0.320 6.320 20 C -0.004 4.004 21 C -0.068 4.068 22 H 0.047 0.953 23 C 0.017 3.983 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.240 0.760 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.042 0.958 32 H 0.132 0.868 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.847 -18.791 0.646 23.957 hybrid contribution -0.129 1.520 0.818 1.731 sum 14.718 -17.270 1.465 22.738 Atomic orbital electron populations 1.70146 1.08329 1.28620 1.49856 1.26082 0.95783 1.03915 0.93782 0.85122 0.78451 0.76760 0.78654 1.19476 1.21005 1.17837 1.21572 0.94276 0.90366 1.53071 0.89816 1.18426 0.88097 0.83350 0.93900 1.45453 1.10913 1.03749 1.77625 1.16219 0.84733 0.81683 0.77880 1.90820 1.16883 1.84626 1.60601 1.47301 1.06542 1.05288 1.77815 1.21960 0.78062 1.00018 1.01053 1.22571 1.02276 0.87302 0.96362 1.62567 1.04670 1.06043 1.51824 1.22917 1.00709 0.93830 0.93777 1.22900 0.80536 0.95015 1.03349 1.88011 1.19264 1.63892 1.60840 1.22642 0.97242 0.86072 0.94421 1.22538 0.89298 0.97568 0.97402 0.95332 1.21401 0.98988 0.78662 0.99263 0.92204 0.99589 0.99862 0.75976 0.88633 0.89327 0.85971 0.95758 0.86813 0.95096 0.91061 0.86378 0.90463 0.87656 0.90564 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.26 29.54 68.60 2.03 44.29 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.56 -30.51 9.28 25.60 0.24 -30.27 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.29 16.17 5.43 85.63 0.47 16.64 16 10 N -0.72 -32.39 5.46 -482.31 -2.63 -35.02 16 11 C 0.69 30.58 8.31 179.06 1.49 32.07 16 12 O -0.65 -34.72 15.81 -3.99 -0.06 -34.78 16 13 N -0.63 -20.21 3.01 -836.93 -2.52 -22.73 16 14 C 0.11 2.52 6.55 86.30 0.57 3.09 16 15 C 0.04 0.81 5.53 86.30 0.48 1.29 16 16 N -0.53 -9.97 4.71 -869.01 -4.09 -14.06 16 17 C 0.02 0.23 5.56 86.24 0.48 0.71 16 18 C 0.06 0.81 7.01 71.97 0.50 1.31 16 19 O -0.40 -8.16 10.84 -148.98 -1.62 -9.78 16 20 C 0.07 1.41 6.19 72.04 0.45 1.86 16 21 C 0.04 0.98 2.53 44.96 0.11 1.09 16 22 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 23 C 0.14 3.85 5.80 86.29 0.50 4.35 16 24 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 26 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 27 H 0.40 14.96 5.87 -92.71 -0.54 14.42 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 1.97 5.75 -2.39 -0.01 1.95 16 30 H 0.12 1.51 8.07 -2.39 -0.02 1.49 16 31 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.11 1.10 8.09 -2.39 -0.02 1.08 16 33 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.26 8.11 -2.39 -0.02 1.24 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.45 7.04 -2.39 -0.02 2.43 16 39 H 0.09 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -75.64 311.83 -2.37 -78.01 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.50 Total: 17.63 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 5.74 Total: 32.81 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -8.96 Total: -128.18 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.68 Total: -44.56 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -75.64 -2.37 -78.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.797 kcal (2) G-P(sol) polarization free energy of solvation -75.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds