Wall clock time and date at job start Mon Mar 30 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99797 * 2 1 4 4 H 1.48499 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47704 * 300.00682 * 3 2 1 6 6 H 1.48501 * 109.47211 * 60.00703 * 3 2 1 7 7 C 1.37876 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99736 * 359.97438 * 7 2 1 10 10 N 1.46509 * 109.46898 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00031 * 180.02562 * 10 9 7 12 12 O 1.21588 * 119.99738 * 4.97359 * 11 10 9 13 13 N 1.34772 * 119.99865 * 184.98419 * 11 10 9 14 14 C 1.47127 * 121.01474 * 354.78104 * 13 11 10 15 15 C 1.53116 * 108.24362 * 231.88630 * 14 13 11 16 16 N 1.47148 * 109.65437 * 305.55733 * 15 14 13 17 17 C 1.47419 * 109.73752 * 186.21323 * 16 15 14 18 18 C 1.52957 * 109.54238 * 178.88040 * 17 16 15 19 19 O 1.43093 * 109.00473 * 57.30747 * 18 17 16 20 20 C 1.42885 * 113.34402 * 300.34621 * 19 18 17 21 21 C 1.46935 * 111.30308 * 62.77687 * 16 15 14 22 22 H 1.08997 * 109.58829 * 58.88366 * 21 16 15 23 23 C 1.46951 * 121.01300 * 174.81509 * 13 11 10 24 24 H 0.97002 * 120.00260 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47605 * 60.00334 * 9 7 2 26 26 H 1.09000 * 109.47659 * 299.99912 * 9 7 2 27 27 H 0.96993 * 119.99721 * 0.02562 * 10 9 7 28 28 H 1.08997 * 109.70546 * 112.19991 * 14 13 11 29 29 H 1.08999 * 109.74583 * 351.59083 * 14 13 11 30 30 H 1.08999 * 109.43982 * 185.50593 * 15 14 13 31 31 H 1.08993 * 109.44010 * 65.61003 * 15 14 13 32 32 H 1.09004 * 109.59192 * 58.80158 * 17 16 15 33 33 H 1.08994 * 109.41128 * 298.85318 * 17 16 15 34 34 H 1.09001 * 109.57300 * 297.41753 * 18 17 16 35 35 H 1.09007 * 109.56247 * 177.18715 * 18 17 16 36 36 H 1.08998 * 109.42815 * 179.05871 * 20 19 18 37 37 H 1.09002 * 109.42840 * 298.90718 * 20 19 18 38 38 H 1.09000 * 109.56283 * 8.74672 * 23 13 11 39 39 H 1.09007 * 109.56043 * 248.41535 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5622 -5.1068 -0.0928 13 7 2.6255 -5.9062 0.1003 14 6 4.0773 -5.6681 0.0982 15 6 4.7100 -6.5731 -0.9625 16 7 4.3210 -7.9708 -0.7165 17 6 5.0455 -8.8596 -1.6429 18 6 4.6590 -10.3132 -1.3647 19 8 3.2406 -10.4511 -1.4938 20 6 2.5065 -9.6183 -0.5943 21 6 2.8677 -8.1498 -0.8383 22 1 2.5457 -7.8553 -1.8372 23 6 2.1547 -7.2935 0.2157 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4354 -0.0002 28 1 4.4903 -5.9064 1.0784 29 1 4.2789 -4.6241 -0.1417 30 1 5.7953 -6.4848 -0.9142 31 1 4.3653 -6.2693 -1.9509 32 1 6.1195 -8.7366 -1.5026 33 1 4.7830 -8.6045 -2.6695 34 1 4.9615 -10.5843 -0.3532 35 1 5.1560 -10.9667 -2.0817 36 1 1.4384 -9.7611 -0.7579 37 1 2.7545 -9.8869 0.4326 38 1 1.0783 -7.3288 0.0475 39 1 2.3829 -7.6748 1.2110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408365873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:01 Heat of formation + Delta-G solvation = -82.846923 kcal Electronic energy + Delta-G solvation = -21197.444120 eV Core-core repulsion = 17946.296107 eV Total energy + Delta-G solvation = -3251.148014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65924 -40.38991 -37.95112 -36.25841 -35.38712 -34.43692 -33.17633 -31.25253 -29.43126 -27.27727 -26.81467 -24.66313 -24.19590 -23.04534 -21.43540 -20.75569 -19.58140 -18.10812 -17.69062 -17.29802 -16.99889 -16.68282 -16.48582 -16.24270 -15.83951 -15.65465 -15.25408 -14.96867 -14.90914 -14.74170 -14.08928 -13.83787 -13.23953 -13.09036 -12.89274 -12.86061 -12.75035 -12.62351 -12.36517 -12.18974 -12.03108 -11.60008 -11.45643 -11.20009 -10.82654 -10.73092 -10.10917 -9.64895 -9.35639 -8.29070 -6.45911 1.43346 1.45299 1.57805 1.66573 2.13542 2.37963 2.65387 2.90137 3.06036 3.11349 3.66941 3.75753 3.85265 3.99274 4.06343 4.15814 4.27550 4.35073 4.38349 4.53340 4.65411 4.68188 4.69737 4.79608 4.87314 4.91811 5.03713 5.04694 5.24799 5.41852 5.48672 5.64863 5.80385 5.81033 5.84441 6.06838 6.14202 6.65484 7.12041 7.24271 7.63462 8.83622 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042071 B = 0.003792 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.377324 B = 7382.073969 C = 7872.981158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.693 3.307 12 O -0.647 6.647 13 N -0.632 5.632 14 C 0.112 3.888 15 C 0.043 3.957 16 N -0.525 5.525 17 C 0.015 3.985 18 C 0.058 3.942 19 O -0.402 6.402 20 C 0.074 3.926 21 C 0.043 3.957 22 H 0.029 0.971 23 C 0.141 3.859 24 H 0.269 0.731 25 H -0.016 1.016 26 H -0.014 1.014 27 H 0.402 0.598 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.024 0.976 32 H 0.114 0.886 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.823 -18.543 -0.851 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.395 3.605 12 O -0.529 6.529 13 N -0.370 5.370 14 C -0.011 4.011 15 C -0.085 4.085 16 N -0.251 5.251 17 C -0.112 4.112 18 C -0.018 4.018 19 O -0.320 6.320 20 C -0.004 4.004 21 C -0.068 4.068 22 H 0.047 0.953 23 C 0.017 3.983 24 H 0.078 0.922 25 H 0.002 0.998 26 H 0.004 0.996 27 H 0.240 0.760 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.042 0.958 32 H 0.132 0.868 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.860 -18.814 -0.546 23.980 hybrid contribution -0.140 1.522 -0.830 1.739 sum 14.720 -17.292 -1.376 22.750 Atomic orbital electron populations 1.70154 1.08326 1.28550 1.49928 1.26082 0.95789 1.03920 0.93804 0.85074 0.79094 0.77123 0.77675 1.17500 1.20514 1.20379 1.21602 0.94278 0.90350 1.52941 0.89810 1.18433 0.88103 0.83363 0.93905 1.45454 1.10911 1.03751 1.77634 1.16222 0.84731 0.81683 0.77880 1.90820 1.16889 1.84612 1.60610 1.47308 1.06540 1.05401 1.77715 1.21955 0.78060 0.99988 1.01092 1.22567 1.02257 0.87330 0.96359 1.62639 1.04627 1.05907 1.51948 1.22958 1.00684 0.93741 0.93839 1.22890 0.80541 0.95068 1.03330 1.88015 1.19242 1.63615 1.61133 1.22644 0.97226 0.86050 0.94485 1.22606 0.89280 0.97517 0.97374 0.95310 1.21492 0.98982 0.78609 0.99206 0.92212 0.99849 0.99590 0.75982 0.88656 0.89331 0.85987 0.95753 0.86773 0.95067 0.91076 0.86402 0.87664 0.90472 0.90552 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 42.28 29.54 68.60 2.03 44.31 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -30.44 9.28 25.60 0.24 -30.20 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.29 16.15 5.43 85.63 0.47 16.62 16 10 N -0.72 -32.38 5.46 -482.29 -2.63 -35.02 16 11 C 0.69 30.56 8.31 179.06 1.49 32.05 16 12 O -0.65 -34.71 15.81 -3.99 -0.06 -34.77 16 13 N -0.63 -20.21 3.00 -836.11 -2.51 -22.72 16 14 C 0.11 2.52 6.55 86.30 0.57 3.09 16 15 C 0.04 0.81 5.53 86.29 0.48 1.29 16 16 N -0.53 -9.97 4.71 -867.59 -4.09 -14.05 16 17 C 0.02 0.23 5.58 86.19 0.48 0.71 16 18 C 0.06 0.80 7.00 71.97 0.50 1.31 16 19 O -0.40 -8.17 10.85 -148.98 -1.62 -9.78 16 20 C 0.07 1.41 6.19 72.04 0.45 1.85 16 21 C 0.04 0.98 2.55 45.10 0.11 1.10 16 22 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 23 C 0.14 3.85 5.82 86.42 0.50 4.35 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.40 14.96 5.87 -92.71 -0.54 14.42 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 1.97 5.75 -2.39 -0.01 1.95 16 30 H 0.12 1.51 8.07 -2.39 -0.02 1.49 16 31 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 1.10 8.10 -2.38 -0.02 1.08 16 33 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 38 H 0.08 2.45 7.04 -2.39 -0.02 2.43 16 39 H 0.09 2.10 8.11 -2.38 -0.02 2.08 16 Total: -1.00 -75.64 311.91 -2.36 -78.00 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.50 Total: 17.54 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 5.74 Total: 32.83 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -8.95 Total: -128.12 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.68 Total: -44.55 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -75.64 -2.36 -78.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.852 kcal (2) G-P(sol) polarization free energy of solvation -75.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds