Wall clock time and date at job start Mon Mar 30 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99718 * 2 1 4 4 H 1.09004 * 109.55704 * 30.21838 * 3 2 1 5 5 C 1.53188 * 109.56363 * 269.99905 * 3 2 1 6 6 C 1.53092 * 109.23514 * 182.53765 * 5 3 2 7 7 O 1.43023 * 109.37188 * 58.23245 * 6 5 3 8 8 C 1.42048 * 114.31410 * 300.24784 * 7 6 5 9 9 C 1.54554 * 110.26057 * 181.31680 * 8 7 6 10 10 C 1.55019 * 101.53661 * 83.75199 * 9 8 7 11 11 N 1.47484 * 104.89154 * 36.41839 * 10 9 8 12 12 C 1.34767 * 125.66455 * 155.99525 * 11 10 9 13 13 O 1.21688 * 120.00062 * 179.97438 * 12 11 10 14 14 C 1.46378 * 119.99921 * 359.96973 * 12 11 10 15 15 H 1.07999 * 120.00305 * 354.00127 * 14 12 11 16 16 C 1.40054 * 119.99898 * 174.00094 * 14 12 11 17 17 N 1.30669 * 120.00107 * 6.18682 * 16 14 12 18 18 Si 1.86800 * 119.99737 * 186.18020 * 16 14 12 19 19 H 1.48499 * 109.46740 * 94.98980 * 18 16 14 20 20 H 1.48502 * 109.46990 * 214.98536 * 18 16 14 21 21 H 1.48495 * 109.47647 * 334.98646 * 18 16 14 22 22 C 1.47180 * 108.67060 * 335.96905 * 11 10 9 23 23 C 1.52353 * 111.27887 * 58.89946 * 8 7 6 24 24 H 1.09007 * 109.47030 * 59.99743 * 1 2 3 25 25 H 1.08994 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47402 * 299.99886 * 1 2 3 27 27 H 1.08994 * 109.51403 * 62.60369 * 5 3 2 28 28 H 1.09002 * 109.54982 * 302.48548 * 5 3 2 29 29 H 1.09000 * 109.48281 * 298.26240 * 6 5 3 30 30 H 1.09002 * 109.48676 * 178.20466 * 6 5 3 31 31 H 1.09011 * 111.01230 * 325.69310 * 9 8 7 32 32 H 1.08995 * 111.01653 * 201.81771 * 9 8 7 33 33 H 1.08995 * 110.35057 * 155.26828 * 10 9 8 34 34 H 1.08995 * 110.35788 * 277.55950 * 10 9 8 35 35 H 0.97001 * 120.00335 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.90500 * 120.85893 * 22 11 10 37 37 H 1.08999 * 109.90642 * 241.93043 * 22 11 10 38 38 H 1.09002 * 109.50064 * 64.39040 * 23 8 7 39 39 H 1.09000 * 109.50156 * 184.50281 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3477 1.9998 0.5170 5 6 2.2188 1.7741 -1.4434 6 6 2.8994 3.1454 -1.4351 7 8 4.1454 3.0525 -0.7393 8 6 4.0305 2.6311 0.6124 9 6 5.4230 2.5950 1.2820 10 6 5.6005 4.0748 1.7082 11 7 4.2533 4.5164 2.1147 12 6 3.9804 5.5297 2.9603 13 8 2.8255 5.8073 3.2247 14 6 5.0733 6.2964 3.5606 15 1 6.0972 5.9908 3.4039 16 6 4.7911 7.4265 4.3384 17 7 3.5531 7.7272 4.6288 18 14 6.1846 8.5036 4.9608 19 1 6.3903 9.6372 4.0238 20 1 5.8407 9.0296 6.3062 21 1 7.4306 7.7003 5.0471 22 6 3.2565 3.6671 1.4431 23 6 3.3678 1.2628 0.7105 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.2540 1.8495 -1.9448 28 1 2.8487 1.0584 -1.9719 29 1 2.2555 3.8677 -0.9333 30 1 3.0787 3.4686 -2.4606 31 1 6.1922 2.2988 0.5686 32 1 5.4224 1.9357 2.1499 33 1 6.2925 4.1472 2.5472 34 1 5.9577 4.6710 0.8686 35 1 3.3577 8.5097 5.1678 36 1 2.6394 3.1611 2.1856 37 1 2.6291 4.2754 0.7917 38 1 4.0037 0.5156 0.2356 39 1 3.2218 1.0036 1.7592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409434177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:06 Heat of formation + Delta-G solvation = -125.320201 kcal Electronic energy + Delta-G solvation = -21692.086970 eV Core-core repulsion = 18406.804426 eV Total energy + Delta-G solvation = -3285.282544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42276 -38.05178 -37.01235 -35.10517 -32.58712 -32.51111 -31.31290 -28.86119 -27.74864 -26.64678 -25.27246 -23.87903 -22.85725 -21.08600 -19.84416 -18.71125 -17.08634 -16.72800 -16.05251 -15.92214 -15.55144 -15.30436 -14.70859 -14.45499 -14.30307 -13.97483 -13.43667 -13.29128 -13.17396 -12.60831 -12.24706 -11.98124 -11.87853 -11.64418 -11.42235 -11.23442 -11.09787 -11.02971 -11.00453 -10.85437 -10.73554 -10.37210 -10.17434 -10.02212 -9.61375 -9.37142 -8.85318 -7.64808 -7.19861 -6.21545 -4.64297 3.13925 3.20967 3.24585 3.56719 3.81116 4.07801 4.52332 4.55589 4.62060 4.71692 4.93610 4.97729 5.02959 5.16447 5.21039 5.23345 5.29151 5.42754 5.53776 5.60902 5.68364 5.74194 5.77527 5.79418 5.94252 6.01249 6.09293 6.14493 6.28262 6.34457 6.50412 6.67796 7.06919 7.35550 7.42615 7.43986 8.10228 8.40642 9.01479 9.48315 10.56403 10.75203 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032556 B = 0.004703 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.843762 B = 5951.620804 C = 6291.382409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.085 3.915 4 H 0.067 0.933 5 C -0.174 4.174 6 C 0.059 3.941 7 O -0.360 6.360 8 C 0.108 3.892 9 C -0.119 4.119 10 C 0.121 3.879 11 N -0.642 5.642 12 C 0.571 3.429 13 O -0.578 6.578 14 C -0.539 4.539 15 H 0.071 0.929 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.909 3.091 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.264 1.264 22 C 0.097 3.903 23 C -0.129 4.129 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.268 0.732 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 -12.395 -10.115 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.027 3.973 4 H 0.085 0.915 5 C -0.212 4.212 6 C -0.018 4.018 7 O -0.279 6.279 8 C 0.068 3.932 9 C -0.157 4.157 10 C -0.003 4.003 11 N -0.382 5.382 12 C 0.378 3.622 13 O -0.461 6.461 14 C -0.575 4.575 15 H 0.089 0.911 16 C -0.133 4.133 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.028 4.028 23 C -0.167 4.167 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.112 -12.153 -9.879 15.701 hybrid contribution 0.081 0.658 0.256 0.711 sum -1.031 -11.495 -9.623 15.026 Atomic orbital electron populations 1.22786 0.81263 1.02530 1.00118 1.87898 1.19531 1.27829 1.95059 1.22240 0.95107 0.84665 0.95249 0.91536 1.22701 1.01811 0.98897 0.97828 1.22584 0.86474 0.95211 0.97507 1.87823 1.29178 1.87889 1.22987 1.21915 0.96943 0.91775 0.82594 1.22795 0.94592 0.98598 0.99714 1.21924 0.87481 0.91776 0.99154 1.48721 1.04050 1.35827 1.49624 1.18063 0.89947 0.77214 0.76963 1.90602 1.22617 1.68688 1.64197 1.20894 0.92724 1.11433 1.32480 0.91087 1.25732 0.95920 0.97304 0.94299 1.70029 1.19108 1.22674 1.27924 0.86342 0.81718 0.80284 0.78350 1.19761 1.20436 1.18784 1.22063 0.93031 0.92417 0.95277 1.22079 0.95127 0.97580 1.01923 0.94182 0.89759 0.93816 0.90993 0.90267 0.92474 0.88515 0.89721 0.89639 0.90992 0.92888 0.92087 0.92632 0.92831 0.90055 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.38 -4.89 10.36 -35.23 -0.36 -5.26 16 3 C 0.09 1.09 2.51 -26.48 -0.07 1.03 16 4 H 0.07 0.90 7.31 -51.93 -0.38 0.52 16 5 C -0.17 -2.01 5.74 -26.59 -0.15 -2.16 16 6 C 0.06 0.76 6.61 37.21 0.25 1.01 16 7 O -0.36 -5.64 10.26 -35.23 -0.36 -6.00 16 8 C 0.11 1.70 0.79 -89.77 -0.07 1.62 16 9 C -0.12 -1.79 6.20 -24.85 -0.15 -1.94 16 10 C 0.12 2.30 6.56 -2.44 -0.02 2.29 16 11 N -0.64 -15.21 3.33 -172.33 -0.57 -15.79 16 12 C 0.57 16.77 7.78 -12.99 -0.10 16.67 16 13 O -0.58 -19.21 15.37 5.20 0.08 -19.13 16 14 C -0.54 -15.41 8.99 -35.63 -0.32 -15.73 16 15 H 0.07 1.86 6.61 -52.49 -0.35 1.52 16 16 C 0.09 2.45 5.49 -17.37 -0.10 2.35 16 17 N -0.77 -23.22 11.85 55.55 0.66 -22.56 16 18 Si 0.91 20.23 29.56 -169.99 -5.03 15.20 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 22 C 0.10 1.94 5.32 -3.31 -0.02 1.92 16 23 C -0.13 -1.75 4.38 -26.91 -0.12 -1.86 16 24 H 0.04 0.34 7.95 -51.92 -0.41 -0.07 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.80 6.34 -51.93 -0.33 0.47 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.09 1.18 8.01 -51.93 -0.42 0.77 16 33 H 0.07 1.36 7.08 -51.93 -0.37 0.99 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 36 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 37 H 0.05 1.12 6.13 -51.93 -0.32 0.80 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -35.21 311.58 -6.55 -41.76 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.89 Total: 0.49 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 0.23 Total: 6.58 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.08 Total: -38.35 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.65 Total: -30.38 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.21 -6.55 -41.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409434177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.560 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds