Wall clock time and date at job start Mon Mar 30 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99718 * 2 1 4 4 H 1.09004 * 109.55704 * 30.21838 * 3 2 1 5 5 C 1.53188 * 109.56363 * 269.99905 * 3 2 1 6 6 C 1.53092 * 109.23514 * 182.53765 * 5 3 2 7 7 O 1.43023 * 109.37188 * 58.23245 * 6 5 3 8 8 C 1.42048 * 114.31410 * 300.24784 * 7 6 5 9 9 C 1.54554 * 110.26057 * 181.31680 * 8 7 6 10 10 C 1.55019 * 101.53661 * 83.75199 * 9 8 7 11 11 N 1.47484 * 104.89154 * 36.41839 * 10 9 8 12 12 C 1.34767 * 125.66455 * 155.99525 * 11 10 9 13 13 O 1.21688 * 120.00062 * 179.97438 * 12 11 10 14 14 C 1.46378 * 119.99921 * 359.96973 * 12 11 10 15 15 H 1.07999 * 120.00305 * 354.00127 * 14 12 11 16 16 C 1.40054 * 119.99898 * 174.00094 * 14 12 11 17 17 N 1.30669 * 120.00107 * 6.18682 * 16 14 12 18 18 Si 1.86800 * 119.99737 * 186.18020 * 16 14 12 19 19 H 1.48499 * 109.46740 * 94.98980 * 18 16 14 20 20 H 1.48502 * 109.46990 * 214.98536 * 18 16 14 21 21 H 1.48495 * 109.47647 * 334.98646 * 18 16 14 22 22 C 1.47180 * 108.67060 * 335.96905 * 11 10 9 23 23 C 1.52353 * 111.27887 * 58.89946 * 8 7 6 24 24 H 1.09007 * 109.47030 * 59.99743 * 1 2 3 25 25 H 1.08994 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47402 * 299.99886 * 1 2 3 27 27 H 1.08994 * 109.51403 * 62.60369 * 5 3 2 28 28 H 1.09002 * 109.54982 * 302.48548 * 5 3 2 29 29 H 1.09000 * 109.48281 * 298.26240 * 6 5 3 30 30 H 1.09002 * 109.48676 * 178.20466 * 6 5 3 31 31 H 1.09011 * 111.01230 * 325.69310 * 9 8 7 32 32 H 1.08995 * 111.01653 * 201.81771 * 9 8 7 33 33 H 1.08995 * 110.35057 * 155.26828 * 10 9 8 34 34 H 1.08995 * 110.35788 * 277.55950 * 10 9 8 35 35 H 0.97001 * 120.00335 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.90500 * 120.85893 * 22 11 10 37 37 H 1.08999 * 109.90642 * 241.93043 * 22 11 10 38 38 H 1.09002 * 109.50064 * 64.39040 * 23 8 7 39 39 H 1.09000 * 109.50156 * 184.50281 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3477 1.9998 0.5170 5 6 2.2188 1.7741 -1.4434 6 6 2.8994 3.1454 -1.4351 7 8 4.1454 3.0525 -0.7393 8 6 4.0305 2.6311 0.6124 9 6 5.4230 2.5950 1.2820 10 6 5.6005 4.0748 1.7082 11 7 4.2533 4.5164 2.1147 12 6 3.9804 5.5297 2.9603 13 8 2.8255 5.8073 3.2247 14 6 5.0733 6.2964 3.5606 15 1 6.0972 5.9908 3.4039 16 6 4.7911 7.4265 4.3384 17 7 3.5531 7.7272 4.6288 18 14 6.1846 8.5036 4.9608 19 1 6.3903 9.6372 4.0238 20 1 5.8407 9.0296 6.3062 21 1 7.4306 7.7003 5.0471 22 6 3.2565 3.6671 1.4431 23 6 3.3678 1.2628 0.7105 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.2540 1.8495 -1.9448 28 1 2.8487 1.0584 -1.9719 29 1 2.2555 3.8677 -0.9333 30 1 3.0787 3.4686 -2.4606 31 1 6.1922 2.2988 0.5686 32 1 5.4224 1.9357 2.1499 33 1 6.2925 4.1472 2.5472 34 1 5.9577 4.6710 0.8686 35 1 3.3577 8.5097 5.1678 36 1 2.6394 3.1611 2.1856 37 1 2.6291 4.2754 0.7917 38 1 4.0037 0.5156 0.2356 39 1 3.2218 1.0036 1.7592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409434177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:06 Heat of formation + Delta-G solvation = -151.582391 kcal Electronic energy + Delta-G solvation = -21693.225784 eV Core-core repulsion = 18406.804426 eV Total energy + Delta-G solvation = -3286.421358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69018 -39.48950 -38.50504 -36.82589 -34.68443 -33.67015 -32.75971 -30.31035 -29.36734 -27.94908 -26.79064 -24.97036 -24.33854 -22.33426 -21.60183 -20.13501 -18.80206 -17.89773 -17.72201 -17.23134 -17.07476 -16.30662 -16.22550 -15.92479 -15.70557 -15.36186 -15.20184 -14.47774 -14.20159 -14.15027 -13.77183 -13.52065 -13.31787 -13.03298 -12.83262 -12.78762 -12.70079 -12.47897 -12.29862 -12.24277 -12.10678 -11.99123 -11.86318 -11.21224 -10.95838 -10.61806 -10.55376 -9.91791 -9.16609 -8.33850 -6.87951 1.38953 1.40309 1.56742 2.21878 2.40911 2.59767 2.65471 2.83432 3.43114 3.54723 3.61643 3.69915 3.85900 3.92196 4.05177 4.18698 4.29234 4.38215 4.43391 4.48316 4.52695 4.61893 4.67265 4.74638 4.79974 4.84384 4.86131 4.91954 5.00929 5.06659 5.15465 5.21625 5.31408 5.57595 6.00397 6.15336 6.23020 6.35717 6.83443 7.42051 8.40241 8.62993 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032556 B = 0.004703 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.843762 B = 5951.620804 C = 6291.382409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.083 3.917 4 H 0.050 0.950 5 C -0.164 4.164 6 C 0.053 3.947 7 O -0.370 6.370 8 C 0.121 3.879 9 C -0.106 4.106 10 C 0.113 3.887 11 N -0.650 5.650 12 C 0.550 3.450 13 O -0.635 6.635 14 C -0.564 4.564 15 H 0.090 0.910 16 C 0.028 3.972 17 N -0.823 5.823 18 Si 1.000 3.000 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.245 1.245 22 C 0.094 3.906 23 C -0.124 4.124 24 H 0.052 0.948 25 H 0.104 0.896 26 H 0.038 0.962 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.275 0.725 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.100 0.900 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -13.588 -11.195 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.025 3.975 4 H 0.069 0.931 5 C -0.202 4.202 6 C -0.023 4.023 7 O -0.289 6.289 8 C 0.081 3.919 9 C -0.144 4.144 10 C -0.010 4.010 11 N -0.388 5.388 12 C 0.357 3.643 13 O -0.523 6.523 14 C -0.600 4.600 15 H 0.108 0.892 16 C -0.187 4.187 17 N -0.452 5.452 18 Si 0.819 3.181 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.168 1.168 22 C -0.030 4.030 23 C -0.162 4.162 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.118 0.882 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.928 -13.404 -11.005 17.367 hybrid contribution -0.635 0.992 0.533 1.292 sum 0.294 -12.412 -10.472 16.242 Atomic orbital electron populations 1.22988 0.79809 1.04020 1.00518 1.87864 1.21128 1.27350 1.95178 1.22196 0.94544 0.84737 0.96000 0.93148 1.22612 1.02745 0.97798 0.97012 1.22783 0.85474 0.95904 0.98144 1.87803 1.30550 1.88051 1.22513 1.21769 0.96751 0.91244 0.82183 1.22818 0.94918 0.95682 1.00938 1.22167 0.85034 0.94631 0.99145 1.48559 1.07023 1.34830 1.48411 1.18489 0.89535 0.78420 0.77815 1.90540 1.24483 1.70794 1.66480 1.21401 0.93409 1.12215 1.33015 0.89206 1.27044 0.99186 0.98641 0.93825 1.70198 1.22376 1.23723 1.28933 0.84977 0.77638 0.77747 0.77769 1.18789 1.19559 1.16818 1.22234 0.92851 0.92835 0.95082 1.22007 0.95755 0.96216 1.02177 0.92975 0.87759 0.94284 0.89217 0.89334 0.94401 0.86077 0.86476 0.88128 0.90937 0.92808 0.91475 0.93979 0.94625 0.88167 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.63 16 2 O -0.40 -9.38 10.36 -148.98 -1.54 -10.93 16 3 C 0.08 2.04 2.51 30.76 0.08 2.12 16 4 H 0.05 1.38 7.31 -2.39 -0.02 1.36 16 5 C -0.16 -3.42 5.74 30.69 0.18 -3.25 16 6 C 0.05 1.31 6.61 72.01 0.48 1.78 16 7 O -0.37 -10.98 10.26 -148.97 -1.53 -12.51 16 8 C 0.12 3.67 0.79 -10.24 -0.01 3.66 16 9 C -0.11 -2.94 6.20 31.81 0.20 -2.74 16 10 C 0.11 4.23 6.56 86.88 0.57 4.80 16 11 N -0.65 -31.72 3.33 -817.34 -2.72 -34.44 16 12 C 0.55 33.69 7.78 86.36 0.67 34.36 16 13 O -0.64 -44.66 15.37 -4.31 -0.07 -44.73 16 14 C -0.56 -32.90 8.99 24.83 0.22 -32.68 16 15 H 0.09 4.70 6.61 -2.91 -0.02 4.68 16 16 C 0.03 1.59 5.49 85.31 0.47 2.06 16 17 N -0.82 -51.40 11.85 21.84 0.26 -51.14 16 18 Si 1.00 41.41 29.56 68.60 2.03 43.44 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 22 C 0.09 3.90 5.32 86.49 0.46 4.36 16 23 C -0.12 -3.14 4.38 30.48 0.13 -3.00 16 24 H 0.05 0.80 7.95 -2.38 -0.02 0.78 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 0.72 8.09 -2.39 -0.02 0.71 16 27 H 0.09 1.56 7.94 -2.39 -0.02 1.54 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.08 6.34 -2.39 -0.02 1.06 16 30 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.10 2.51 8.01 -2.39 -0.02 2.49 16 33 H 0.07 2.68 7.08 -2.39 -0.02 2.66 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.28 15.49 8.29 -92.71 -0.77 14.72 16 36 H 0.04 1.82 7.70 -2.39 -0.02 1.81 16 37 H 0.04 1.58 6.13 -2.39 -0.01 1.57 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.08 2.07 8.01 -2.39 -0.02 2.05 16 Total: -1.00 -80.10 311.58 2.14 -77.96 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.04 Total: 19.24 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 4.67 Total: 13.12 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.47 Total: -85.58 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: -3.14 Total: -68.17 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -80.10 2.14 -77.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409434177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.623 kcal (2) G-P(sol) polarization free energy of solvation -80.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds