Wall clock time and date at job start Mon Mar 30 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47240 * 2 1 4 4 O 1.21276 * 120.00323 * 0.02562 * 3 2 1 5 5 N 1.34785 * 119.99867 * 179.97438 * 3 2 1 6 6 C 1.47235 * 126.20992 * 180.02562 * 5 3 2 7 7 C 1.54157 * 105.00122 * 197.13999 * 6 5 3 8 8 N 1.47408 * 104.05800 * 331.95567 * 7 6 5 9 9 C 1.34777 * 126.77651 * 208.23586 * 8 7 6 10 10 O 1.21588 * 119.99459 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00595 * 0.07197 * 9 8 7 12 12 C 1.46508 * 119.99941 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46757 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.46748 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99956 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99565 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00145 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46952 * 60.00190 * 18 16 14 20 20 H 1.48504 * 109.47097 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47029 * 299.99817 * 18 16 14 22 22 C 1.46827 * 126.21336 * 359.97438 * 5 3 2 23 23 H 1.09004 * 109.46773 * 299.99671 * 1 2 3 24 24 H 1.08997 * 109.47371 * 59.99756 * 1 2 3 25 25 H 1.09003 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46773 * 240.00329 * 2 1 3 27 27 H 1.08996 * 109.47338 * 120.00797 * 2 1 3 28 28 H 1.08994 * 110.33699 * 316.01963 * 6 5 3 29 29 H 1.08997 * 110.33484 * 78.15856 * 6 5 3 30 30 H 1.09003 * 110.50512 * 90.66252 * 7 6 5 31 31 H 1.09004 * 110.50527 * 213.21725 * 7 6 5 32 32 H 0.96997 * 119.99811 * 0.02562 * 11 9 8 33 33 H 1.08997 * 109.47078 * 300.00048 * 12 11 9 34 34 H 1.09001 * 109.46504 * 60.00282 * 12 11 9 35 35 H 1.08994 * 109.47334 * 300.00604 * 13 12 11 36 36 H 1.09004 * 109.47051 * 60.00460 * 13 12 11 37 37 H 0.97002 * 119.99346 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.67805 * 299.96035 * 22 5 3 39 39 H 1.09004 * 109.67802 * 60.46325 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.9956 2.9939 0.0011 7 6 5.4510 2.7369 -0.4373 8 7 5.7204 1.3573 0.0066 9 6 6.9165 0.8387 0.3483 10 8 6.9978 -0.3229 0.6983 11 7 8.0224 1.6077 0.3028 12 6 9.3225 1.0439 0.6747 13 6 10.4026 2.1188 0.5372 14 6 11.7400 1.5387 0.9191 15 1 11.8123 0.5065 1.2286 16 6 12.8712 2.3257 0.8735 17 7 12.7829 3.5827 0.4972 18 14 14.5291 1.6064 1.3463 19 1 14.8484 0.4671 0.4490 20 1 15.5775 2.6497 1.2129 21 1 14.4795 1.1307 2.7521 22 6 4.4267 0.6608 0.0017 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.4972 3.6542 -0.7085 29 1 3.9704 3.4258 1.0015 30 1 5.5430 2.8155 -1.5206 31 1 6.1270 3.4368 0.0541 32 1 7.9574 2.5346 0.0245 33 1 9.2858 0.6962 1.7071 34 1 9.5567 0.2066 0.0173 35 1 10.4393 2.4670 -0.4950 36 1 10.1680 2.9558 1.1948 37 1 13.5788 4.1363 0.4647 38 1 4.3423 0.0365 0.8912 39 1 4.3477 0.0402 -0.8910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425505643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:33 Heat of formation + Delta-G solvation = -58.746367 kcal Electronic energy + Delta-G solvation = -20189.328602 eV Core-core repulsion = 16939.225667 eV Total energy + Delta-G solvation = -3250.102935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77589 -39.48329 -37.56509 -34.95227 -33.64631 -33.05759 -32.69429 -30.22935 -29.64016 -26.35908 -25.03354 -24.15244 -22.77044 -21.11955 -20.09508 -19.76633 -18.24095 -17.29047 -16.78018 -16.46058 -15.85892 -15.62903 -15.38390 -14.76306 -14.54857 -13.99105 -13.78950 -13.70067 -13.40501 -13.07069 -12.91214 -12.69309 -12.44714 -12.30039 -12.13443 -11.98632 -11.49205 -11.24413 -11.05435 -10.68669 -10.38548 -10.29359 -10.10834 -9.63330 -9.33429 -9.27341 -8.91738 -8.53224 -8.35022 -6.12713 -4.15710 2.15971 2.27786 2.85044 3.29312 3.33335 3.33404 3.36575 3.97135 4.18219 4.36700 4.41940 4.65889 4.71272 4.73795 4.83037 5.06263 5.18720 5.22278 5.24523 5.31410 5.47093 5.48922 5.58225 5.62049 5.89600 6.04379 6.22916 6.31246 6.68482 6.82953 6.85612 7.22077 7.49152 7.56919 7.76543 7.85589 8.11274 8.25522 8.74478 8.90222 9.49269 10.98875 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.055030 B = 0.002906 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.694954 B = 9631.929257 C =10060.490912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.538 3.462 4 O -0.535 6.535 5 N -0.631 5.631 6 C 0.096 3.904 7 C 0.090 3.910 8 N -0.650 5.650 9 C 0.728 3.272 10 O -0.587 6.587 11 N -0.731 5.731 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.355 3.645 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.394 0.606 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.428 -2.964 -2.933 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.328 3.672 4 O -0.411 6.411 5 N -0.368 5.368 6 C -0.027 4.027 7 C -0.034 4.034 8 N -0.392 5.392 9 C 0.430 3.570 10 O -0.464 6.464 11 N -0.384 5.384 12 C 0.017 3.983 13 C -0.024 4.024 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C 0.145 3.855 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.228 0.772 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.623 -3.249 -2.659 21.046 hybrid contribution 1.090 0.297 0.076 1.132 sum -19.533 -2.951 -2.583 19.923 Atomic orbital electron populations 1.21544 0.92721 1.01827 1.03368 1.21681 0.98736 0.92962 1.04850 1.20414 0.79223 0.92266 0.75323 1.90722 1.53711 1.46856 1.49842 1.48668 1.05495 1.08211 1.74446 1.22343 0.91600 0.85874 1.02852 1.22518 0.95607 0.84474 1.00816 1.47576 1.06040 1.12746 1.72820 1.15325 0.78723 0.84705 0.78294 1.90927 1.84684 1.15892 1.54939 1.45560 1.07098 1.14380 1.71405 1.21686 0.79058 0.98240 0.99324 1.19324 0.91883 0.93343 0.97853 1.20994 0.91687 0.97640 1.45784 0.92217 1.24996 0.99394 0.94829 0.95050 1.69946 1.29612 1.06334 1.47412 0.86555 0.82973 0.78709 0.79200 1.20085 1.21250 1.20086 1.21018 0.75495 0.86654 1.02334 0.91938 0.91938 0.91812 0.88552 0.88509 0.89059 0.90487 0.90222 0.88691 0.77204 0.92521 0.92481 0.95925 0.95940 0.92758 0.90081 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.15 0.34 -0.62 16 2 C -0.14 -1.02 5.65 -27.89 -0.16 -1.17 16 3 C 0.54 5.67 7.86 -10.98 -0.09 5.59 16 4 O -0.54 -7.44 16.34 5.56 0.09 -7.35 16 5 N -0.63 -6.33 3.35 -175.59 -0.59 -6.92 16 6 C 0.10 0.88 7.10 -3.04 -0.02 0.86 16 7 C 0.09 0.82 6.86 -2.94 -0.02 0.80 16 8 N -0.65 -8.12 3.33 -181.16 -0.60 -8.73 16 9 C 0.73 12.18 8.53 -86.92 -0.74 11.44 16 10 O -0.59 -11.94 16.73 5.29 0.09 -11.85 16 11 N -0.73 -12.36 5.52 -65.22 -0.36 -12.72 16 12 C 0.14 2.87 5.61 -4.04 -0.02 2.85 16 13 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 14 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.35 3.71 6.66 -62.93 -0.42 3.29 16 23 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 24 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.78 7.22 -51.93 -0.37 0.41 16 32 H 0.39 5.74 6.98 -40.82 -0.29 5.46 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -33.35 330.69 -8.47 -41.82 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.12 Total: -0.57 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -1.68 Total: 10.25 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.82 Total: -53.31 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.18 Total: -19.20 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.35 -8.47 -41.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425505643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.928 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds