Wall clock time and date at job start Mon Mar 30 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47240 * 2 1 4 4 O 1.21276 * 120.00323 * 0.02562 * 3 2 1 5 5 N 1.34785 * 119.99867 * 179.97438 * 3 2 1 6 6 C 1.47235 * 126.20992 * 180.02562 * 5 3 2 7 7 C 1.54157 * 105.00122 * 197.13999 * 6 5 3 8 8 N 1.47408 * 104.05800 * 331.95567 * 7 6 5 9 9 C 1.34777 * 126.77651 * 208.23586 * 8 7 6 10 10 O 1.21588 * 119.99459 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00595 * 0.07197 * 9 8 7 12 12 C 1.46508 * 119.99941 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46757 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.46748 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99956 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99565 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00145 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46952 * 60.00190 * 18 16 14 20 20 H 1.48504 * 109.47097 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47029 * 299.99817 * 18 16 14 22 22 C 1.46827 * 126.21336 * 359.97438 * 5 3 2 23 23 H 1.09004 * 109.46773 * 299.99671 * 1 2 3 24 24 H 1.08997 * 109.47371 * 59.99756 * 1 2 3 25 25 H 1.09003 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46773 * 240.00329 * 2 1 3 27 27 H 1.08996 * 109.47338 * 120.00797 * 2 1 3 28 28 H 1.08994 * 110.33699 * 316.01963 * 6 5 3 29 29 H 1.08997 * 110.33484 * 78.15856 * 6 5 3 30 30 H 1.09003 * 110.50512 * 90.66252 * 7 6 5 31 31 H 1.09004 * 110.50527 * 213.21725 * 7 6 5 32 32 H 0.96997 * 119.99811 * 0.02562 * 11 9 8 33 33 H 1.08997 * 109.47078 * 300.00048 * 12 11 9 34 34 H 1.09001 * 109.46504 * 60.00282 * 12 11 9 35 35 H 1.08994 * 109.47334 * 300.00604 * 13 12 11 36 36 H 1.09004 * 109.47051 * 60.00460 * 13 12 11 37 37 H 0.97002 * 119.99346 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.67805 * 299.96035 * 22 5 3 39 39 H 1.09004 * 109.67802 * 60.46325 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.9956 2.9939 0.0011 7 6 5.4510 2.7369 -0.4373 8 7 5.7204 1.3573 0.0066 9 6 6.9165 0.8387 0.3483 10 8 6.9978 -0.3229 0.6983 11 7 8.0224 1.6077 0.3028 12 6 9.3225 1.0439 0.6747 13 6 10.4026 2.1188 0.5372 14 6 11.7400 1.5387 0.9191 15 1 11.8123 0.5065 1.2286 16 6 12.8712 2.3257 0.8735 17 7 12.7829 3.5827 0.4972 18 14 14.5291 1.6064 1.3463 19 1 14.8484 0.4671 0.4490 20 1 15.5775 2.6497 1.2129 21 1 14.4795 1.1307 2.7521 22 6 4.4267 0.6608 0.0017 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.4972 3.6542 -0.7085 29 1 3.9704 3.4258 1.0015 30 1 5.5430 2.8155 -1.5206 31 1 6.1270 3.4368 0.0541 32 1 7.9574 2.5346 0.0245 33 1 9.2858 0.6962 1.7071 34 1 9.5567 0.2066 0.0173 35 1 10.4393 2.4670 -0.4950 36 1 10.1680 2.9558 1.1948 37 1 13.5788 4.1363 0.4647 38 1 4.3423 0.0365 0.8912 39 1 4.3477 0.0402 -0.8910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425505643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:32 Heat of formation + Delta-G solvation = -81.426771 kcal Electronic energy + Delta-G solvation = -20190.312098 eV Core-core repulsion = 16939.225667 eV Total energy + Delta-G solvation = -3251.086431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.75571 -40.59043 -38.60567 -36.59815 -34.96431 -34.36065 -33.66702 -31.41775 -31.03350 -27.59970 -26.21233 -25.40987 -23.52170 -22.90798 -21.35975 -20.56254 -19.35316 -18.47690 -18.14515 -17.66057 -17.06911 -16.70479 -16.49387 -16.35500 -15.82509 -15.21431 -15.07199 -14.77316 -14.34406 -14.25128 -14.10221 -13.86444 -13.38584 -13.20802 -13.19597 -12.92987 -12.87580 -12.59406 -12.52481 -12.22104 -12.05069 -11.69858 -11.51574 -11.29503 -11.08291 -10.58655 -10.32551 -10.01377 -9.61183 -8.22467 -6.32345 1.13496 1.44272 1.45881 1.47671 1.53890 1.92557 2.04935 2.42098 2.95372 3.12814 3.28161 3.61061 3.88836 4.01600 4.17742 4.19186 4.32315 4.40059 4.47318 4.54043 4.55068 4.68597 4.74179 4.84298 4.88240 4.99240 5.05207 5.20238 5.27589 5.35813 5.50045 5.61159 5.74548 5.83399 6.17993 6.31670 6.80571 6.84538 6.98160 7.36879 7.43624 8.89140 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.055030 B = 0.002906 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.694954 B = 9631.929257 C =10060.490912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.534 3.466 4 O -0.574 6.574 5 N -0.630 5.630 6 C 0.095 3.905 7 C 0.090 3.910 8 N -0.647 5.647 9 C 0.730 3.270 10 O -0.625 6.625 11 N -0.727 5.727 12 C 0.161 3.839 13 C 0.024 3.976 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.355 3.645 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.406 0.594 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.081 0.919 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.644 -3.714 -3.212 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.178 4.178 3 C 0.326 3.674 4 O -0.453 6.453 5 N -0.366 5.366 6 C -0.028 4.028 7 C -0.033 4.033 8 N -0.387 5.387 9 C 0.432 3.568 10 O -0.506 6.506 11 N -0.381 5.381 12 C 0.037 3.963 13 C -0.014 4.014 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.194 1.194 22 C 0.146 3.854 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.242 0.758 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.878 -3.975 -2.956 21.458 hybrid contribution 1.078 0.573 0.148 1.230 sum -19.800 -3.402 -2.809 20.286 Atomic orbital electron populations 1.21543 0.92799 1.02883 1.02122 1.21773 0.98621 0.90862 1.06570 1.21062 0.78862 0.93265 0.74237 1.90707 1.54517 1.48324 1.51753 1.48719 1.05435 1.08436 1.74022 1.22396 0.91467 0.85830 1.03067 1.22739 0.95765 0.82779 1.01986 1.47439 1.05427 1.14321 1.71526 1.15264 0.79478 0.84068 0.78023 1.90899 1.85526 1.17566 1.56622 1.45217 1.06219 1.15007 1.71705 1.21147 0.79888 0.96704 0.98592 1.19126 0.92172 0.93633 0.96439 1.21438 0.93270 0.97924 1.45788 0.92138 1.25851 1.03174 0.95179 0.94937 1.70050 1.30702 1.07517 1.48337 0.85521 0.78423 0.78111 0.79135 1.19316 1.20785 1.19376 1.21141 0.74522 0.86488 1.03277 0.93370 0.93039 0.89546 0.86377 0.86957 0.88228 0.90682 0.88419 0.87667 0.75781 0.93483 0.93304 0.97208 0.97301 0.92587 0.90149 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.20 71.98 0.66 -1.07 16 2 C -0.14 -1.69 5.65 29.85 0.17 -1.52 16 3 C 0.53 10.55 7.86 87.65 0.69 11.24 16 4 O -0.57 -15.70 16.34 -3.02 -0.05 -15.75 16 5 N -0.63 -11.53 3.35 -827.84 -2.77 -14.30 16 6 C 0.10 1.58 7.10 86.63 0.61 2.20 16 7 C 0.09 1.46 6.86 86.60 0.59 2.05 16 8 N -0.65 -15.01 3.33 -845.33 -2.82 -17.83 16 9 C 0.73 23.62 8.53 179.06 1.53 25.15 16 10 O -0.63 -25.04 16.73 -3.99 -0.07 -25.10 16 11 N -0.73 -24.02 5.52 -478.52 -2.64 -26.66 16 12 C 0.16 6.61 5.61 86.38 0.48 7.09 16 13 C 0.02 1.16 5.09 29.85 0.15 1.31 16 14 C -0.55 -29.67 9.11 25.60 0.23 -29.43 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 18 Si 0.96 42.77 29.54 68.60 2.03 44.80 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.35 6.67 6.66 170.67 1.14 7.80 16 23 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 24 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.52 7.22 -2.39 -0.02 1.50 16 32 H 0.41 11.39 6.98 -92.71 -0.65 10.74 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -71.26 330.69 1.08 -70.19 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.39 Total: 11.97 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 6.72 Total: 25.70 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -7.95 Total: -111.80 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.12 Total: -40.86 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.26 1.08 -70.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425505643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.241 kcal (2) G-P(sol) polarization free energy of solvation -71.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds