Wall clock time and date at job start Mon Mar 30 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47134 * 2 1 4 4 C 1.34228 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00315 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99969 * 179.97438 * 4 3 2 7 7 H 1.08998 * 110.36477 * 24.47002 * 6 4 3 8 8 C 1.54663 * 110.40771 * 146.81818 * 6 4 3 9 9 N 1.48658 * 104.65283 * 142.60097 * 8 6 4 10 10 C 1.46901 * 111.00043 * 201.49198 * 9 8 6 11 11 C 1.50703 * 109.46695 * 285.65262 * 10 9 8 12 12 H 1.07998 * 119.99801 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00006 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99928 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99995 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46951 * 90.00109 * 15 13 11 17 17 H 1.48494 * 109.47033 * 210.00067 * 15 13 11 18 18 H 1.48500 * 109.46918 * 330.00443 * 15 13 11 19 19 C 1.48825 * 104.41452 * 321.15708 * 9 8 6 20 20 C 1.53330 * 104.41030 * 38.38754 * 19 9 8 21 21 C 1.52892 * 115.78796 * 206.80880 * 20 19 9 22 22 O 1.44399 * 85.14491 * 220.75987 * 21 20 19 23 23 C 1.44409 * 93.54503 * 23.37119 * 22 21 20 24 24 H 1.08999 * 109.47338 * 300.00276 * 1 2 3 25 25 H 1.08998 * 109.46795 * 60.00337 * 1 2 3 26 26 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47338 * 239.99724 * 2 1 3 28 28 H 1.08998 * 109.46795 * 119.99663 * 2 1 3 29 29 H 1.08999 * 110.40464 * 23.80561 * 8 6 4 30 30 H 1.09007 * 110.40008 * 261.39155 * 8 6 4 31 31 H 1.08996 * 109.47287 * 45.65223 * 10 9 8 32 32 H 1.09001 * 109.46882 * 165.65808 * 10 9 8 33 33 H 0.97006 * 119.99676 * 179.97438 * 14 13 11 34 34 H 1.09001 * 110.46792 * 157.15900 * 19 9 8 35 35 H 1.08998 * 110.47025 * 279.61974 * 19 9 8 36 36 H 1.09005 * 113.92335 * 334.81077 * 21 20 19 37 37 H 1.08995 * 113.92798 * 106.70600 * 21 20 19 38 38 H 1.08998 * 113.92553 * 222.58048 * 23 22 21 39 39 H 1.09006 * 113.92527 * 90.68062 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.2060 3.6437 0.4225 8 6 5.2475 2.9726 0.7939 9 7 6.1135 3.9148 0.0376 10 6 7.5324 3.6850 0.3410 11 6 7.8452 4.2197 1.7149 12 1 7.0676 4.6834 2.3037 13 6 9.1240 4.1169 2.2200 14 7 9.3968 4.5830 3.4191 15 14 10.4687 3.3141 1.2016 16 1 11.1452 4.3452 0.3743 17 1 11.4595 2.6760 2.1051 18 1 9.8702 2.2832 0.3160 19 6 5.8197 3.6220 -1.3917 20 6 4.3103 3.3547 -1.4240 21 6 3.8205 2.4407 -2.5475 22 8 2.7162 3.3652 -2.6519 23 6 3.4540 4.4534 -2.0544 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.6994 1.9811 0.8229 30 1 5.0758 3.3425 1.8048 31 1 7.7418 2.6158 0.3109 32 1 8.1494 4.1971 -0.3973 33 1 10.2964 4.5103 3.7746 34 1 6.0682 4.4806 -2.0156 35 1 6.3700 2.7407 -1.7212 36 1 4.4707 2.4283 -3.4223 37 1 3.5326 1.4441 -2.2130 38 1 2.8788 5.0341 -1.3333 39 1 3.9891 5.0725 -2.7745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451127207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:42 Heat of formation + Delta-G solvation = -83.099575 kcal Electronic energy + Delta-G solvation = -21612.756281 eV Core-core repulsion = 18329.304560 eV Total energy + Delta-G solvation = -3283.451721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60294 -39.88104 -37.44736 -36.40103 -33.06426 -32.01108 -31.25617 -29.50292 -27.54221 -26.76814 -24.61471 -23.66696 -22.65251 -21.05792 -20.42707 -18.85585 -17.76663 -16.99373 -16.81060 -16.53453 -15.96337 -15.66247 -15.40339 -14.41628 -14.28703 -14.08504 -13.91523 -13.51373 -13.11500 -12.79833 -12.74339 -12.35630 -12.18092 -12.05228 -11.74488 -11.67495 -11.35212 -11.22750 -11.02781 -10.66443 -10.60707 -10.43324 -10.30410 -10.24241 -9.86788 -9.66060 -9.34546 -8.59474 -7.70227 -6.07888 -4.05867 2.18156 2.59212 3.26629 3.34504 3.36362 3.55696 4.05650 4.37882 4.39819 4.64538 4.76178 4.81364 4.84535 4.91530 5.09498 5.11183 5.21372 5.25149 5.37897 5.43708 5.49920 5.56982 5.60003 5.70359 5.79553 5.84906 5.98991 6.03537 6.06141 6.24979 6.34989 6.43496 6.65658 6.81381 7.39559 7.70119 7.76060 7.79153 8.58582 9.00554 9.53319 11.05170 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.005188 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.282452 B = 5395.255690 C = 5972.878522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.351 6.351 4 C 0.475 3.525 5 O -0.504 6.504 6 C -0.067 4.067 7 H 0.115 0.885 8 C 0.057 3.943 9 N -0.490 5.490 10 C 0.151 3.849 11 C -0.510 4.510 12 H 0.081 0.919 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.268 1.268 19 C 0.034 3.966 20 C -0.117 4.117 21 C 0.043 3.957 22 O -0.378 6.378 23 C 0.059 3.941 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.094 0.906 31 H -0.004 1.004 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 -5.948 -10.578 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.268 6.268 4 C 0.318 3.682 5 O -0.392 6.392 6 C -0.087 4.087 7 H 0.133 0.867 8 C -0.072 4.072 9 N -0.214 5.214 10 C 0.024 3.976 11 C -0.548 4.548 12 H 0.099 0.901 13 C -0.132 4.132 14 N -0.537 5.537 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.095 4.095 20 C -0.118 4.118 21 C -0.034 4.034 22 O -0.297 6.297 23 C -0.018 4.018 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.013 0.987 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.397 -5.709 -10.389 19.432 hybrid contribution 1.317 -1.464 -0.520 2.037 sum -14.079 -7.174 -10.909 19.202 Atomic orbital electron populations 1.21791 0.92636 1.02767 1.03641 1.23012 0.95430 0.80556 1.02454 1.86573 1.24483 1.31999 1.83774 1.23496 0.80511 0.92531 0.71666 1.90674 1.60391 1.42920 1.45195 1.21646 0.99646 0.90821 0.96587 0.86725 1.23110 0.88824 0.97117 0.98123 1.65525 1.08058 1.46960 1.00877 1.20388 0.83867 0.94979 0.98352 1.20962 0.96554 1.38515 0.98786 0.90086 1.24887 0.98316 0.95128 0.94871 1.69889 1.20887 1.46499 1.16470 0.86889 0.82291 0.80219 0.80564 1.20080 1.21107 1.19274 1.23086 0.91992 1.00422 0.94008 1.23587 0.97751 0.96818 0.93665 1.23977 0.87861 0.94547 0.97002 1.89728 1.32122 1.22867 1.84977 1.23955 0.91800 0.90531 0.95491 0.91424 0.91386 0.90410 0.91471 0.91228 0.92099 0.88727 0.98661 0.95456 0.92609 0.89596 0.93526 0.89288 0.89905 0.88377 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.35 -4.86 10.22 -39.25 -0.40 -5.26 16 4 C 0.48 7.41 4.83 36.01 0.17 7.59 16 5 O -0.50 -9.05 15.30 -18.75 -0.29 -9.34 16 6 C -0.07 -1.03 3.32 -90.68 -0.30 -1.33 16 7 H 0.11 1.57 7.78 -51.93 -0.40 1.16 16 8 C 0.06 1.07 5.65 -1.98 -0.01 1.06 16 9 N -0.49 -9.92 5.33 -231.58 -1.23 -11.16 16 10 C 0.15 3.61 3.66 -4.97 -0.02 3.59 16 11 C -0.51 -14.35 9.52 -34.44 -0.33 -14.68 16 12 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 15 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 C 0.03 0.54 5.89 -2.58 -0.02 0.53 16 20 C -0.12 -1.65 1.20 -154.23 -0.18 -1.84 16 21 C 0.04 0.57 8.08 37.08 0.30 0.87 16 22 O -0.38 -5.23 12.46 -35.23 -0.44 -5.67 16 23 C 0.06 0.71 8.48 37.08 0.31 1.02 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 29 H 0.06 1.26 6.56 -51.93 -0.34 0.92 16 30 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 31 H 0.00 -0.11 6.83 -51.93 -0.35 -0.46 16 32 H 0.03 0.65 7.51 -51.93 -0.39 0.26 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.09 1.25 7.83 -51.93 -0.41 0.84 16 35 H 0.05 0.77 7.97 -51.93 -0.41 0.36 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.15 6.01 -51.93 -0.31 0.84 16 38 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 39 H 0.09 0.92 7.96 -51.93 -0.41 0.51 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -32.22 317.71 -7.02 -39.24 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.99 Total: -1.51 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.44 Total: -1.23 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.46 Total: -37.76 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.13 Total: -20.27 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.22 -7.02 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451127207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.864 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds