Wall clock time and date at job start Mon Mar 30 2020 04:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47134 * 2 1 4 4 C 1.34228 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00315 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99969 * 179.97438 * 4 3 2 7 7 H 1.08998 * 110.36477 * 24.47002 * 6 4 3 8 8 C 1.54663 * 110.40771 * 146.81818 * 6 4 3 9 9 N 1.48658 * 104.65283 * 142.60097 * 8 6 4 10 10 C 1.46901 * 111.00043 * 201.49198 * 9 8 6 11 11 C 1.50703 * 109.46695 * 285.65262 * 10 9 8 12 12 H 1.07998 * 119.99801 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00006 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99928 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99995 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46951 * 90.00109 * 15 13 11 17 17 H 1.48494 * 109.47033 * 210.00067 * 15 13 11 18 18 H 1.48500 * 109.46918 * 330.00443 * 15 13 11 19 19 C 1.48825 * 104.41452 * 321.15708 * 9 8 6 20 20 C 1.53330 * 104.41030 * 38.38754 * 19 9 8 21 21 C 1.52892 * 115.78796 * 206.80880 * 20 19 9 22 22 O 1.44399 * 85.14491 * 220.75987 * 21 20 19 23 23 C 1.44409 * 93.54503 * 23.37119 * 22 21 20 24 24 H 1.08999 * 109.47338 * 300.00276 * 1 2 3 25 25 H 1.08998 * 109.46795 * 60.00337 * 1 2 3 26 26 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47338 * 239.99724 * 2 1 3 28 28 H 1.08998 * 109.46795 * 119.99663 * 2 1 3 29 29 H 1.08999 * 110.40464 * 23.80561 * 8 6 4 30 30 H 1.09007 * 110.40008 * 261.39155 * 8 6 4 31 31 H 1.08996 * 109.47287 * 45.65223 * 10 9 8 32 32 H 1.09001 * 109.46882 * 165.65808 * 10 9 8 33 33 H 0.97006 * 119.99676 * 179.97438 * 14 13 11 34 34 H 1.09001 * 110.46792 * 157.15900 * 19 9 8 35 35 H 1.08998 * 110.47025 * 279.61974 * 19 9 8 36 36 H 1.09005 * 113.92335 * 334.81077 * 21 20 19 37 37 H 1.08995 * 113.92798 * 106.70600 * 21 20 19 38 38 H 1.08998 * 113.92553 * 222.58048 * 23 22 21 39 39 H 1.09006 * 113.92527 * 90.68062 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.2060 3.6437 0.4225 8 6 5.2475 2.9726 0.7939 9 7 6.1135 3.9148 0.0376 10 6 7.5324 3.6850 0.3410 11 6 7.8452 4.2197 1.7149 12 1 7.0676 4.6834 2.3037 13 6 9.1240 4.1169 2.2200 14 7 9.3968 4.5830 3.4191 15 14 10.4687 3.3141 1.2016 16 1 11.1452 4.3452 0.3743 17 1 11.4595 2.6760 2.1051 18 1 9.8702 2.2832 0.3160 19 6 5.8197 3.6220 -1.3917 20 6 4.3103 3.3547 -1.4240 21 6 3.8205 2.4407 -2.5475 22 8 2.7162 3.3652 -2.6519 23 6 3.4540 4.4534 -2.0544 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.6994 1.9811 0.8229 30 1 5.0758 3.3425 1.8048 31 1 7.7418 2.6158 0.3109 32 1 8.1494 4.1971 -0.3973 33 1 10.2964 4.5103 3.7746 34 1 6.0682 4.4806 -2.0156 35 1 6.3700 2.7407 -1.7212 36 1 4.4707 2.4283 -3.4223 37 1 3.5326 1.4441 -2.2130 38 1 2.8788 5.0341 -1.3333 39 1 3.9891 5.0725 -2.7745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451127207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:40 Heat of formation + Delta-G solvation = -106.581002 kcal Electronic energy + Delta-G solvation = -21613.774512 eV Core-core repulsion = 18329.304560 eV Total energy + Delta-G solvation = -3284.469952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.76474 -41.01144 -38.80630 -37.65455 -35.02461 -33.31403 -32.47495 -30.76140 -29.34841 -27.74973 -25.81133 -25.15883 -23.79776 -22.39196 -21.98633 -20.05172 -19.00009 -18.91102 -18.07282 -17.74943 -17.06878 -16.76819 -16.48903 -16.25969 -15.82725 -15.40400 -15.07820 -14.90255 -14.56624 -14.13010 -13.96270 -13.66618 -13.43471 -13.23346 -13.03248 -12.91434 -12.63996 -12.54604 -12.52251 -12.24472 -11.98317 -11.93924 -11.61818 -11.57903 -11.44852 -11.29669 -10.78967 -10.70621 -9.34429 -8.29715 -6.33446 0.94916 1.33421 1.35505 1.45260 1.49166 2.32936 2.52371 2.95734 3.03500 3.21513 3.36813 3.41762 3.78618 3.95836 3.99059 4.04753 4.12074 4.27886 4.29095 4.33745 4.44814 4.58142 4.61636 4.72596 4.76413 4.80048 4.83012 4.90515 4.94062 4.96994 5.00105 5.09754 5.10645 5.36748 5.47928 5.86358 5.96416 6.50535 6.59083 6.72579 7.30104 8.86829 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.005188 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.282452 B = 5395.255690 C = 5972.878522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.352 6.352 4 C 0.481 3.519 5 O -0.533 6.533 6 C -0.062 4.062 7 H 0.132 0.868 8 C 0.058 3.942 9 N -0.503 5.503 10 C 0.161 3.839 11 C -0.517 4.517 12 H 0.040 0.960 13 C 0.010 3.990 14 N -0.946 5.946 15 Si 0.944 3.056 16 H -0.259 1.259 17 H -0.283 1.283 18 H -0.256 1.256 19 C 0.034 3.966 20 C -0.120 4.120 21 C 0.049 3.951 22 O -0.390 6.390 23 C 0.066 3.934 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.075 0.925 31 H -0.013 1.013 32 H 0.038 0.962 33 H 0.267 0.733 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.148 -6.258 -13.059 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.268 6.268 4 C 0.325 3.675 5 O -0.423 6.423 6 C -0.082 4.082 7 H 0.150 0.850 8 C -0.070 4.070 9 N -0.227 5.227 10 C 0.033 3.967 11 C -0.556 4.556 12 H 0.058 0.942 13 C -0.187 4.187 14 N -0.586 5.586 15 Si 0.767 3.233 16 H -0.184 1.184 17 H -0.208 1.208 18 H -0.180 1.180 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.028 4.028 22 O -0.310 6.310 23 C -0.010 4.010 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.005 0.995 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.062 0.938 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.196 -6.011 -12.889 21.553 hybrid contribution 1.436 -1.367 0.321 2.009 sum -14.759 -7.378 -12.568 20.742 Atomic orbital electron populations 1.21813 0.90036 1.04453 1.03783 1.23355 0.97433 0.79100 1.02491 1.86562 1.23202 1.33874 1.83169 1.23454 0.81003 0.92156 0.70922 1.90660 1.61166 1.43772 1.46723 1.21554 0.97960 0.91409 0.97259 0.85017 1.22945 0.90685 0.95376 0.98010 1.65387 1.06002 1.47529 1.03762 1.20132 0.86506 0.93997 0.96017 1.21203 0.95757 1.38034 1.00562 0.94184 1.25813 1.01113 0.95750 0.96046 1.70042 1.21764 1.48298 1.18544 0.85761 0.78794 0.79662 0.79036 1.18392 1.20819 1.17995 1.23207 0.93475 1.01320 0.91363 1.23674 0.96498 0.98772 0.93146 1.24026 0.87789 0.93746 0.97211 1.89724 1.32639 1.23475 1.85120 1.24147 0.91098 0.89935 0.95793 0.91239 0.91227 0.87943 0.91275 0.91473 0.94408 0.90608 0.99493 0.94388 0.92381 0.87323 0.93760 0.86949 0.91002 0.87291 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.29 71.98 0.74 -1.25 16 2 C 0.05 1.03 6.19 71.98 0.45 1.48 16 3 O -0.35 -9.37 10.22 -51.40 -0.53 -9.89 16 4 C 0.48 14.80 4.83 71.24 0.34 15.15 16 5 O -0.53 -19.27 15.30 21.96 0.34 -18.94 16 6 C -0.06 -1.86 3.32 -10.83 -0.04 -1.89 16 7 H 0.13 3.45 7.78 -2.39 -0.02 3.43 16 8 C 0.06 2.26 5.65 86.53 0.49 2.75 16 9 N -0.50 -20.24 5.33 -886.57 -4.72 -24.96 16 10 C 0.16 7.68 3.66 85.56 0.31 7.99 16 11 C -0.52 -29.92 9.52 25.60 0.24 -29.68 16 12 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 13 C 0.01 0.61 5.47 84.65 0.46 1.07 16 14 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 15 Si 0.94 44.07 27.47 68.60 1.88 45.96 16 16 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.26 -11.36 6.54 99.48 0.65 -10.71 16 19 C 0.03 1.04 5.89 86.04 0.51 1.54 16 20 C -0.12 -3.13 1.20 -52.00 -0.06 -3.19 16 21 C 0.05 1.17 8.08 71.93 0.58 1.75 16 22 O -0.39 -9.62 12.46 -148.98 -1.86 -11.48 16 23 C 0.07 1.38 8.48 71.93 0.61 1.99 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 28 H 0.07 1.42 8.13 -2.39 -0.02 1.41 16 29 H 0.04 1.63 6.56 -2.39 -0.02 1.61 16 30 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 31 H -0.01 -0.62 6.83 -2.39 -0.02 -0.64 16 32 H 0.04 1.73 7.51 -2.39 -0.02 1.72 16 33 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 34 H 0.11 2.79 7.83 -2.39 -0.02 2.77 16 35 H 0.04 1.37 7.97 -2.39 -0.02 1.36 16 36 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.07 1.88 6.01 -2.39 -0.01 1.87 16 38 H 0.11 2.04 7.88 -2.39 -0.02 2.02 16 39 H 0.11 1.85 7.96 -2.38 -0.02 1.83 16 Total: -1.00 -71.08 317.71 1.03 -70.05 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.98 Total: 10.44 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.64 Total: -2.31 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -4.43 Total: -83.83 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -2.05 Total: -40.31 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -71.08 1.03 -70.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451127207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.532 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds