Wall clock time and date at job start Mon Mar 30 2020 05:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00145 * 2 1 4 4 C 1.53000 * 109.46661 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47107 * 65.00440 * 4 3 2 6 6 C 1.37101 * 119.99849 * 269.99260 * 5 4 3 7 7 H 1.07996 * 120.00000 * 146.19796 * 6 5 4 8 8 C 1.38953 * 119.99747 * 326.20679 * 6 5 4 9 9 N 1.31416 * 120.00135 * 336.16728 * 8 6 5 10 10 Si 1.86803 * 120.00013 * 156.17542 * 8 6 5 11 11 H 1.48499 * 109.46806 * 89.99360 * 10 8 6 12 12 H 1.48497 * 109.46921 * 209.99592 * 10 8 6 13 13 H 1.48498 * 109.46703 * 329.99571 * 10 8 6 14 14 C 1.34776 * 120.00431 * 89.99358 * 5 4 3 15 15 O 1.21296 * 120.00007 * 355.94593 * 14 5 4 16 16 C 1.50702 * 120.00050 * 175.94216 * 14 5 4 17 17 H 1.09004 * 115.56285 * 278.68791 * 16 14 5 18 18 C 1.52426 * 117.52180 * 132.90290 * 16 14 5 19 19 H 1.09005 * 116.66371 * 145.58327 * 18 16 14 20 20 C 1.52538 * 119.22881 * 1.09551 * 18 16 14 21 21 C 1.53119 * 109.61542 * 310.92039 * 20 18 16 22 22 C 1.53325 * 108.39799 * 307.24839 * 21 20 18 23 23 O 1.41796 * 108.70167 * 71.87044 * 22 21 20 24 24 C 1.42629 * 115.66722 * 305.62560 * 23 22 21 25 25 H 1.08998 * 115.43312 * 232.91589 * 24 23 22 26 26 H 1.09003 * 109.46903 * 299.99801 * 1 2 3 27 27 H 1.08997 * 109.47091 * 60.00066 * 1 2 3 28 28 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46987 * 59.99998 * 3 2 1 30 30 H 1.08993 * 109.46854 * 299.99914 * 3 2 1 31 31 H 1.09006 * 109.46697 * 184.99793 * 4 3 2 32 32 H 1.08999 * 109.47650 * 304.99540 * 4 3 2 33 33 H 0.96995 * 119.99964 * 185.58771 * 9 8 6 34 34 H 1.09006 * 109.44639 * 70.95810 * 20 18 16 35 35 H 1.08993 * 109.44823 * 190.87021 * 20 18 16 36 36 H 1.08994 * 109.68426 * 66.97764 * 21 20 18 37 37 H 1.09003 * 109.67843 * 187.52488 * 21 20 18 38 38 H 1.09005 * 109.57816 * 191.81096 * 22 21 20 39 39 H 1.08994 * 109.58375 * 312.07822 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0980 -0.7992 -1.3346 7 1 3.8815 -1.3046 -2.2642 8 6 4.4992 -1.5305 -0.2233 9 7 5.1954 -0.9506 0.7286 10 14 4.0491 -3.3381 -0.0824 11 1 5.1167 -4.1637 -0.7019 12 1 3.9095 -3.7031 1.3502 13 1 2.7634 -3.5841 -0.7836 14 6 4.2633 1.3327 -2.3201 15 8 4.0861 2.5316 -2.2699 16 6 4.8042 0.7030 -3.5778 17 1 5.8739 0.4930 -3.5763 18 6 4.1689 1.1143 -4.9009 19 1 4.8298 1.1640 -5.7663 20 6 3.0477 2.1485 -4.8991 21 6 1.9971 1.7658 -3.8530 22 6 1.5671 0.3162 -4.1069 23 8 2.6273 -0.5457 -3.7277 24 6 3.8904 -0.2739 -4.3319 25 1 4.3649 -1.1215 -4.8263 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.9786 2.1764 0.0902 32 1 3.8508 0.5684 0.8427 33 1 5.5447 -1.4779 1.4639 34 1 3.4588 3.1290 -4.6587 35 1 2.5832 2.1819 -5.8846 36 1 2.4250 1.8522 -2.8543 37 1 1.1339 2.4255 -3.9413 38 1 0.6792 0.0898 -3.5163 39 1 1.3459 0.1808 -5.1655 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:23 Heat of formation + Delta-G solvation = -69.843145 kcal Electronic energy + Delta-G solvation = -23210.078103 eV Core-core repulsion = 19927.201224 eV Total energy + Delta-G solvation = -3282.876879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26546 -37.75388 -36.69613 -34.70403 -33.94054 -32.22870 -31.38833 -29.13843 -26.04949 -25.73375 -24.55557 -23.39039 -22.78366 -21.06232 -18.91068 -18.56431 -16.89826 -16.31387 -15.85252 -15.42135 -15.25509 -14.97390 -14.47181 -14.27686 -14.22056 -13.78596 -13.52593 -13.29803 -12.69467 -12.38499 -12.32229 -11.88679 -11.53416 -11.19372 -11.05144 -11.02874 -10.83669 -10.50303 -10.38153 -10.24616 -10.17284 -9.79968 -9.72838 -9.21467 -8.96798 -8.82685 -8.65248 -8.22952 -7.33368 -6.16895 -3.71907 3.26851 3.37833 3.48192 3.91874 4.02506 4.32912 4.42632 4.60690 4.83864 5.09856 5.24933 5.39716 5.43494 5.49612 5.56771 5.72230 5.74836 5.80422 5.88785 6.01976 6.08912 6.11339 6.17486 6.21975 6.34207 6.40179 6.50803 6.55634 6.58871 6.69262 6.83760 7.03184 7.38884 7.80377 7.91651 7.94362 8.12505 8.69240 9.32096 9.68864 10.08796 10.87101 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.009994 C = 0.008867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.539880 B = 2801.091830 C = 3156.978171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.105 3.895 5 N -0.410 5.410 6 C -0.302 4.302 7 H 0.107 0.893 8 C 0.044 3.956 9 N -0.873 5.873 10 Si 0.913 3.087 11 H -0.284 1.284 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.498 3.502 15 O -0.613 6.613 16 C -0.154 4.154 17 H 0.121 0.879 18 C -0.158 4.158 19 H 0.104 0.896 20 C -0.077 4.077 21 C -0.189 4.189 22 C 0.066 3.934 23 O -0.325 6.325 24 C 0.044 3.956 25 H 0.125 0.875 26 H 0.027 0.973 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.266 0.734 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.118 0.882 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 1.230 -6.327 8.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C -0.022 4.022 4 C -0.018 4.018 5 N -0.125 5.125 6 C -0.430 4.430 7 H 0.125 0.875 8 C -0.160 4.160 9 N -0.512 5.512 10 Si 0.741 3.259 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.288 3.712 15 O -0.503 6.503 16 C -0.175 4.175 17 H 0.139 0.861 18 C -0.177 4.177 19 H 0.122 0.878 20 C -0.114 4.114 21 C -0.226 4.226 22 C -0.011 4.011 23 O -0.242 6.242 24 C -0.015 4.015 25 H 0.142 0.858 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.897 1.419 -5.902 8.463 hybrid contribution -0.355 -0.518 -0.013 0.628 sum -6.251 0.901 -5.915 8.653 Atomic orbital electron populations 1.22623 0.83801 1.01609 0.98540 1.88191 1.16965 1.27332 1.94923 1.22982 0.96569 0.84479 0.98185 1.21581 0.89431 0.98991 0.91841 1.43312 1.54050 1.06545 1.08587 1.19729 1.43717 0.80217 0.99346 0.87548 1.25234 0.94935 0.99645 0.96196 1.69822 1.31550 1.36680 1.13133 0.86153 0.79386 0.83163 0.77229 1.21054 1.21303 1.19154 1.19076 0.81122 0.85727 0.85281 1.90491 1.60047 1.15243 1.84500 1.22548 0.99669 1.03389 0.91892 0.86076 1.22587 1.01329 0.96489 0.97279 0.87820 1.20781 0.94452 0.98531 0.97670 1.22923 0.99009 0.96329 1.04387 1.22354 0.90306 0.90304 0.98149 1.87760 1.15818 1.53942 1.66700 1.22884 0.86806 0.92308 0.99520 0.85787 0.95409 0.95188 0.90539 0.94680 0.94390 0.91416 0.86299 0.92421 0.90616 0.92820 0.86439 0.92391 0.89816 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.78 10.18 -35.23 -0.36 -8.13 16 3 C 0.06 1.18 6.28 37.16 0.23 1.41 16 4 C 0.11 2.55 5.41 -4.04 -0.02 2.53 16 5 N -0.41 -10.28 2.52 -114.81 -0.29 -10.57 16 6 C -0.30 -7.79 7.58 -14.93 -0.11 -7.91 16 7 H 0.11 2.73 4.60 -52.49 -0.24 2.49 16 8 C 0.04 1.14 4.93 -17.46 -0.09 1.05 16 9 N -0.87 -23.57 11.35 55.50 0.63 -22.94 16 10 Si 0.91 20.98 29.62 -169.99 -5.03 15.95 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 C 0.50 12.00 4.35 -10.98 -0.05 11.95 16 15 O -0.61 -15.63 13.76 5.54 0.08 -15.55 16 16 C -0.15 -3.16 5.29 -91.78 -0.49 -3.65 16 17 H 0.12 2.38 8.14 -51.93 -0.42 1.95 16 18 C -0.16 -2.70 6.14 -91.36 -0.56 -3.26 16 19 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 20 C -0.08 -1.31 5.30 -26.91 -0.14 -1.45 16 21 C -0.19 -3.47 5.55 -26.50 -0.15 -3.62 16 22 C 0.07 1.15 6.85 37.33 0.26 1.40 16 23 O -0.32 -6.61 7.97 -35.22 -0.28 -6.89 16 24 C 0.04 0.80 5.87 -26.65 -0.16 0.64 16 25 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.82 7.00 -51.93 -0.36 0.45 16 31 H 0.07 1.64 7.48 -51.93 -0.39 1.25 16 32 H 0.12 3.11 5.34 -51.93 -0.28 2.84 16 33 H 0.27 6.85 8.32 -40.82 -0.34 6.51 16 34 H 0.08 1.38 7.78 -51.93 -0.40 0.98 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.12 2.60 2.66 -51.93 -0.14 2.46 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.04 0.55 8.07 -51.93 -0.42 0.14 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -29.89 303.93 -6.43 -36.32 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.59 Total: 6.49 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.16 Total: 0.74 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.34 Total: -33.51 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.56 Total: -30.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.89 -6.43 -36.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.518 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds