Wall clock time and date at job start Mon Mar 30 2020 05:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00145 * 2 1 4 4 C 1.53000 * 109.46661 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47107 * 65.00440 * 4 3 2 6 6 C 1.37101 * 119.99849 * 269.99260 * 5 4 3 7 7 H 1.07996 * 120.00000 * 146.19796 * 6 5 4 8 8 C 1.38953 * 119.99747 * 326.20679 * 6 5 4 9 9 N 1.31416 * 120.00135 * 336.16728 * 8 6 5 10 10 Si 1.86803 * 120.00013 * 156.17542 * 8 6 5 11 11 H 1.48499 * 109.46806 * 89.99360 * 10 8 6 12 12 H 1.48497 * 109.46921 * 209.99592 * 10 8 6 13 13 H 1.48498 * 109.46703 * 329.99571 * 10 8 6 14 14 C 1.34776 * 120.00431 * 89.99358 * 5 4 3 15 15 O 1.21296 * 120.00007 * 355.94593 * 14 5 4 16 16 C 1.50702 * 120.00050 * 175.94216 * 14 5 4 17 17 H 1.09004 * 115.56285 * 278.68791 * 16 14 5 18 18 C 1.52426 * 117.52180 * 132.90290 * 16 14 5 19 19 H 1.09005 * 116.66371 * 145.58327 * 18 16 14 20 20 C 1.52538 * 119.22881 * 1.09551 * 18 16 14 21 21 C 1.53119 * 109.61542 * 310.92039 * 20 18 16 22 22 C 1.53325 * 108.39799 * 307.24839 * 21 20 18 23 23 O 1.41796 * 108.70167 * 71.87044 * 22 21 20 24 24 C 1.42629 * 115.66722 * 305.62560 * 23 22 21 25 25 H 1.08998 * 115.43312 * 232.91589 * 24 23 22 26 26 H 1.09003 * 109.46903 * 299.99801 * 1 2 3 27 27 H 1.08997 * 109.47091 * 60.00066 * 1 2 3 28 28 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46987 * 59.99998 * 3 2 1 30 30 H 1.08993 * 109.46854 * 299.99914 * 3 2 1 31 31 H 1.09006 * 109.46697 * 184.99793 * 4 3 2 32 32 H 1.08999 * 109.47650 * 304.99540 * 4 3 2 33 33 H 0.96995 * 119.99964 * 185.58771 * 9 8 6 34 34 H 1.09006 * 109.44639 * 70.95810 * 20 18 16 35 35 H 1.08993 * 109.44823 * 190.87021 * 20 18 16 36 36 H 1.08994 * 109.68426 * 66.97764 * 21 20 18 37 37 H 1.09003 * 109.67843 * 187.52488 * 21 20 18 38 38 H 1.09005 * 109.57816 * 191.81096 * 22 21 20 39 39 H 1.08994 * 109.58375 * 312.07822 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0980 -0.7992 -1.3346 7 1 3.8815 -1.3046 -2.2642 8 6 4.4992 -1.5305 -0.2233 9 7 5.1954 -0.9506 0.7286 10 14 4.0491 -3.3381 -0.0824 11 1 5.1167 -4.1637 -0.7019 12 1 3.9095 -3.7031 1.3502 13 1 2.7634 -3.5841 -0.7836 14 6 4.2633 1.3327 -2.3201 15 8 4.0861 2.5316 -2.2699 16 6 4.8042 0.7030 -3.5778 17 1 5.8739 0.4930 -3.5763 18 6 4.1689 1.1143 -4.9009 19 1 4.8298 1.1640 -5.7663 20 6 3.0477 2.1485 -4.8991 21 6 1.9971 1.7658 -3.8530 22 6 1.5671 0.3162 -4.1069 23 8 2.6273 -0.5457 -3.7277 24 6 3.8904 -0.2739 -4.3319 25 1 4.3649 -1.1215 -4.8263 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.9786 2.1764 0.0902 32 1 3.8508 0.5684 0.8427 33 1 5.5447 -1.4779 1.4639 34 1 3.4588 3.1290 -4.6587 35 1 2.5832 2.1819 -5.8846 36 1 2.4250 1.8522 -2.8543 37 1 1.1339 2.4255 -3.9413 38 1 0.6792 0.0898 -3.5163 39 1 1.3459 0.1808 -5.1655 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:23 Heat of formation + Delta-G solvation = -89.106109 kcal Electronic energy + Delta-G solvation = -23210.913408 eV Core-core repulsion = 19927.201224 eV Total energy + Delta-G solvation = -3283.712184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82714 -39.43889 -38.34582 -36.53728 -35.46324 -33.66103 -33.31553 -30.87641 -27.48337 -27.23941 -26.40546 -24.95813 -24.23458 -22.77286 -20.65678 -20.09806 -18.53281 -18.00500 -17.39853 -17.10042 -16.84510 -16.58286 -16.07488 -16.02885 -15.82036 -15.45427 -15.04078 -14.73954 -14.27049 -14.07169 -13.75348 -13.54278 -13.23455 -12.84520 -12.82621 -12.62390 -12.48898 -12.18121 -12.05618 -11.82899 -11.76145 -11.40634 -11.27828 -10.88700 -10.62996 -10.44757 -10.18230 -9.93712 -9.27998 -8.12859 -5.71528 1.44432 1.52548 1.65507 2.11158 2.42193 2.61096 3.01416 3.05412 3.13657 3.36068 3.73266 3.97701 3.99665 4.11724 4.19999 4.26735 4.30960 4.48523 4.54584 4.56719 4.59742 4.64714 4.73074 4.80229 4.84727 4.91096 4.95771 5.00915 5.11757 5.21101 5.33912 5.42946 5.60284 5.83233 6.14640 6.47668 6.53472 6.72119 7.36507 7.79632 8.19146 8.91829 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.009994 C = 0.008867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.539880 B = 2801.091830 C = 3156.978171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.389 6.389 3 C 0.070 3.930 4 C 0.103 3.897 5 N -0.422 5.422 6 C -0.300 4.300 7 H 0.109 0.891 8 C 0.002 3.998 9 N -0.905 5.905 10 Si 0.968 3.032 11 H -0.274 1.274 12 H -0.291 1.291 13 H -0.269 1.269 14 C 0.496 3.504 15 O -0.635 6.635 16 C -0.195 4.195 17 H 0.124 0.876 18 C -0.135 4.135 19 H 0.141 0.859 20 C -0.078 4.078 21 C -0.193 4.193 22 C 0.066 3.934 23 O -0.353 6.353 24 C 0.050 3.950 25 H 0.153 0.847 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.265 0.735 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 0.458 -8.315 10.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C -0.008 4.008 4 C -0.021 4.021 5 N -0.137 5.137 6 C -0.428 4.428 7 H 0.126 0.874 8 C -0.198 4.198 9 N -0.545 5.545 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.194 1.194 14 C 0.287 3.713 15 O -0.526 6.526 16 C -0.216 4.216 17 H 0.141 0.859 18 C -0.153 4.153 19 H 0.159 0.841 20 C -0.115 4.115 21 C -0.230 4.230 22 C -0.010 4.010 23 O -0.271 6.271 24 C -0.008 4.008 25 H 0.170 0.830 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.049 0.647 -7.902 10.609 hybrid contribution -0.048 -0.181 0.596 0.624 sum -7.097 0.467 -7.307 10.197 Atomic orbital electron populations 1.22846 0.81085 1.03020 1.00050 1.88118 1.19997 1.27434 1.95196 1.22729 0.94488 0.84706 0.98870 1.21485 0.91717 0.97588 0.91316 1.43451 1.54729 1.06582 1.08964 1.19860 1.42958 0.80624 0.99405 0.87417 1.25882 0.94993 1.02883 0.96081 1.69926 1.32926 1.37827 1.13806 0.85300 0.79004 0.79463 0.76780 1.20036 1.21661 1.19389 1.19643 0.80059 0.85536 0.86064 1.90456 1.60751 1.16329 1.85084 1.22584 1.00204 1.06785 0.92014 0.85856 1.22779 1.00887 0.95511 0.96138 0.84146 1.20837 0.94212 0.97460 0.99025 1.22861 0.99872 0.97527 1.02760 1.22465 0.89550 0.89137 0.99869 1.87696 1.16902 1.54708 1.67805 1.23173 0.85638 0.93696 0.98341 0.83032 0.93292 0.94182 0.89231 0.92383 0.95050 0.92810 0.88412 0.92576 0.92343 0.89142 0.90261 0.90945 0.89843 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -16.84 10.18 -148.98 -1.52 -18.35 16 3 C 0.07 2.98 6.28 71.98 0.45 3.43 16 4 C 0.10 5.15 5.41 86.38 0.47 5.62 16 5 N -0.42 -21.57 2.52 -635.52 -1.60 -23.17 16 6 C -0.30 -15.59 7.58 84.04 0.64 -14.96 16 7 H 0.11 5.49 4.60 -2.91 -0.01 5.48 16 8 C 0.00 0.10 4.93 84.93 0.42 0.52 16 9 N -0.90 -49.97 11.35 21.66 0.25 -49.72 16 10 Si 0.97 43.09 29.62 68.60 2.03 45.12 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 14 C 0.50 24.18 4.35 87.66 0.38 24.56 16 15 O -0.64 -33.09 13.76 -3.08 -0.04 -33.14 16 16 C -0.19 -7.83 5.29 -11.54 -0.06 -7.89 16 17 H 0.12 4.79 8.14 -2.38 -0.02 4.77 16 18 C -0.13 -4.20 6.14 -11.27 -0.07 -4.27 16 19 H 0.14 3.35 8.14 -2.38 -0.02 3.33 16 20 C -0.08 -2.44 5.30 30.48 0.16 -2.28 16 21 C -0.19 -6.75 5.55 30.74 0.17 -6.58 16 22 C 0.07 2.15 6.85 72.09 0.49 2.64 16 23 O -0.35 -13.69 7.97 -148.92 -1.19 -14.87 16 24 C 0.05 1.71 5.87 30.64 0.18 1.89 16 25 H 0.15 4.29 8.14 -2.39 -0.02 4.27 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.03 1.37 7.00 -2.39 -0.02 1.35 16 31 H 0.05 2.74 7.48 -2.38 -0.02 2.72 16 32 H 0.10 5.33 5.34 -2.39 -0.01 5.31 16 33 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 34 H 0.06 2.04 7.78 -2.38 -0.02 2.02 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 3.49 2.66 -2.39 -0.01 3.48 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.07 1.76 8.07 -2.39 -0.02 1.75 16 Total: -1.00 -65.47 303.93 3.46 -62.01 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 1.05 Total: 27.35 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 4.48 Total: 4.77 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.36 Total: -72.89 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: -2.75 Total: -66.36 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.47 3.46 -62.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.093 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds