Wall clock time and date at job start Mon Mar 30 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 H 1.08997 * 109.47025 * 178.09848 * 3 2 1 5 5 C 1.50698 * 109.47318 * 58.09524 * 3 2 1 6 6 N 1.34775 * 119.99898 * 60.00104 * 5 3 2 7 7 O 1.21277 * 120.00290 * 240.00459 * 5 3 2 8 8 N 1.46907 * 109.46591 * 298.10048 * 3 2 1 9 9 C 1.46904 * 110.99311 * 187.87725 * 8 3 2 10 10 C 1.53240 * 109.33531 * 187.24841 * 9 8 3 11 11 N 1.47076 * 108.52334 * 306.17302 * 10 9 8 12 12 C 1.34784 * 120.88198 * 231.18043 * 11 10 9 13 13 O 1.21688 * 119.99431 * 5.06868 * 12 11 10 14 14 C 1.46373 * 120.00190 * 185.05674 * 12 11 10 15 15 H 1.08001 * 120.00104 * 354.98851 * 14 12 11 16 16 C 1.40050 * 119.99834 * 174.99107 * 14 12 11 17 17 N 1.30667 * 119.99832 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99744 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46932 * 269.99875 * 18 16 14 20 20 H 1.48498 * 109.47268 * 30.00057 * 18 16 14 21 21 H 1.48504 * 109.47004 * 150.00048 * 18 16 14 22 22 C 1.47071 * 118.24040 * 51.45930 * 11 10 9 23 23 C 1.46896 * 110.99913 * 312.17577 * 8 3 2 24 24 H 1.08996 * 109.46623 * 64.71963 * 1 2 3 25 25 H 1.09001 * 109.46755 * 184.71367 * 1 2 3 26 26 H 1.09000 * 109.46956 * 304.71504 * 1 2 3 27 27 H 1.08998 * 109.47364 * 239.99422 * 2 1 3 28 28 H 1.09006 * 109.46806 * 119.99298 * 2 1 3 29 29 H 0.97001 * 119.99781 * 0.02562 * 6 5 3 30 30 H 0.96999 * 120.00415 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.49432 * 67.29845 * 9 8 3 32 32 H 1.08993 * 109.49525 * 307.20899 * 9 8 3 33 33 H 1.09001 * 109.63016 * 186.45503 * 10 9 8 34 34 H 1.09004 * 109.62845 * 65.88290 * 10 9 8 35 35 H 0.97009 * 119.99676 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.63327 * 68.25070 * 22 11 10 37 37 H 1.09000 * 109.63488 * 188.83564 * 22 11 10 38 38 H 1.09007 * 109.49537 * 292.70820 * 23 8 3 39 39 H 1.08998 * 109.49442 * 52.79269 * 23 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1295 1.4427 0.0341 5 6 1.4996 2.1665 1.2061 6 7 1.7866 1.7197 2.4449 7 8 0.8063 3.1511 1.0622 8 7 1.5882 2.1216 -1.2218 9 6 2.2106 3.4461 -1.3487 10 6 1.5810 4.1915 -2.5303 11 7 1.6801 3.3406 -3.7259 12 6 2.1960 3.8198 -4.8752 13 8 2.6716 4.9394 -4.9084 14 6 2.1844 2.9933 -6.0832 15 1 1.8372 1.9718 -6.0354 16 6 2.6237 3.5273 -7.3012 17 7 3.0443 4.7631 -7.3589 18 14 2.6082 2.4728 -8.8430 19 1 3.9065 1.7633 -8.9704 20 1 1.5080 1.4796 -8.7524 21 1 2.3978 3.3375 -10.0319 22 6 1.1957 1.9549 -3.6359 23 6 1.8458 1.2957 -2.4090 24 1 -0.3632 0.4389 -0.9292 25 1 -0.3633 -1.0242 0.0845 26 1 -0.3633 0.5853 0.8447 27 1 1.8935 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.3414 0.9324 2.5600 30 1 1.4390 2.1858 3.2213 31 1 3.2807 3.3302 -1.5205 32 1 2.0482 4.0136 -0.4325 33 1 2.1156 5.1261 -2.7006 34 1 0.5329 4.4001 -2.3152 35 1 3.3482 5.1331 -8.2026 36 1 0.1113 1.9525 -3.5250 37 1 1.4755 1.4098 -4.5373 38 1 2.9211 1.2098 -2.5660 39 1 1.4189 0.3037 -2.2617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568174600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:25 Heat of formation + Delta-G solvation = -57.249625 kcal Electronic energy + Delta-G solvation = -21674.574123 eV Core-core repulsion = 18424.536091 eV Total energy + Delta-G solvation = -3250.038032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23690 -38.30641 -36.57756 -34.58865 -33.51318 -32.48506 -31.93604 -30.32145 -28.03173 -26.24579 -24.60742 -23.55310 -22.17396 -20.86695 -19.69056 -18.74492 -17.62871 -16.78931 -16.33791 -15.74391 -15.62021 -15.25760 -14.39796 -14.37054 -14.20277 -13.92005 -13.66131 -13.41151 -13.04482 -12.73456 -12.42786 -11.75137 -11.64549 -11.55989 -11.30873 -11.18063 -10.98318 -10.93969 -10.84081 -10.64899 -10.29722 -10.16594 -10.02021 -9.74748 -9.61201 -8.83671 -8.10078 -7.53605 -7.11035 -6.16844 -4.61783 2.64589 3.14686 3.21555 3.24770 3.31210 4.03570 4.13025 4.58482 4.63325 4.69958 4.79519 4.96720 5.13081 5.34291 5.50733 5.57080 5.60430 5.74980 5.78382 5.86239 5.88092 5.98807 6.01613 6.20234 6.29749 6.38992 6.51800 6.64429 6.68747 6.82359 7.06496 7.33264 7.35764 7.47549 7.68092 8.17138 8.25915 8.41478 9.04598 9.50169 10.61228 10.80084 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.004758 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.989444 B = 5883.310499 C = 6443.156716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.063 3.937 4 H 0.062 0.938 5 C 0.524 3.476 6 N -0.862 5.862 7 O -0.517 6.517 8 N -0.510 5.510 9 C 0.044 3.956 10 C 0.129 3.871 11 N -0.645 5.645 12 C 0.560 3.440 13 O -0.579 6.579 14 C -0.545 4.545 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.264 1.264 21 H -0.279 1.279 22 C 0.130 3.870 23 C 0.035 3.965 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.398 0.602 30 H 0.399 0.601 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.268 0.732 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.035 0.965 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -12.531 15.900 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.050 4.050 4 H 0.080 0.920 5 C 0.308 3.692 6 N -0.427 5.427 7 O -0.391 6.391 8 N -0.236 5.236 9 C -0.084 4.084 10 C 0.005 3.995 11 N -0.383 5.383 12 C 0.365 3.635 13 O -0.462 6.462 14 C -0.582 4.582 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.188 1.188 21 H -0.205 1.205 22 C 0.005 3.995 23 C -0.093 4.093 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.226 0.774 30 H 0.230 0.770 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.154 -11.022 15.466 19.114 hybrid contribution 1.057 -0.959 -0.250 1.449 sum -1.097 -11.981 15.217 19.398 Atomic orbital electron populations 1.21717 0.94339 1.00859 1.03501 1.21675 0.97875 0.93253 1.02750 1.21622 0.98001 0.94596 0.90765 0.92015 1.20510 0.79896 0.84286 0.84482 1.43898 1.56713 1.34082 1.07994 1.90747 1.36664 1.25816 1.85885 1.61700 1.58802 1.03040 1.00066 1.22631 0.95599 0.89735 1.00484 1.21159 0.99536 0.94733 0.84077 1.48251 1.67337 1.11166 1.11585 1.18254 0.76968 0.86746 0.81496 1.90586 1.49826 1.21735 1.84040 1.20968 1.46065 0.99126 0.91992 0.90973 1.25727 0.92885 0.94699 0.99883 1.70022 1.30335 1.13268 1.26098 0.86402 0.79162 0.80326 0.81051 1.19795 1.18846 1.20470 1.21559 0.97204 0.84451 0.96263 1.22848 0.99157 0.96733 0.90578 0.90892 0.93076 0.93033 0.90099 0.91564 0.77440 0.77025 0.95379 0.89641 0.89726 0.93066 0.92136 0.93155 0.88757 0.94628 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.36 37.16 0.35 -1.14 16 2 C -0.12 -1.06 5.05 -26.73 -0.13 -1.20 16 3 C 0.06 0.75 2.22 -68.86 -0.15 0.59 16 4 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 5 C 0.52 6.48 5.65 -10.99 -0.06 6.42 16 6 N -0.86 -6.51 8.77 31.22 0.27 -6.24 16 7 O -0.52 -8.78 15.35 5.56 0.09 -8.70 16 8 N -0.51 -7.98 3.65 -227.43 -0.83 -8.81 16 9 C 0.04 0.80 5.26 -3.70 -0.02 0.78 16 10 C 0.13 2.81 6.61 -3.60 -0.02 2.78 16 11 N -0.64 -15.35 3.00 -173.84 -0.52 -15.87 16 12 C 0.56 16.32 7.63 -12.98 -0.10 16.22 16 13 O -0.58 -19.21 14.49 5.20 0.08 -19.13 16 14 C -0.54 -15.38 8.86 -35.63 -0.32 -15.69 16 15 H 0.07 1.84 5.73 -52.49 -0.30 1.54 16 16 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 17 N -0.77 -23.26 11.84 55.55 0.66 -22.60 16 18 Si 0.91 20.08 29.56 -169.99 -5.02 15.06 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.13 2.49 6.50 -3.37 -0.02 2.47 16 23 C 0.04 0.54 4.86 -3.46 -0.02 0.53 16 24 H 0.07 0.89 7.18 -51.93 -0.37 0.52 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.58 6.99 -51.93 -0.36 0.21 16 27 H 0.08 0.71 6.04 -51.93 -0.31 0.40 16 28 H 0.07 0.42 7.62 -51.93 -0.40 0.02 16 29 H 0.40 1.79 8.28 -40.82 -0.34 1.45 16 30 H 0.40 2.63 8.93 -40.82 -0.36 2.26 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.54 5.97 -51.93 -0.31 1.23 16 33 H 0.08 2.01 7.04 -51.93 -0.37 1.65 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.83 5.46 -51.93 -0.28 1.55 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.02 5.19 -51.93 -0.27 0.75 16 LS Contribution 307.04 15.07 4.63 4.63 Total: -1.00 -37.05 307.04 -6.60 -43.65 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.35 Total: 3.91 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -0.59 Total: 14.11 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.42 Total: -53.52 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: 0.16 Total: -27.83 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -37.05 -6.60 -43.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568174600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.602 kcal (2) G-P(sol) polarization free energy of solvation -37.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds