Wall clock time and date at job start Mon Mar 30 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 H 1.08997 * 109.47025 * 178.09848 * 3 2 1 5 5 C 1.50698 * 109.47318 * 58.09524 * 3 2 1 6 6 N 1.34775 * 119.99898 * 60.00104 * 5 3 2 7 7 O 1.21277 * 120.00290 * 240.00459 * 5 3 2 8 8 N 1.46907 * 109.46591 * 298.10048 * 3 2 1 9 9 C 1.46904 * 110.99311 * 187.87725 * 8 3 2 10 10 C 1.53240 * 109.33531 * 187.24841 * 9 8 3 11 11 N 1.47076 * 108.52334 * 306.17302 * 10 9 8 12 12 C 1.34784 * 120.88198 * 231.18043 * 11 10 9 13 13 O 1.21688 * 119.99431 * 5.06868 * 12 11 10 14 14 C 1.46373 * 120.00190 * 185.05674 * 12 11 10 15 15 H 1.08001 * 120.00104 * 354.98851 * 14 12 11 16 16 C 1.40050 * 119.99834 * 174.99107 * 14 12 11 17 17 N 1.30667 * 119.99832 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99744 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46932 * 269.99875 * 18 16 14 20 20 H 1.48498 * 109.47268 * 30.00057 * 18 16 14 21 21 H 1.48504 * 109.47004 * 150.00048 * 18 16 14 22 22 C 1.47071 * 118.24040 * 51.45930 * 11 10 9 23 23 C 1.46896 * 110.99913 * 312.17577 * 8 3 2 24 24 H 1.08996 * 109.46623 * 64.71963 * 1 2 3 25 25 H 1.09001 * 109.46755 * 184.71367 * 1 2 3 26 26 H 1.09000 * 109.46956 * 304.71504 * 1 2 3 27 27 H 1.08998 * 109.47364 * 239.99422 * 2 1 3 28 28 H 1.09006 * 109.46806 * 119.99298 * 2 1 3 29 29 H 0.97001 * 119.99781 * 0.02562 * 6 5 3 30 30 H 0.96999 * 120.00415 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.49432 * 67.29845 * 9 8 3 32 32 H 1.08993 * 109.49525 * 307.20899 * 9 8 3 33 33 H 1.09001 * 109.63016 * 186.45503 * 10 9 8 34 34 H 1.09004 * 109.62845 * 65.88290 * 10 9 8 35 35 H 0.97009 * 119.99676 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.63327 * 68.25070 * 22 11 10 37 37 H 1.09000 * 109.63488 * 188.83564 * 22 11 10 38 38 H 1.09007 * 109.49537 * 292.70820 * 23 8 3 39 39 H 1.08998 * 109.49442 * 52.79269 * 23 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1295 1.4427 0.0341 5 6 1.4996 2.1665 1.2061 6 7 1.7866 1.7197 2.4449 7 8 0.8063 3.1511 1.0622 8 7 1.5882 2.1216 -1.2218 9 6 2.2106 3.4461 -1.3487 10 6 1.5810 4.1915 -2.5303 11 7 1.6801 3.3406 -3.7259 12 6 2.1960 3.8198 -4.8752 13 8 2.6716 4.9394 -4.9084 14 6 2.1844 2.9933 -6.0832 15 1 1.8372 1.9718 -6.0354 16 6 2.6237 3.5273 -7.3012 17 7 3.0443 4.7631 -7.3589 18 14 2.6082 2.4728 -8.8430 19 1 3.9065 1.7633 -8.9704 20 1 1.5080 1.4796 -8.7524 21 1 2.3978 3.3375 -10.0319 22 6 1.1957 1.9549 -3.6359 23 6 1.8458 1.2957 -2.4090 24 1 -0.3632 0.4389 -0.9292 25 1 -0.3633 -1.0242 0.0845 26 1 -0.3633 0.5853 0.8447 27 1 1.8935 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.3414 0.9324 2.5600 30 1 1.4390 2.1858 3.2213 31 1 3.2807 3.3302 -1.5205 32 1 2.0482 4.0136 -0.4325 33 1 2.1156 5.1261 -2.7006 34 1 0.5329 4.4001 -2.3152 35 1 3.3482 5.1331 -8.2026 36 1 0.1113 1.9525 -3.5250 37 1 1.4755 1.4098 -4.5373 38 1 2.9211 1.2098 -2.5660 39 1 1.4189 0.3037 -2.2617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568174600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:25 Heat of formation + Delta-G solvation = -88.687163 kcal Electronic energy + Delta-G solvation = -21675.937357 eV Core-core repulsion = 18424.536091 eV Total energy + Delta-G solvation = -3251.401266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34374 -39.92365 -38.22597 -35.97760 -34.71643 -34.53747 -33.20764 -31.82690 -29.45753 -28.08535 -26.06310 -24.85871 -23.34962 -22.47250 -20.89816 -20.33462 -18.64033 -18.35153 -17.68626 -17.50143 -16.65273 -16.58168 -16.06477 -15.95542 -15.58065 -15.39968 -15.23177 -14.54833 -14.42539 -13.98500 -13.92376 -13.37835 -13.26283 -13.07422 -12.71778 -12.67416 -12.65999 -12.21987 -12.13231 -11.97899 -11.86835 -11.83828 -11.65302 -10.92504 -10.71466 -10.56489 -9.78855 -9.41777 -9.00207 -8.28245 -6.83689 1.41156 1.43141 1.58560 1.71415 2.24333 2.39519 2.47323 2.80728 3.02595 3.60009 3.82213 3.93852 4.04137 4.09487 4.13224 4.33890 4.40930 4.44948 4.46499 4.64368 4.71657 4.78218 4.85678 4.92411 4.96444 5.13476 5.18701 5.22881 5.38826 5.55585 5.72897 5.92434 5.99408 6.05440 6.14644 6.39584 6.56669 6.88120 7.44137 7.45003 8.46674 8.68127 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.004758 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.989444 B = 5883.310499 C = 6443.156716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C 0.059 3.941 4 H 0.078 0.922 5 C 0.522 3.478 6 N -0.836 5.836 7 O -0.573 6.573 8 N -0.519 5.519 9 C 0.063 3.937 10 C 0.129 3.871 11 N -0.647 5.647 12 C 0.538 3.462 13 O -0.636 6.636 14 C -0.567 4.567 15 H 0.098 0.902 16 C 0.027 3.973 17 N -0.825 5.825 18 Si 0.999 3.001 19 H -0.260 1.260 20 H -0.244 1.244 21 H -0.276 1.276 22 C 0.123 3.877 23 C 0.047 3.953 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.417 0.583 30 H 0.407 0.593 31 H 0.019 0.981 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.273 0.727 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -16.544 16.649 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.053 4.053 4 H 0.095 0.905 5 C 0.307 3.693 6 N -0.401 5.401 7 O -0.451 6.451 8 N -0.245 5.245 9 C -0.066 4.066 10 C 0.005 3.995 11 N -0.384 5.384 12 C 0.345 3.655 13 O -0.524 6.524 14 C -0.603 4.603 15 H 0.115 0.885 16 C -0.188 4.188 17 N -0.455 5.455 18 Si 0.818 3.182 19 H -0.185 1.185 20 H -0.167 1.167 21 H -0.201 1.201 22 C 0.000 4.000 23 C -0.081 4.081 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.248 0.752 30 H 0.239 0.761 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.182 -15.130 16.314 22.357 hybrid contribution 1.025 0.281 -0.338 1.115 sum -1.157 -14.849 15.976 21.841 Atomic orbital electron populations 1.21687 0.95223 1.01720 1.01611 1.21744 0.96910 0.91142 1.05153 1.21814 0.98950 0.95920 0.88620 0.90466 1.20643 0.79267 0.83607 0.85799 1.43647 1.55599 1.34168 1.06723 1.90735 1.39414 1.28232 1.86741 1.61590 1.58956 1.02176 1.01735 1.22292 0.94602 0.91323 0.98397 1.21147 0.99245 0.94052 0.85050 1.48161 1.66274 1.13215 1.10735 1.18775 0.76999 0.86388 0.83343 1.90531 1.52444 1.24020 1.85398 1.21500 1.46317 1.00260 0.92203 0.88451 1.27058 0.91459 0.96077 1.04191 1.70215 1.31584 1.16064 1.27635 0.85005 0.80148 0.78137 0.74927 1.18481 1.16722 1.20096 1.21807 0.97894 0.81963 0.98345 1.22760 0.98620 0.97875 0.88849 0.93313 0.90850 0.94411 0.89116 0.87730 0.75199 0.76100 0.96311 0.89466 0.93030 0.93250 0.91671 0.92414 0.88970 0.95201 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.36 71.98 0.67 -1.80 16 2 C -0.11 -1.52 5.05 30.60 0.15 -1.37 16 3 C 0.06 1.23 2.22 44.17 0.10 1.33 16 4 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 5 C 0.52 11.88 5.65 87.66 0.50 12.37 16 6 N -0.84 -10.07 8.77 -173.54 -1.52 -11.60 16 7 O -0.57 -19.24 15.35 -3.02 -0.05 -19.29 16 8 N -0.52 -15.57 3.65 -873.44 -3.19 -18.76 16 9 C 0.06 2.32 5.26 86.38 0.45 2.78 16 10 C 0.13 5.92 6.61 86.35 0.57 6.49 16 11 N -0.65 -31.82 3.00 -822.14 -2.47 -34.29 16 12 C 0.54 32.76 7.63 86.36 0.66 33.42 16 13 O -0.64 -44.82 14.49 -4.31 -0.06 -44.88 16 14 C -0.57 -32.42 8.86 24.83 0.22 -32.20 16 15 H 0.10 4.88 5.73 -2.91 -0.02 4.87 16 16 C 0.03 1.51 5.50 85.31 0.47 1.98 16 17 N -0.83 -51.69 11.84 21.84 0.26 -51.43 16 18 Si 1.00 40.92 29.56 68.60 2.03 42.94 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 21 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 22 C 0.12 4.64 6.50 86.51 0.56 5.21 16 23 C 0.05 1.36 4.86 86.54 0.42 1.78 16 24 H 0.05 1.07 7.18 -2.39 -0.02 1.05 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 0.75 6.99 -2.39 -0.02 0.73 16 27 H 0.09 1.12 6.04 -2.39 -0.01 1.11 16 28 H 0.10 0.69 7.62 -2.38 -0.02 0.68 16 29 H 0.42 1.97 8.28 -92.71 -0.77 1.20 16 30 H 0.41 4.29 8.93 -92.71 -0.83 3.46 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 3.22 5.97 -2.39 -0.01 3.21 16 33 H 0.05 2.66 7.04 -2.39 -0.02 2.65 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.27 15.50 8.29 -92.70 -0.77 14.73 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 3.48 5.46 -2.39 -0.01 3.47 16 38 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.12 2.58 5.19 -2.39 -0.01 2.57 16 Total: -1.00 -86.79 307.04 -0.73 -87.51 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.50 Total: 19.81 kcal Atomic # 6 Polarization: 25.20 SS G_CDS: 4.78 Total: 29.98 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -6.93 Total: -116.08 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -0.11 Total: -64.17 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -86.79 -0.73 -87.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568174600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.174 kcal (2) G-P(sol) polarization free energy of solvation -86.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds