Wall clock time and date at job start Mon Mar 30 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47198 * 2 1 4 4 C 1.53002 * 109.46675 * 240.00228 * 2 1 3 5 5 C 1.50702 * 109.46699 * 176.05381 * 4 2 1 6 6 H 1.07996 * 120.00595 * 5.01087 * 5 4 2 7 7 C 1.37883 * 119.99738 * 185.01341 * 5 4 2 8 8 N 1.31514 * 119.99530 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47076 * 90.00093 * 9 7 5 11 11 H 1.48497 * 109.47033 * 210.00029 * 9 7 5 12 12 H 1.48499 * 109.47306 * 329.99934 * 9 7 5 13 13 N 1.46892 * 109.47278 * 120.00390 * 2 1 3 14 14 C 1.47193 * 111.00158 * 52.33081 * 13 2 1 15 15 C 1.52978 * 108.74149 * 167.64712 * 14 13 2 16 16 N 1.46006 * 110.04217 * 50.28141 * 15 14 13 17 17 C 1.46503 * 118.53797 * 161.81150 * 16 15 14 18 18 C 1.50702 * 109.47231 * 270.02784 * 17 16 15 19 19 N 1.34773 * 119.99781 * 179.97438 * 18 17 16 20 20 O 1.21285 * 119.99783 * 359.97438 * 18 17 16 21 21 C 1.33718 * 122.92853 * 341.83867 * 16 15 14 22 22 O 1.21284 * 118.62561 * 181.68376 * 21 16 15 23 23 C 1.46899 * 110.99976 * 289.44189 * 13 2 1 24 24 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47155 * 299.99569 * 1 2 3 26 26 H 1.08996 * 109.47449 * 59.99922 * 1 2 3 27 27 H 1.08993 * 109.47232 * 296.04947 * 4 2 1 28 28 H 1.08995 * 109.47184 * 56.05525 * 4 2 1 29 29 H 0.97001 * 119.99504 * 180.02562 * 8 7 5 30 30 H 1.08991 * 109.59729 * 287.41187 * 14 13 2 31 31 H 1.09003 * 109.59258 * 47.86367 * 14 13 2 32 32 H 1.08997 * 109.37671 * 290.10910 * 15 14 13 33 33 H 1.08998 * 109.27591 * 170.39713 * 15 14 13 34 34 H 1.09006 * 109.46710 * 30.02288 * 17 16 15 35 35 H 1.08998 * 109.47434 * 150.02331 * 17 16 15 36 36 H 0.96998 * 120.00426 * 359.97438 * 19 18 17 37 37 H 0.97002 * 119.99538 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.38899 * 293.82404 * 23 13 2 39 39 H 1.09000 * 109.38834 * 53.51190 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5438 -0.6371 -1.2992 6 1 4.0873 -0.1924 -0.4787 7 6 4.2258 -1.1279 -2.3924 8 7 5.5381 -1.0540 -2.4361 9 14 3.2858 -1.8976 -3.8113 10 1 2.9456 -0.8492 -4.8063 11 1 4.1270 -2.9377 -4.4560 12 1 2.0374 -2.5180 -3.2994 13 7 2.0197 -0.6925 1.1993 14 6 1.4039 -2.0232 1.3285 15 6 2.1621 -2.8142 2.3961 16 7 2.2925 -2.0161 3.6118 17 6 2.6131 -2.7002 4.8670 18 6 1.3368 -3.1063 5.5580 19 7 1.3866 -3.7552 6.7382 20 8 0.2650 -2.8492 5.0519 21 6 2.1318 -0.6888 3.6307 22 8 2.2886 -0.0994 4.6790 23 6 1.7648 0.1031 2.4076 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.7355 -1.7672 -1.2147 28 1 1.6200 -0.2498 -2.1378 29 1 6.0179 -1.3989 -3.2054 30 1 0.3607 -1.9159 1.6255 31 1 1.4625 -2.5473 0.3746 32 1 3.1539 -3.0677 2.0219 33 1 1.6155 -3.7299 2.6214 34 1 3.2097 -3.5875 4.6551 35 1 3.1781 -2.0283 5.5130 36 1 2.2438 -3.9612 7.1427 37 1 0.5651 -4.0162 7.1831 38 1 2.3623 1.0141 2.3737 39 1 0.7081 0.3668 2.4510 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570728119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:35 Heat of formation + Delta-G solvation = -56.466315 kcal Electronic energy + Delta-G solvation = -21588.141210 eV Core-core repulsion = 18338.137145 eV Total energy + Delta-G solvation = -3250.004065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.64709 -39.10097 -37.63409 -35.37840 -33.85267 -32.93248 -31.42902 -29.77566 -28.13112 -27.70804 -25.14001 -23.62350 -22.48536 -21.01513 -19.31673 -18.35066 -17.67740 -17.03236 -16.81376 -16.56455 -16.19353 -15.36038 -15.02180 -14.73522 -14.31473 -14.18037 -14.03398 -13.42743 -13.13049 -12.84768 -12.41745 -12.38450 -12.11083 -12.01770 -11.67267 -11.55223 -11.15230 -10.90275 -10.70165 -10.38524 -10.28953 -9.89312 -9.77077 -9.67326 -9.49202 -9.07135 -8.63090 -8.46094 -7.77776 -5.94282 -3.89162 2.49088 2.71632 2.97089 3.32638 3.41244 3.42404 3.54296 4.23660 4.50747 4.69348 4.77270 5.02401 5.07468 5.29785 5.36533 5.44006 5.49998 5.51241 5.64707 5.74827 5.81211 5.87201 6.06026 6.19852 6.33554 6.36364 6.45159 6.57086 6.67522 7.00683 7.10068 7.20449 7.47107 7.55414 7.61996 7.87642 8.08165 8.31091 8.68367 9.19837 9.68439 11.19509 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.004994 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.298824 B = 5605.543753 C = 5816.010388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.093 3.907 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.495 4.495 6 H 0.081 0.919 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.501 5.501 14 C 0.036 3.964 15 C 0.122 3.878 16 N -0.583 5.583 17 C 0.089 3.911 18 C 0.501 3.499 19 N -0.857 5.857 20 O -0.533 6.533 21 C 0.537 3.463 22 O -0.562 6.562 23 C 0.038 3.962 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.260 0.740 30 H 0.040 0.960 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.401 0.599 37 H 0.400 0.600 38 H 0.111 0.889 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 -6.349 14.062 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.015 4.015 3 H 0.100 0.900 4 C -0.042 4.042 5 C -0.533 4.533 6 H 0.099 0.901 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.226 5.226 14 C -0.092 4.092 15 C 0.000 4.000 16 N -0.315 5.315 17 C -0.039 4.039 18 C 0.285 3.715 19 N -0.422 5.422 20 O -0.409 6.409 21 C 0.326 3.674 22 O -0.440 6.440 23 C -0.093 4.093 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.229 0.771 37 H 0.230 0.770 38 H 0.129 0.871 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.584 -5.868 13.910 16.895 hybrid contribution -1.207 -0.701 -0.367 1.443 sum -8.791 -6.570 13.543 17.431 Atomic orbital electron populations 1.22582 0.99225 1.01674 1.01334 1.21775 0.90178 0.98842 0.90663 0.90044 1.19667 0.98090 0.95107 0.91302 1.21068 0.89181 1.38375 1.04654 0.90088 1.25017 0.94651 0.95978 0.98040 1.69914 1.06534 1.47709 1.30447 0.86914 0.80228 0.79480 0.83348 1.20575 1.21647 1.19360 1.62708 1.57212 1.01733 1.00906 1.22479 0.95370 0.91712 0.99670 1.21626 1.01834 0.93505 0.83075 1.47015 1.69792 1.06763 1.07916 1.21281 0.94507 0.99816 0.88253 1.21361 0.92328 0.76678 0.81142 1.43844 1.12415 1.62137 1.23839 1.90749 1.31225 1.53772 1.65119 1.20223 0.75056 0.81680 0.90426 1.90659 1.52047 1.68945 1.32366 1.22268 1.01367 0.97659 0.87996 0.92676 0.93602 0.92079 0.96625 0.96460 0.93031 0.94221 0.87712 0.89941 0.91036 0.87276 0.86535 0.77065 0.76976 0.87103 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 8.44 37.16 0.31 -2.60 16 2 C 0.09 1.73 2.27 -67.71 -0.15 1.58 16 3 H 0.08 1.56 8.07 -51.93 -0.42 1.14 16 4 C 0.00 -0.09 3.47 -27.88 -0.10 -0.19 16 5 C -0.49 -13.40 9.37 -34.44 -0.32 -13.72 16 6 H 0.08 2.42 7.96 -52.49 -0.42 2.01 16 7 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 8 N -0.91 -27.50 13.96 55.43 0.77 -26.72 16 9 Si 0.87 21.11 27.37 -169.99 -4.65 16.46 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.19 6.69 56.52 0.38 -5.81 16 13 N -0.50 -9.03 4.34 -228.13 -0.99 -10.02 16 14 C 0.04 0.58 4.38 -3.67 -0.02 0.56 16 15 C 0.12 1.73 6.57 -4.32 -0.03 1.71 16 16 N -0.58 -8.75 2.32 -175.96 -0.41 -9.16 16 17 C 0.09 1.01 5.77 -5.19 -0.03 0.98 16 18 C 0.50 6.07 8.16 -10.99 -0.09 5.98 16 19 N -0.86 -6.19 8.87 31.22 0.28 -5.91 16 20 O -0.53 -9.00 17.26 5.55 0.10 -8.90 16 21 C 0.54 9.43 7.55 -11.67 -0.09 9.34 16 22 O -0.56 -11.02 16.31 5.55 0.09 -10.93 16 23 C 0.04 0.63 5.44 -5.19 -0.03 0.61 16 24 H 0.05 0.83 6.60 -51.93 -0.34 0.48 16 25 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.02 0.35 5.65 -51.93 -0.29 0.05 16 28 H 0.02 0.38 7.29 -51.93 -0.38 0.01 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 30 H 0.04 0.62 6.96 -51.93 -0.36 0.26 16 31 H 0.10 1.74 6.07 -51.93 -0.32 1.43 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.11 0.85 8.03 -51.93 -0.42 0.43 16 35 H 0.12 1.32 7.21 -51.93 -0.37 0.95 16 36 H 0.40 1.52 8.83 -40.82 -0.36 1.16 16 37 H 0.40 2.56 8.93 -40.82 -0.36 2.20 16 38 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 39 H 0.07 1.06 6.41 -51.93 -0.33 0.73 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -35.69 313.68 -6.29 -41.98 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.57 Total: 2.58 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.64 Total: 5.91 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.35 Total: -51.82 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.19 Total: -19.84 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.65 Total: 16.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.69 -6.29 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570728119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.489 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds