Wall clock time and date at job start Mon Mar 30 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47198 * 2 1 4 4 C 1.53002 * 109.46675 * 240.00228 * 2 1 3 5 5 C 1.50702 * 109.46699 * 176.05381 * 4 2 1 6 6 H 1.07996 * 120.00595 * 5.01087 * 5 4 2 7 7 C 1.37883 * 119.99738 * 185.01341 * 5 4 2 8 8 N 1.31514 * 119.99530 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47076 * 90.00093 * 9 7 5 11 11 H 1.48497 * 109.47033 * 210.00029 * 9 7 5 12 12 H 1.48499 * 109.47306 * 329.99934 * 9 7 5 13 13 N 1.46892 * 109.47278 * 120.00390 * 2 1 3 14 14 C 1.47193 * 111.00158 * 52.33081 * 13 2 1 15 15 C 1.52978 * 108.74149 * 167.64712 * 14 13 2 16 16 N 1.46006 * 110.04217 * 50.28141 * 15 14 13 17 17 C 1.46503 * 118.53797 * 161.81150 * 16 15 14 18 18 C 1.50702 * 109.47231 * 270.02784 * 17 16 15 19 19 N 1.34773 * 119.99781 * 179.97438 * 18 17 16 20 20 O 1.21285 * 119.99783 * 359.97438 * 18 17 16 21 21 C 1.33718 * 122.92853 * 341.83867 * 16 15 14 22 22 O 1.21284 * 118.62561 * 181.68376 * 21 16 15 23 23 C 1.46899 * 110.99976 * 289.44189 * 13 2 1 24 24 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47155 * 299.99569 * 1 2 3 26 26 H 1.08996 * 109.47449 * 59.99922 * 1 2 3 27 27 H 1.08993 * 109.47232 * 296.04947 * 4 2 1 28 28 H 1.08995 * 109.47184 * 56.05525 * 4 2 1 29 29 H 0.97001 * 119.99504 * 180.02562 * 8 7 5 30 30 H 1.08991 * 109.59729 * 287.41187 * 14 13 2 31 31 H 1.09003 * 109.59258 * 47.86367 * 14 13 2 32 32 H 1.08997 * 109.37671 * 290.10910 * 15 14 13 33 33 H 1.08998 * 109.27591 * 170.39713 * 15 14 13 34 34 H 1.09006 * 109.46710 * 30.02288 * 17 16 15 35 35 H 1.08998 * 109.47434 * 150.02331 * 17 16 15 36 36 H 0.96998 * 120.00426 * 359.97438 * 19 18 17 37 37 H 0.97002 * 119.99538 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.38899 * 293.82404 * 23 13 2 39 39 H 1.09000 * 109.38834 * 53.51190 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5438 -0.6371 -1.2992 6 1 4.0873 -0.1924 -0.4787 7 6 4.2258 -1.1279 -2.3924 8 7 5.5381 -1.0540 -2.4361 9 14 3.2858 -1.8976 -3.8113 10 1 2.9456 -0.8492 -4.8063 11 1 4.1270 -2.9377 -4.4560 12 1 2.0374 -2.5180 -3.2994 13 7 2.0197 -0.6925 1.1993 14 6 1.4039 -2.0232 1.3285 15 6 2.1621 -2.8142 2.3961 16 7 2.2925 -2.0161 3.6118 17 6 2.6131 -2.7002 4.8670 18 6 1.3368 -3.1063 5.5580 19 7 1.3866 -3.7552 6.7382 20 8 0.2650 -2.8492 5.0519 21 6 2.1318 -0.6888 3.6307 22 8 2.2886 -0.0994 4.6790 23 6 1.7648 0.1031 2.4076 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.7355 -1.7672 -1.2147 28 1 1.6200 -0.2498 -2.1378 29 1 6.0179 -1.3989 -3.2054 30 1 0.3607 -1.9159 1.6255 31 1 1.4625 -2.5473 0.3746 32 1 3.1539 -3.0677 2.0219 33 1 1.6155 -3.7299 2.6214 34 1 3.2097 -3.5875 4.6551 35 1 3.1781 -2.0283 5.5130 36 1 2.2438 -3.9612 7.1427 37 1 0.5651 -4.0162 7.1831 38 1 2.3623 1.0141 2.3737 39 1 0.7081 0.3668 2.4510 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570728119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:34 Heat of formation + Delta-G solvation = -86.189133 kcal Electronic energy + Delta-G solvation = -21589.430088 eV Core-core repulsion = 18338.137145 eV Total energy + Delta-G solvation = -3251.292943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.85531 -40.16445 -39.02722 -36.64882 -34.87986 -34.66601 -33.02522 -31.05046 -29.69619 -28.96472 -26.42147 -24.94380 -24.27606 -21.97505 -20.79302 -19.53244 -18.71081 -18.61417 -18.15388 -17.92127 -17.34238 -16.59061 -16.28534 -16.10542 -15.89238 -15.45378 -15.26034 -14.71929 -14.51077 -14.41659 -13.96091 -13.81960 -13.50467 -13.33416 -13.11798 -12.82831 -12.53591 -12.46629 -12.13872 -12.06824 -11.58702 -11.41924 -11.30171 -11.12316 -10.88115 -10.67270 -10.61443 -9.79638 -9.13541 -8.11340 -6.10545 1.43177 1.44032 1.44729 1.55126 1.59388 1.84420 2.47455 2.69911 2.88254 3.25586 3.52265 3.83775 4.02265 4.05238 4.18229 4.20732 4.26115 4.38311 4.41335 4.52076 4.54731 4.58519 4.75101 4.98424 5.03776 5.09799 5.19296 5.21703 5.28800 5.55699 5.79315 5.88251 6.09721 6.18690 6.28765 6.42869 6.55257 6.99020 7.00835 7.32503 7.50496 9.05940 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.004994 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.298824 B = 5605.543753 C = 5816.010388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 H 0.068 0.932 4 C -0.001 4.001 5 C -0.490 4.490 6 H 0.037 0.963 7 C 0.000 4.000 8 N -0.959 5.959 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.244 1.244 13 N -0.522 5.522 14 C 0.036 3.964 15 C 0.124 3.876 16 N -0.582 5.582 17 C 0.083 3.917 18 C 0.500 3.500 19 N -0.832 5.832 20 O -0.587 6.587 21 C 0.528 3.472 22 O -0.591 6.591 23 C 0.042 3.958 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.117 0.883 36 H 0.420 0.580 37 H 0.408 0.592 38 H 0.103 0.897 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 -7.988 14.347 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.012 4.012 3 H 0.086 0.914 4 C -0.038 4.038 5 C -0.528 4.528 6 H 0.056 0.944 7 C -0.195 4.195 8 N -0.601 5.601 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.219 1.219 12 H -0.167 1.167 13 N -0.248 5.248 14 C -0.092 4.092 15 C 0.002 3.998 16 N -0.313 5.313 17 C -0.043 4.043 18 C 0.284 3.716 19 N -0.397 5.397 20 O -0.467 6.467 21 C 0.317 3.683 22 O -0.472 6.472 23 C -0.089 4.089 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.168 0.832 35 H 0.135 0.865 36 H 0.252 0.748 37 H 0.239 0.761 38 H 0.121 0.879 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.284 -7.557 14.250 18.611 hybrid contribution -0.589 -0.194 -0.331 0.703 sum -9.873 -7.751 13.920 18.743 Atomic orbital electron populations 1.22445 0.96227 1.02537 1.02511 1.21588 0.92470 0.97590 0.89573 0.91422 1.19608 0.94619 0.96188 0.93432 1.21297 0.91782 1.36761 1.02977 0.94434 1.25909 0.95409 0.96922 1.01268 1.70090 1.08657 1.49779 1.31599 0.85794 0.79500 0.78524 0.79528 1.19986 1.21934 1.16713 1.62622 1.58294 1.02789 1.01054 1.22501 0.95939 0.90696 1.00040 1.21665 1.01794 0.93902 0.82434 1.47068 1.68501 1.06237 1.09451 1.21598 0.94816 1.01082 0.86848 1.21419 0.91554 0.76589 0.82016 1.43616 1.13981 1.59976 1.22124 1.90730 1.32800 1.56333 1.66808 1.20327 0.75182 0.82704 0.90091 1.90633 1.53715 1.69716 1.33161 1.22191 1.01869 0.97292 0.87500 0.91913 0.92343 0.91026 0.95644 0.95813 0.93163 0.93485 0.88273 0.90295 0.88427 0.83249 0.86485 0.74804 0.76092 0.87863 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.07 8.44 71.98 0.61 -4.46 16 2 C 0.10 3.48 2.27 44.92 0.10 3.58 16 3 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 4 C 0.00 -0.04 3.47 29.85 0.10 0.06 16 5 C -0.49 -26.89 9.37 25.60 0.24 -26.65 16 6 H 0.04 2.34 7.96 -2.91 -0.02 2.31 16 7 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 8 N -0.96 -59.67 13.96 21.45 0.30 -59.37 16 9 Si 0.94 43.02 27.37 68.60 1.88 44.90 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.24 -10.06 6.69 99.48 0.67 -9.40 16 13 N -0.52 -18.63 4.34 -875.66 -3.80 -22.43 16 14 C 0.04 1.10 4.38 86.24 0.38 1.48 16 15 C 0.12 3.32 6.57 86.47 0.57 3.89 16 16 N -0.58 -16.77 2.32 -829.59 -1.92 -18.69 16 17 C 0.08 1.71 5.77 85.63 0.49 2.21 16 18 C 0.50 11.13 8.16 87.66 0.72 11.85 16 19 N -0.83 -9.83 8.87 -173.53 -1.54 -11.37 16 20 O -0.59 -19.10 17.26 -3.05 -0.05 -19.16 16 21 C 0.53 18.40 7.55 87.68 0.66 19.06 16 22 O -0.59 -23.27 16.31 -3.04 -0.05 -23.32 16 23 C 0.04 1.41 5.44 85.42 0.46 1.87 16 24 H 0.06 1.69 6.60 -2.39 -0.02 1.68 16 25 H 0.06 1.52 6.59 -2.38 -0.02 1.51 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.03 1.06 5.65 -2.39 -0.01 1.05 16 28 H 0.02 1.00 7.29 -2.39 -0.02 0.98 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.05 1.37 6.96 -2.39 -0.02 1.35 16 31 H 0.10 3.11 6.07 -2.39 -0.01 3.10 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.10 2.12 8.13 -2.39 -0.02 2.10 16 34 H 0.15 1.82 8.03 -2.38 -0.02 1.80 16 35 H 0.12 2.47 7.21 -2.39 -0.02 2.45 16 36 H 0.42 1.85 8.83 -92.71 -0.82 1.03 16 37 H 0.41 4.22 8.93 -92.71 -0.83 3.39 16 38 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.08 2.41 6.41 -2.39 -0.02 2.40 16 Total: -1.00 -79.02 313.68 -0.99 -80.01 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.60 Total: 16.11 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.80 Total: 13.32 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -6.96 Total: -111.87 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.10 Total: -42.47 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -79.02 -0.99 -80.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570728119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.180 kcal (2) G-P(sol) polarization free energy of solvation -79.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds