Wall clock time and date at job start Mon Mar 30 2020 05:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99713 * 2 1 4 4 H 1.48498 * 109.47315 * 269.99928 * 3 2 1 5 5 H 1.48498 * 109.47033 * 30.00611 * 3 2 1 6 6 H 1.48503 * 109.46719 * 150.00066 * 3 2 1 7 7 C 1.38949 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99894 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99876 * 179.97438 * 9 7 2 11 11 O 1.21301 * 120.00153 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.46852 * 180.02562 * 12 10 9 14 14 C 1.34783 * 119.99449 * 179.97438 * 13 12 10 15 15 O 1.21590 * 119.99935 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99768 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46886 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.49654 * 243.73967 * 20 19 18 22 22 C 1.53012 * 117.49602 * 175.08431 * 20 19 18 23 23 H 0.97002 * 120.00286 * 359.97438 * 1 2 3 24 24 H 0.96994 * 119.99951 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.47100 * 60.00045 * 12 10 9 26 26 H 1.08996 * 109.46609 * 299.99767 * 12 10 9 27 27 H 0.96992 * 120.00655 * 359.97438 * 13 12 10 28 28 H 0.97000 * 119.99708 * 359.97438 * 16 14 13 29 29 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 30 30 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 31 31 H 1.09001 * 109.47194 * 299.99493 * 18 17 16 32 32 H 1.08992 * 109.47399 * 59.99666 * 18 17 16 33 33 H 1.09001 * 109.47109 * 299.99380 * 19 18 17 34 34 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 35 35 H 1.08997 * 115.55341 * 29.41508 * 20 19 18 36 36 H 1.09000 * 117.49888 * 0.02562 * 21 20 19 37 37 H 1.08997 * 117.49823 * 145.01961 * 21 20 19 38 38 H 1.08998 * 117.49442 * 214.98050 * 22 20 19 39 39 H 1.08998 * 117.49828 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3703 -0.0011 13 7 6.0491 -3.7516 -0.0017 14 6 7.3743 -3.9978 -0.0023 15 8 8.1643 -3.0736 -0.0028 16 7 7.8236 -5.2685 -0.0024 17 6 9.2639 -5.5361 -0.0025 18 6 9.5017 -7.0475 -0.0032 19 6 11.0060 -7.3270 -0.0026 20 6 11.2438 -8.8384 -0.0040 21 6 11.9462 -9.4441 1.2129 22 6 12.6895 -9.3260 -0.1200 23 1 -0.4851 0.8400 0.0004 24 1 3.8648 -0.3632 -0.0014 25 1 5.9241 -1.8565 0.8889 26 1 5.9240 -1.8565 -0.8911 27 1 5.4189 -4.4889 -0.0016 28 1 7.1932 -6.0058 -0.0016 29 1 9.7151 -5.0973 0.8874 30 1 9.7149 -5.0973 -0.8925 31 1 9.0507 -7.4867 0.8867 32 1 9.0506 -7.4859 -0.8932 33 1 11.4574 -6.8879 -0.8923 34 1 11.4568 -6.8886 0.8877 35 1 10.4710 -9.4356 -0.4879 36 1 12.2384 -8.7658 2.0146 37 1 11.6356 -10.4398 1.5294 38 1 12.8676 -10.2440 -0.6799 39 1 13.4711 -8.5700 -0.1949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576250821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:14 Heat of formation + Delta-G solvation = -54.446367 kcal Electronic energy + Delta-G solvation = -19325.212121 eV Core-core repulsion = 16075.295648 eV Total energy + Delta-G solvation = -3249.916473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90727 -38.45985 -38.10166 -35.57264 -34.44602 -33.70807 -32.29705 -31.77585 -28.14109 -26.25963 -24.18376 -22.78628 -22.03866 -21.06440 -20.49317 -19.63264 -18.80050 -17.99987 -16.38840 -16.13832 -15.76387 -15.59650 -15.15706 -14.93401 -14.71200 -14.17358 -14.12123 -13.91656 -13.14206 -13.02286 -12.52759 -12.43969 -12.20157 -12.14649 -12.07737 -11.91208 -11.39084 -11.30304 -11.21848 -10.63416 -10.60955 -10.26619 -10.08952 -10.04642 -9.68996 -9.20031 -8.75769 -8.65786 -8.29642 -6.40125 -3.92696 2.77456 3.00650 3.05351 3.13356 3.35382 3.40402 3.58924 4.04279 4.16594 4.35270 4.52206 4.53868 4.63861 4.71307 4.79916 4.96263 5.15005 5.24589 5.25602 5.38446 5.44969 5.52865 5.53965 5.68139 5.72405 5.79708 5.82942 5.87060 5.91002 5.98341 6.48544 6.66075 7.05475 7.45859 8.01097 8.19405 8.45279 8.75206 8.82456 9.30684 9.64542 10.72022 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.061852 B = 0.002411 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.583853 B =11609.107244 C =11958.779035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.126 3.874 13 N -0.725 5.725 14 C 0.705 3.295 15 O -0.600 6.600 16 N -0.750 5.750 17 C 0.139 3.861 18 C -0.129 4.129 19 C -0.086 4.086 20 C -0.152 4.152 21 C -0.182 4.182 22 C -0.183 4.183 23 H 0.275 0.725 24 H 0.375 0.625 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.408 0.592 28 H 0.397 0.603 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.787 -13.570 0.243 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.383 5.383 14 C 0.404 3.596 15 O -0.479 6.479 16 N -0.406 5.406 17 C 0.015 3.985 18 C -0.167 4.167 19 C -0.124 4.124 20 C -0.170 4.170 21 C -0.219 4.219 22 C -0.220 4.220 23 H 0.086 0.914 24 H 0.208 0.792 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.245 0.755 28 H 0.231 0.769 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.870 -13.264 0.244 25.579 hybrid contribution -0.079 0.677 0.025 0.682 sum 21.791 -12.587 0.268 25.166 Atomic orbital electron populations 1.69617 1.05711 1.27803 1.48240 1.25067 0.95540 0.98182 0.97151 0.86667 0.79928 0.83739 0.79145 1.19388 1.19999 1.19191 1.19440 0.78972 0.96786 1.48645 0.86099 1.42114 1.07683 1.06145 1.65485 1.19671 0.88121 0.84856 0.84885 1.90534 1.69286 1.30929 1.55662 1.20797 0.93273 0.82962 1.03219 1.44755 1.05244 1.09279 1.79043 1.15857 0.82530 0.83258 0.77955 1.90900 1.55224 1.43219 1.58523 1.45054 1.08084 1.06260 1.81182 1.21158 0.80014 0.95068 1.02270 1.21780 0.96802 0.95046 1.03034 1.21079 0.95543 0.93156 1.02603 1.22347 0.95684 0.96359 1.02659 1.23063 1.04649 1.02437 0.91772 1.22986 0.95125 1.03160 1.00754 0.91399 0.79220 0.89904 0.89900 0.75480 0.76914 0.91768 0.91733 0.91056 0.91107 0.91146 0.91407 0.87730 0.88734 0.88965 0.88919 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.02 13.96 55.50 0.77 -24.24 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.07 27.74 -169.99 -4.71 14.36 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 7 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 9 N -0.58 -13.48 5.09 -10.96 -0.06 -13.54 16 10 C 0.44 9.71 7.85 -10.99 -0.09 9.62 16 11 O -0.58 -14.67 15.24 5.54 0.08 -14.59 16 12 C 0.13 2.23 6.15 -5.19 -0.03 2.20 16 13 N -0.73 -11.82 5.53 -66.41 -0.37 -12.19 16 14 C 0.70 11.19 8.57 -86.91 -0.74 10.45 16 15 O -0.60 -11.53 16.34 5.29 0.09 -11.44 16 16 N -0.75 -8.67 5.56 -65.22 -0.36 -9.03 16 17 C 0.14 1.36 5.67 -4.04 -0.02 1.34 16 18 C -0.13 -0.88 5.29 -26.73 -0.14 -1.02 16 19 C -0.09 -0.54 5.49 -26.73 -0.15 -0.69 16 20 C -0.15 -0.94 5.73 -90.61 -0.52 -1.46 16 21 C -0.18 -1.09 10.18 -26.69 -0.27 -1.36 16 22 C -0.18 -1.07 10.26 -26.69 -0.27 -1.35 16 23 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.41 6.44 7.45 -40.82 -0.30 6.14 16 28 H 0.40 3.64 8.49 -40.82 -0.35 3.29 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.43 7.88 -51.93 -0.41 0.02 16 35 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.09 0.55 8.03 -51.93 -0.42 0.13 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -33.01 333.85 -7.93 -40.93 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -5.91 Total: 14.58 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -2.49 Total: 10.13 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.01 Total: -59.00 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: 0.17 Total: -26.03 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.01 -7.93 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576250821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.514 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds