Wall clock time and date at job start Mon Mar 30 2020 05:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99713 * 2 1 4 4 H 1.48498 * 109.47315 * 269.99928 * 3 2 1 5 5 H 1.48498 * 109.47033 * 30.00611 * 3 2 1 6 6 H 1.48503 * 109.46719 * 150.00066 * 3 2 1 7 7 C 1.38949 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99894 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99876 * 179.97438 * 9 7 2 11 11 O 1.21301 * 120.00153 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.46852 * 180.02562 * 12 10 9 14 14 C 1.34783 * 119.99449 * 179.97438 * 13 12 10 15 15 O 1.21590 * 119.99935 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99768 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46886 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.49654 * 243.73967 * 20 19 18 22 22 C 1.53012 * 117.49602 * 175.08431 * 20 19 18 23 23 H 0.97002 * 120.00286 * 359.97438 * 1 2 3 24 24 H 0.96994 * 119.99951 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.47100 * 60.00045 * 12 10 9 26 26 H 1.08996 * 109.46609 * 299.99767 * 12 10 9 27 27 H 0.96992 * 120.00655 * 359.97438 * 13 12 10 28 28 H 0.97000 * 119.99708 * 359.97438 * 16 14 13 29 29 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 30 30 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 31 31 H 1.09001 * 109.47194 * 299.99493 * 18 17 16 32 32 H 1.08992 * 109.47399 * 59.99666 * 18 17 16 33 33 H 1.09001 * 109.47109 * 299.99380 * 19 18 17 34 34 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 35 35 H 1.08997 * 115.55341 * 29.41508 * 20 19 18 36 36 H 1.09000 * 117.49888 * 0.02562 * 21 20 19 37 37 H 1.08997 * 117.49823 * 145.01961 * 21 20 19 38 38 H 1.08998 * 117.49442 * 214.98050 * 22 20 19 39 39 H 1.08998 * 117.49828 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3703 -0.0011 13 7 6.0491 -3.7516 -0.0017 14 6 7.3743 -3.9978 -0.0023 15 8 8.1643 -3.0736 -0.0028 16 7 7.8236 -5.2685 -0.0024 17 6 9.2639 -5.5361 -0.0025 18 6 9.5017 -7.0475 -0.0032 19 6 11.0060 -7.3270 -0.0026 20 6 11.2438 -8.8384 -0.0040 21 6 11.9462 -9.4441 1.2129 22 6 12.6895 -9.3260 -0.1200 23 1 -0.4851 0.8400 0.0004 24 1 3.8648 -0.3632 -0.0014 25 1 5.9241 -1.8565 0.8889 26 1 5.9240 -1.8565 -0.8911 27 1 5.4189 -4.4889 -0.0016 28 1 7.1932 -6.0058 -0.0016 29 1 9.7151 -5.0973 0.8874 30 1 9.7149 -5.0973 -0.8925 31 1 9.0507 -7.4867 0.8867 32 1 9.0506 -7.4859 -0.8932 33 1 11.4574 -6.8879 -0.8923 34 1 11.4568 -6.8886 0.8877 35 1 10.4710 -9.4356 -0.4879 36 1 12.2384 -8.7658 2.0146 37 1 11.6356 -10.4398 1.5294 38 1 12.8676 -10.2440 -0.6799 39 1 13.4711 -8.5700 -0.1949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576250821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:13 Heat of formation + Delta-G solvation = -79.305383 kcal Electronic energy + Delta-G solvation = -19326.290089 eV Core-core repulsion = 16075.295648 eV Total energy + Delta-G solvation = -3250.994441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22035 -40.15359 -38.66465 -36.54025 -36.19045 -35.27883 -33.83600 -33.07315 -29.54285 -27.31790 -25.90331 -23.24208 -22.72979 -22.06204 -21.46156 -21.21136 -20.56377 -19.43223 -17.56001 -17.34328 -17.09661 -16.73592 -16.50650 -16.17807 -15.68229 -15.51992 -15.39114 -14.90248 -14.81159 -14.31536 -13.99370 -13.96369 -13.47336 -13.09385 -12.95412 -12.76662 -12.44121 -12.36421 -11.99680 -11.95330 -11.88229 -11.57503 -11.47032 -11.03637 -10.71862 -10.64809 -10.42419 -10.31347 -9.79761 -8.45083 -6.07066 1.31962 1.34831 1.44468 1.61932 1.79423 2.12434 2.21105 2.80072 2.94757 3.11230 3.32126 3.70983 3.99558 4.03202 4.06973 4.15692 4.20488 4.40970 4.42734 4.45583 4.65606 4.78695 4.82715 4.87228 4.90776 5.09521 5.22240 5.28207 5.30142 5.33617 5.46934 5.49101 5.54487 5.88688 5.97304 6.49374 6.78579 7.03559 7.29173 7.53536 7.78720 8.71259 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.061852 B = 0.002411 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.583853 B =11609.107244 C =11958.779035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.727 5.727 14 C 0.703 3.297 15 O -0.632 6.632 16 N -0.734 5.734 17 C 0.138 3.862 18 C -0.116 4.116 19 C -0.083 4.083 20 C -0.157 4.157 21 C -0.186 4.186 22 C -0.185 4.185 23 H 0.281 0.719 24 H 0.392 0.608 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.410 0.590 28 H 0.411 0.589 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.223 -13.006 0.237 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.009 3.991 13 N -0.385 5.385 14 C 0.403 3.597 15 O -0.514 6.514 16 N -0.390 5.390 17 C 0.014 3.986 18 C -0.154 4.154 19 C -0.121 4.121 20 C -0.175 4.175 21 C -0.223 4.223 22 C -0.222 4.222 23 H 0.091 0.909 24 H 0.228 0.772 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.248 0.752 28 H 0.247 0.753 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 24.331 -12.756 0.240 27.473 hybrid contribution -0.843 0.335 0.024 0.907 sum 23.488 -12.420 0.264 26.571 Atomic orbital electron populations 1.69778 1.08017 1.29450 1.49292 1.26071 0.96445 1.02611 0.95730 0.85442 0.79573 0.77013 0.80080 1.18075 1.19838 1.15596 1.19032 0.80958 0.95272 1.50763 0.91827 1.41917 1.06128 1.07433 1.66297 1.20510 0.90046 0.83859 0.82249 1.90523 1.70812 1.32311 1.56406 1.20688 0.89171 0.84266 1.04927 1.44719 1.05626 1.08783 1.79393 1.15971 0.81860 0.84135 0.77759 1.90878 1.55816 1.44582 1.60157 1.45019 1.09222 1.05234 1.79552 1.21289 0.78620 0.97061 1.01597 1.21688 0.97286 0.92707 1.03726 1.21047 0.95062 0.93401 1.02624 1.22362 0.96031 0.96153 1.02932 1.23127 1.04675 1.02701 0.91823 1.23057 0.94976 1.03461 1.00721 0.90927 0.77210 0.88132 0.88039 0.75235 0.75347 0.92506 0.92389 0.90471 0.90262 0.91098 0.91504 0.87395 0.88725 0.88532 0.88360 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.96 21.66 0.30 -54.06 16 2 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 3 Si 0.96 38.13 27.74 68.60 1.90 40.03 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 7 C -0.33 -18.81 10.16 84.04 0.85 -17.95 16 8 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 9 N -0.58 -26.59 5.09 -306.97 -1.56 -28.15 16 10 C 0.45 19.45 7.85 87.66 0.69 20.14 16 11 O -0.61 -31.57 15.24 -3.09 -0.05 -31.62 16 12 C 0.14 4.59 6.15 85.63 0.53 5.11 16 13 N -0.73 -22.49 5.53 -482.28 -2.67 -25.15 16 14 C 0.70 21.08 8.57 179.05 1.53 22.61 16 15 O -0.63 -23.20 16.34 -4.00 -0.07 -23.26 16 16 N -0.73 -15.62 5.56 -478.52 -2.66 -18.28 16 17 C 0.14 2.47 5.67 86.38 0.49 2.96 16 18 C -0.12 -1.34 5.29 30.59 0.16 -1.18 16 19 C -0.08 -0.91 5.49 30.59 0.17 -0.74 16 20 C -0.16 -1.67 5.73 -10.79 -0.06 -1.73 16 21 C -0.19 -1.96 10.18 30.62 0.31 -1.64 16 22 C -0.19 -1.89 10.26 30.62 0.31 -1.58 16 23 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.39 15.16 5.76 -92.71 -0.53 14.63 16 25 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 26 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.41 12.48 7.45 -92.71 -0.69 11.79 16 28 H 0.41 6.65 8.49 -92.71 -0.79 5.86 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.75 7.88 -2.39 -0.02 0.73 16 35 H 0.11 1.08 8.08 -2.39 -0.02 1.06 16 36 H 0.09 0.98 8.03 -2.39 -0.02 0.96 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.54 333.85 -0.34 -73.88 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -0.99 Total: 40.61 kcal Atomic # 6 Polarization: 20.55 SS G_CDS: 5.45 Total: 26.00 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -6.59 Total: -125.64 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -0.11 Total: -54.88 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.03 kcal Total: -73.54 -0.34 -73.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576250821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.425 kcal (2) G-P(sol) polarization free energy of solvation -73.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds