Wall clock time and date at job start Mon Mar 30 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 113.01119 * 2 1 4 4 C 1.53937 * 113.72984 * 131.63352 * 2 1 3 5 5 N 1.47955 * 86.18157 * 90.63839 * 4 2 1 6 6 C 1.46898 * 111.00208 * 137.57726 * 5 4 2 7 7 C 1.50704 * 109.47447 * 170.00164 * 6 5 4 8 8 O 1.21287 * 119.99690 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00067 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99913 * 180.02562 * 9 7 6 11 11 C 1.50690 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.21300 * 120.00100 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00182 * 180.02562 * 11 10 9 14 14 C 1.37100 * 120.00125 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00011 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99841 * 179.97438 * 14 13 11 17 17 N 1.31410 * 120.00153 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99663 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47240 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46895 * 119.99941 * 18 16 14 21 21 H 1.48500 * 109.46894 * 239.99716 * 18 16 14 22 22 C 1.47967 * 90.76348 * 24.68862 * 5 4 2 23 23 H 1.09002 * 109.47399 * 288.37000 * 1 2 3 24 24 H 1.09008 * 109.46853 * 48.36705 * 1 2 3 25 25 H 1.08998 * 109.47327 * 168.36666 * 1 2 3 26 26 H 1.09003 * 109.47120 * 191.62881 * 3 2 1 27 27 H 1.08996 * 109.47121 * 311.63551 * 3 2 1 28 28 H 1.08998 * 109.46969 * 71.63783 * 3 2 1 29 29 H 1.09005 * 113.75745 * 204.95562 * 4 2 1 30 30 H 1.08996 * 113.76539 * 336.32248 * 4 2 1 31 31 H 1.09002 * 109.47503 * 290.00559 * 6 5 4 32 32 H 1.09001 * 109.46828 * 50.00321 * 6 5 4 33 33 H 0.96992 * 119.99963 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47005 * 300.00090 * 10 9 7 35 35 H 1.09001 * 109.47219 * 59.99787 * 10 9 7 36 36 H 0.97003 * 119.99960 * 359.97438 * 13 11 10 37 37 H 0.96996 * 120.00048 * 180.02562 * 17 16 14 38 38 H 1.08994 * 113.76237 * 220.99251 * 22 5 4 39 39 H 1.09006 * 113.85968 * 89.63644 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1495 -0.9362 1.0533 5 7 2.1249 -1.9752 0.0002 6 6 3.3702 -2.7544 0.0002 7 6 3.2160 -3.9479 -0.9070 8 8 2.1717 -4.1311 -1.4959 9 7 4.2386 -4.8117 -1.0638 10 6 4.0889 -5.9717 -1.9461 11 6 5.3659 -6.7717 -1.9451 12 8 6.3086 -6.4085 -1.2737 13 7 5.4610 -7.8903 -2.6909 14 6 6.6226 -8.6185 -2.6895 15 1 7.4617 -8.2955 -2.0910 16 6 6.7203 -9.7720 -3.4580 17 7 5.6993 -10.1652 -4.1857 18 14 8.3034 -10.7638 -3.4566 19 1 9.2942 -10.1133 -2.5621 20 1 8.0253 -12.1392 -2.9710 21 1 8.8491 -10.8268 -4.8362 22 6 2.1495 -0.9363 -1.0531 23 1 -0.3634 0.3239 0.9753 24 1 -0.3633 0.6828 -0.7682 25 1 -0.3634 -1.0065 -0.2072 26 1 3.1966 1.3492 -0.2072 27 1 1.6417 2.0096 -0.7680 28 1 1.9721 1.8692 0.9753 29 1 3.1542 -0.6469 1.3613 30 1 1.4899 -1.1482 1.8947 31 1 4.1894 -2.1302 -0.3567 32 1 3.5865 -3.0936 1.0132 33 1 5.0736 -4.6654 -0.5925 34 1 3.2693 -6.5957 -1.5899 35 1 3.8733 -5.6321 -2.9592 36 1 4.7072 -8.1806 -3.2280 37 1 5.7674 -10.9707 -4.7219 38 1 1.4900 -1.1482 -1.8946 39 1 3.1536 -0.6458 -1.3625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579142024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:40 Heat of formation + Delta-G solvation = -44.376592 kcal Electronic energy + Delta-G solvation = -20060.319735 eV Core-core repulsion = 16810.839920 eV Total energy + Delta-G solvation = -3249.479815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70060 -39.16654 -37.98596 -34.41507 -33.61665 -33.29390 -31.38828 -29.13521 -27.66967 -26.97798 -26.37958 -24.52230 -22.63418 -20.10666 -19.55063 -18.68483 -18.10523 -17.17749 -16.11974 -15.97802 -15.55324 -15.13800 -14.92235 -14.87135 -14.38568 -14.04321 -13.83823 -13.45433 -13.41800 -13.06585 -12.79338 -12.33287 -12.21210 -12.16028 -11.89815 -11.64201 -11.49136 -11.28416 -11.14327 -10.71140 -10.52992 -10.41563 -10.33161 -9.65387 -9.65076 -8.88195 -8.73459 -8.63451 -8.10766 -6.52090 -3.94136 2.89806 3.09812 3.19109 3.23062 3.29842 3.73724 3.87234 4.06935 4.12486 4.43158 4.84089 4.87028 4.89088 4.94647 5.06151 5.14776 5.16689 5.24905 5.32426 5.37366 5.45762 5.57399 5.66496 5.78381 5.84623 5.88404 5.93255 5.97984 6.07790 6.14091 6.18894 6.71350 6.79812 7.45574 7.87235 7.91890 8.44171 8.54366 9.04075 9.38949 9.86748 10.64924 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.060853 B = 0.002801 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.018291 B = 9993.080496 C =10222.681386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.094 4.094 3 C -0.138 4.138 4 C 0.007 3.993 5 N -0.454 5.454 6 C 0.001 3.999 7 C 0.513 3.487 8 O -0.530 6.530 9 N -0.712 5.712 10 C 0.111 3.889 11 C 0.429 3.571 12 O -0.598 6.598 13 N -0.550 5.550 14 C -0.305 4.305 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.012 3.988 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.409 0.591 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.091 0.909 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 18.644 7.412 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.094 4.094 3 C -0.196 4.196 4 C -0.122 4.122 5 N -0.176 5.176 6 C -0.131 4.131 7 C 0.297 3.703 8 O -0.406 6.406 9 N -0.367 5.367 10 C -0.017 4.017 11 C 0.214 3.786 12 O -0.485 6.485 13 N -0.184 5.184 14 C -0.434 4.434 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.535 5.535 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.117 4.117 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.246 0.754 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.742 18.024 7.287 20.926 hybrid contribution 1.541 -0.313 -0.201 1.585 sum -6.201 17.711 7.085 20.058 Atomic orbital electron populations 1.21527 0.92207 1.02861 1.01471 1.22271 0.96912 0.94151 0.96113 1.21780 1.00402 0.95390 1.02038 1.24146 1.00529 0.91342 0.96174 1.68367 1.31306 1.14182 1.03750 1.22576 0.93777 0.95701 1.00997 1.20336 0.83594 0.83770 0.82569 1.90685 1.27544 1.74783 1.47543 1.45718 1.17369 1.25580 1.48082 1.20914 0.97761 0.87828 0.95188 1.19767 0.89247 0.84216 0.85350 1.90491 1.40022 1.71278 1.46720 1.41813 1.15795 1.21104 1.39728 1.19780 0.92783 1.04573 1.26264 0.87636 1.25336 0.99033 0.97492 0.95914 1.69622 1.30571 1.24989 1.28293 0.85754 0.80998 0.79147 0.78171 1.19139 1.20593 1.20607 1.24192 1.00547 0.90645 0.96269 0.92521 0.92556 0.91181 0.92610 0.92226 0.92265 0.91172 0.89177 0.90960 0.87970 0.75351 0.89920 0.89997 0.77023 0.91624 0.89030 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.14 37.16 0.34 -0.68 16 2 C -0.09 -0.79 1.42 -153.58 -0.22 -1.01 16 3 C -0.14 -0.91 9.22 37.16 0.34 -0.57 16 4 C 0.01 0.06 7.09 -2.77 -0.02 0.04 16 5 N -0.45 -5.44 5.51 -239.40 -1.32 -6.76 16 6 C 0.00 0.02 5.28 -4.97 -0.03 -0.01 16 7 C 0.51 8.27 7.87 -10.99 -0.09 8.18 16 8 O -0.53 -10.39 16.43 5.55 0.09 -10.30 16 9 N -0.71 -11.96 5.53 -61.47 -0.34 -12.30 16 10 C 0.11 2.09 6.15 -5.19 -0.03 2.05 16 11 C 0.43 9.91 7.85 -10.99 -0.09 9.82 16 12 O -0.60 -15.35 15.24 5.54 0.08 -15.27 16 13 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 14 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 15 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16 16 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 17 N -0.89 -24.02 13.05 55.50 0.72 -23.30 16 18 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.01 0.13 7.03 -2.76 -0.02 0.11 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.07 0.71 7.98 -51.93 -0.41 0.29 16 26 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.52 7.88 -51.93 -0.41 0.11 16 30 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.07 0.73 7.38 -51.93 -0.38 0.34 16 32 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.41 6.63 7.44 -40.82 -0.30 6.33 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.07 0.66 7.30 -51.93 -0.38 0.28 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -31.80 330.57 -6.84 -38.64 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -5.93 Total: 12.52 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.05 Total: 10.04 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.99 Total: -56.16 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: 0.18 Total: -25.57 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.80 -6.84 -38.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579142024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.737 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds