Wall clock time and date at job start Mon Mar 30 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 113.01119 * 2 1 4 4 C 1.53937 * 113.72984 * 131.63352 * 2 1 3 5 5 N 1.47955 * 86.18157 * 90.63839 * 4 2 1 6 6 C 1.46898 * 111.00208 * 137.57726 * 5 4 2 7 7 C 1.50704 * 109.47447 * 170.00164 * 6 5 4 8 8 O 1.21287 * 119.99690 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00067 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99913 * 180.02562 * 9 7 6 11 11 C 1.50690 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.21300 * 120.00100 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00182 * 180.02562 * 11 10 9 14 14 C 1.37100 * 120.00125 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00011 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99841 * 179.97438 * 14 13 11 17 17 N 1.31410 * 120.00153 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99663 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47240 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46895 * 119.99941 * 18 16 14 21 21 H 1.48500 * 109.46894 * 239.99716 * 18 16 14 22 22 C 1.47967 * 90.76348 * 24.68862 * 5 4 2 23 23 H 1.09002 * 109.47399 * 288.37000 * 1 2 3 24 24 H 1.09008 * 109.46853 * 48.36705 * 1 2 3 25 25 H 1.08998 * 109.47327 * 168.36666 * 1 2 3 26 26 H 1.09003 * 109.47120 * 191.62881 * 3 2 1 27 27 H 1.08996 * 109.47121 * 311.63551 * 3 2 1 28 28 H 1.08998 * 109.46969 * 71.63783 * 3 2 1 29 29 H 1.09005 * 113.75745 * 204.95562 * 4 2 1 30 30 H 1.08996 * 113.76539 * 336.32248 * 4 2 1 31 31 H 1.09002 * 109.47503 * 290.00559 * 6 5 4 32 32 H 1.09001 * 109.46828 * 50.00321 * 6 5 4 33 33 H 0.96992 * 119.99963 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47005 * 300.00090 * 10 9 7 35 35 H 1.09001 * 109.47219 * 59.99787 * 10 9 7 36 36 H 0.97003 * 119.99960 * 359.97438 * 13 11 10 37 37 H 0.96996 * 120.00048 * 180.02562 * 17 16 14 38 38 H 1.08994 * 113.76237 * 220.99251 * 22 5 4 39 39 H 1.09006 * 113.85968 * 89.63644 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1495 -0.9362 1.0533 5 7 2.1249 -1.9752 0.0002 6 6 3.3702 -2.7544 0.0002 7 6 3.2160 -3.9479 -0.9070 8 8 2.1717 -4.1311 -1.4959 9 7 4.2386 -4.8117 -1.0638 10 6 4.0889 -5.9717 -1.9461 11 6 5.3659 -6.7717 -1.9451 12 8 6.3086 -6.4085 -1.2737 13 7 5.4610 -7.8903 -2.6909 14 6 6.6226 -8.6185 -2.6895 15 1 7.4617 -8.2955 -2.0910 16 6 6.7203 -9.7720 -3.4580 17 7 5.6993 -10.1652 -4.1857 18 14 8.3034 -10.7638 -3.4566 19 1 9.2942 -10.1133 -2.5621 20 1 8.0253 -12.1392 -2.9710 21 1 8.8491 -10.8268 -4.8362 22 6 2.1495 -0.9363 -1.0531 23 1 -0.3634 0.3239 0.9753 24 1 -0.3633 0.6828 -0.7682 25 1 -0.3634 -1.0065 -0.2072 26 1 3.1966 1.3492 -0.2072 27 1 1.6417 2.0096 -0.7680 28 1 1.9721 1.8692 0.9753 29 1 3.1542 -0.6469 1.3613 30 1 1.4899 -1.1482 1.8947 31 1 4.1894 -2.1302 -0.3567 32 1 3.5865 -3.0936 1.0132 33 1 5.0736 -4.6654 -0.5925 34 1 3.2693 -6.5957 -1.5899 35 1 3.8733 -5.6321 -2.9592 36 1 4.7072 -8.1806 -3.2280 37 1 5.7674 -10.9707 -4.7219 38 1 1.4900 -1.1482 -1.8946 39 1 3.1536 -0.6458 -1.3625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579142024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:39 Heat of formation + Delta-G solvation = -69.569866 kcal Electronic energy + Delta-G solvation = -20061.412198 eV Core-core repulsion = 16810.839920 eV Total energy + Delta-G solvation = -3250.572277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58134 -40.63179 -39.64708 -36.25378 -35.24736 -34.09196 -33.38906 -30.32766 -28.42006 -28.18748 -27.11867 -26.34013 -23.59078 -21.41009 -21.32976 -20.08392 -19.39677 -18.53686 -17.36750 -17.17708 -17.05780 -16.46247 -16.30357 -16.06393 -15.83711 -15.47358 -15.28542 -14.63714 -14.27384 -14.01659 -13.88616 -13.73916 -13.56573 -13.36710 -12.98074 -12.92501 -12.76507 -12.46234 -12.33333 -12.11760 -11.94970 -11.59438 -11.42952 -11.19925 -10.93407 -10.57934 -10.19771 -10.09384 -9.69751 -8.52682 -6.03141 1.34086 1.42088 1.56316 1.63087 1.89098 1.96321 2.30042 3.00377 3.13729 3.14408 3.38983 3.68898 3.86093 4.09820 4.20364 4.22798 4.28563 4.35009 4.41446 4.43157 4.48533 4.67159 4.79438 4.85152 4.88892 5.06891 5.16634 5.17894 5.28466 5.32469 5.37217 5.37641 5.53460 5.90167 6.00081 6.44964 6.57646 7.01713 7.23088 7.42683 7.92094 8.64584 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.060853 B = 0.002801 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.018291 B = 9993.080496 C =10222.681386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 C -0.134 4.134 4 C 0.012 3.988 5 N -0.486 5.486 6 C 0.008 3.992 7 C 0.512 3.488 8 O -0.568 6.568 9 N -0.711 5.711 10 C 0.123 3.877 11 C 0.434 3.566 12 O -0.623 6.623 13 N -0.560 5.560 14 C -0.336 4.336 15 H 0.087 0.913 16 C -0.012 4.012 17 N -0.917 5.917 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.006 3.994 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.414 0.586 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.398 0.602 37 H 0.280 0.720 38 H 0.068 0.932 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 19.752 8.235 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.087 4.087 3 C -0.191 4.191 4 C -0.116 4.116 5 N -0.208 5.208 6 C -0.123 4.123 7 C 0.299 3.701 8 O -0.447 6.447 9 N -0.366 5.366 10 C -0.005 4.005 11 C 0.221 3.779 12 O -0.511 6.511 13 N -0.196 5.196 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.821 3.179 19 H -0.193 1.193 20 H -0.196 1.196 21 H -0.196 1.196 22 C -0.123 4.123 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.252 0.748 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.214 19.153 8.119 22.018 hybrid contribution 1.314 -0.620 -0.448 1.520 sum -5.900 18.532 7.670 20.907 Atomic orbital electron populations 1.21508 0.92413 1.01566 1.02445 1.22231 0.96746 0.94936 0.94777 1.21746 1.00503 0.93997 1.02874 1.24223 1.01728 0.90037 0.95589 1.68333 1.31598 1.15542 1.05365 1.22601 0.94752 0.94110 1.00826 1.21148 0.82456 0.84246 0.82253 1.90668 1.28966 1.75785 1.49241 1.45750 1.17949 1.25123 1.47806 1.20716 0.95244 0.88216 0.96348 1.20408 0.90152 0.83580 0.83787 1.90467 1.41475 1.71787 1.47411 1.41873 1.15473 1.21755 1.40473 1.19784 0.93305 1.06006 1.27478 0.89511 1.26161 1.02191 0.97884 0.95007 1.69688 1.32075 1.25489 1.28476 0.84793 0.77004 0.77667 0.78406 1.19343 1.19618 1.19607 1.24231 1.00883 0.91211 0.95931 0.91211 0.91869 0.93631 0.92164 0.91931 0.91071 0.89210 0.88873 0.88634 0.85987 0.74835 0.89244 0.89171 0.76758 0.91047 0.91335 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.14 71.98 0.66 -1.22 16 2 C -0.09 -1.29 1.42 -51.54 -0.07 -1.36 16 3 C -0.13 -1.41 9.22 71.98 0.66 -0.74 16 4 C 0.01 0.19 7.09 86.41 0.61 0.80 16 5 N -0.49 -11.00 5.51 -911.34 -5.02 -16.02 16 6 C 0.01 0.18 5.28 85.56 0.45 0.64 16 7 C 0.51 16.07 7.87 87.66 0.69 16.76 16 8 O -0.57 -22.30 16.43 -3.05 -0.05 -22.35 16 9 N -0.71 -23.31 5.53 -466.78 -2.58 -25.89 16 10 C 0.12 4.59 6.15 85.63 0.53 5.12 16 11 C 0.43 20.17 7.85 87.65 0.69 20.86 16 12 O -0.62 -32.16 15.24 -3.09 -0.05 -32.20 16 13 N -0.56 -28.42 5.29 -306.98 -1.62 -30.04 16 14 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 15 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 16 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 17 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 18 Si 1.00 41.80 29.55 68.60 2.03 43.83 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 C 0.01 0.12 7.03 86.40 0.61 0.73 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.04 0.92 7.98 -2.39 -0.02 0.90 16 26 H 0.06 0.60 7.94 -2.39 -0.02 0.58 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 1.03 7.88 -2.38 -0.02 1.01 16 30 H 0.09 1.36 8.10 -2.39 -0.02 1.34 16 31 H 0.10 1.65 7.38 -2.39 -0.02 1.64 16 32 H 0.12 2.18 8.08 -2.39 -0.02 2.16 16 33 H 0.41 12.99 7.44 -92.71 -0.69 12.30 16 34 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 37 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 38 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.08 1.39 7.30 -2.38 -0.02 1.37 16 Total: -1.00 -68.22 330.57 -1.27 -69.48 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.36 Total: 38.37 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 6.11 Total: 23.62 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -8.94 Total: -120.74 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -0.10 Total: -54.55 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -68.22 -1.27 -69.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579142024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.087 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds