Wall clock time and date at job start Mon Mar 30 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.64490 * 2 1 4 4 C 1.54599 * 110.72060 * 236.84742 * 2 1 3 5 5 C 1.53997 * 105.13650 * 219.68381 * 4 2 1 6 6 N 1.47897 * 107.05808 * 358.77883 * 5 4 2 7 7 C 1.46906 * 110.99827 * 145.84479 * 6 5 4 8 8 C 1.50697 * 109.46638 * 183.35780 * 7 6 5 9 9 O 1.21279 * 120.00579 * 353.86255 * 8 7 6 10 10 N 1.34783 * 119.99679 * 173.86551 * 8 7 6 11 11 C 1.46497 * 120.00244 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47428 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99754 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.37095 * 119.99748 * 180.02562 * 14 12 11 16 16 H 1.08008 * 119.99950 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99943 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99701 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00012 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47060 * 89.99765 * 19 17 15 21 21 H 1.48494 * 109.46977 * 210.00322 * 19 17 15 22 22 H 1.48507 * 109.47006 * 329.99942 * 19 17 15 23 23 C 1.48526 * 105.82239 * 25.33001 * 6 5 4 24 24 H 1.08997 * 109.47351 * 181.69809 * 1 2 3 25 25 H 1.08999 * 109.47410 * 61.69627 * 1 2 3 26 26 H 1.09001 * 109.46595 * 301.69647 * 1 2 3 27 27 H 1.08993 * 110.30730 * 338.60076 * 4 2 1 28 28 H 1.09002 * 110.30556 * 100.67047 * 4 2 1 29 29 H 1.08997 * 109.91489 * 118.13374 * 5 4 2 30 30 H 1.08998 * 109.91278 * 239.22288 * 5 4 2 31 31 H 1.08997 * 109.46795 * 303.36011 * 7 6 5 32 32 H 1.08996 * 109.47010 * 63.36002 * 7 6 5 33 33 H 0.97004 * 119.99814 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.47532 * 300.00367 * 11 10 8 35 35 H 1.09003 * 109.47171 * 59.99919 * 11 10 8 36 36 H 0.96992 * 119.99988 * 0.02562 * 14 12 11 37 37 H 0.97000 * 119.99441 * 180.02562 * 18 17 15 38 38 H 1.09009 * 110.66686 * 202.36110 * 23 6 5 39 39 H 1.08998 * 110.66906 * 79.23301 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0770 -0.7908 -1.2106 5 6 3.2893 -1.5698 -0.6675 6 7 3.4318 -1.2106 0.7601 7 6 3.9212 -2.3525 1.5440 8 6 3.9750 -1.9747 3.0019 9 8 3.7463 -0.8331 3.3414 10 7 4.2773 -2.9056 3.9285 11 6 4.3302 -2.5384 5.3457 12 6 4.6861 -3.7514 6.1661 13 8 4.8772 -4.8177 5.6205 14 7 4.7919 -3.6514 7.5060 15 6 5.1162 -4.7548 8.2522 16 1 5.2873 -5.7041 7.7663 17 6 5.2248 -4.6518 9.6336 18 7 5.5362 -5.7093 10.3488 19 14 4.9283 -3.0101 10.4740 20 1 3.4912 -2.8871 10.8267 21 1 5.7497 -2.9306 11.7085 22 1 5.3085 -1.9076 9.5546 23 6 2.0783 -0.7967 1.2105 24 1 -0.3634 -1.0272 0.0305 25 1 -0.3634 0.4872 -0.9048 26 1 -0.3632 0.5400 0.8744 27 1 1.3207 -1.4806 -1.5848 28 1 2.3879 -0.1066 -2.0001 29 1 3.1161 -2.6415 -0.7653 30 1 4.1880 -1.2876 -1.2160 31 1 3.2471 -3.1989 1.4125 32 1 4.9194 -2.6265 1.2026 33 1 4.4599 -3.8188 3.6569 34 1 5.0846 -1.7656 5.4929 35 1 3.3571 -2.1606 5.6597 36 1 4.6387 -2.7987 7.9422 37 1 5.6116 -5.6375 11.3132 38 1 2.1445 -0.1593 2.0923 39 1 1.4561 -1.6689 1.4108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583882156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:07 Heat of formation + Delta-G solvation = -66.917213 kcal Electronic energy + Delta-G solvation = -20245.731353 eV Core-core repulsion = 16995.274103 eV Total energy + Delta-G solvation = -3250.457250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09786 -38.86864 -38.03343 -34.53713 -33.75172 -33.59414 -31.82481 -30.14347 -28.63010 -26.95317 -25.25319 -24.00948 -21.38249 -20.37266 -20.21703 -19.62766 -18.64273 -17.25132 -16.22372 -16.10039 -15.70481 -15.38066 -14.97246 -14.72990 -14.65716 -14.04934 -13.71182 -13.49500 -13.21234 -13.07998 -12.73922 -12.48446 -12.43582 -12.20366 -12.13396 -11.98761 -11.44662 -11.24655 -11.12555 -10.85943 -10.73444 -10.65824 -10.08272 -9.71881 -9.66910 -8.90318 -8.79737 -8.55626 -8.32560 -6.42713 -3.95374 2.75064 2.98293 3.02850 3.09488 3.13800 3.54065 3.89774 4.01974 4.37791 4.45736 4.53938 4.68356 4.90056 4.97259 5.09231 5.12630 5.18986 5.26680 5.29142 5.44888 5.48913 5.55449 5.65814 5.68236 5.76264 5.77002 5.80364 5.87071 6.08012 6.10707 6.56865 6.70425 6.73666 7.42219 7.73379 7.98363 8.36553 8.44962 8.79619 9.27766 9.61215 10.69446 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040194 B = 0.003182 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.457535 B = 8798.405261 C = 9174.410459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.083 0.917 4 C -0.127 4.127 5 C 0.034 3.966 6 N -0.500 5.500 7 C 0.029 3.971 8 C 0.512 3.488 9 O -0.533 6.533 10 N -0.710 5.710 11 C 0.108 3.892 12 C 0.437 3.563 13 O -0.580 6.580 14 N -0.576 5.576 15 C -0.311 4.311 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.874 5.874 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C 0.037 3.963 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.411 0.589 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.374 0.626 37 H 0.276 0.724 38 H 0.102 0.898 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 10.471 -19.108 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.165 4.165 5 C -0.094 4.094 6 N -0.224 5.224 7 C -0.103 4.103 8 C 0.297 3.703 9 O -0.409 6.409 10 N -0.365 5.365 11 C -0.020 4.020 12 C 0.224 3.776 13 O -0.464 6.464 14 N -0.214 5.214 15 C -0.439 4.439 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.513 5.513 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.091 4.091 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.208 0.792 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.958 10.864 -18.903 22.886 hybrid contribution -0.556 -0.046 0.721 0.912 sum -7.514 10.817 -18.182 22.451 Atomic orbital electron populations 1.21772 0.94619 1.01806 1.01865 1.22085 0.95307 0.99974 0.94294 0.89860 1.22484 0.96944 0.98987 0.98100 1.22902 0.98968 0.98230 0.89263 1.64579 1.24741 1.31574 1.01502 1.22170 1.03129 0.93359 0.91610 1.20369 0.77046 0.85358 0.87495 1.90658 1.48730 1.19593 1.81945 1.45689 1.70874 1.13972 1.05973 1.20949 1.02822 0.96921 0.81285 1.19651 0.85284 0.89676 0.83039 1.90537 1.55762 1.29392 1.70710 1.42127 1.62068 1.11449 1.05711 1.19444 1.44840 0.90534 0.89100 0.86085 1.25070 0.97044 0.97712 0.96078 1.69619 1.46018 1.28665 1.06986 0.86664 0.79337 0.83151 0.80311 1.19387 1.19957 1.19208 1.23478 0.87634 0.98925 0.99031 0.92761 0.92517 0.92325 0.91436 0.91036 0.93661 0.90147 0.91802 0.87477 0.75082 0.89712 0.89823 0.79229 0.91363 0.87973 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.15 37.16 0.34 -0.75 16 2 C -0.10 -0.89 3.66 -88.75 -0.32 -1.21 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.00 6.51 -25.37 -0.17 -1.16 16 5 C 0.03 0.30 6.70 -2.76 -0.02 0.29 16 6 N -0.50 -5.86 5.11 -231.90 -1.18 -7.05 16 7 C 0.03 0.33 5.31 -4.97 -0.03 0.30 16 8 C 0.51 7.60 7.46 -10.98 -0.08 7.52 16 9 O -0.53 -9.42 14.30 5.56 0.08 -9.34 16 10 N -0.71 -11.04 5.53 -61.47 -0.34 -11.38 16 11 C 0.11 1.85 6.15 -5.20 -0.03 1.82 16 12 C 0.44 9.55 7.85 -10.98 -0.09 9.46 16 13 O -0.58 -14.51 15.24 5.55 0.08 -14.43 16 14 N -0.58 -13.34 5.09 -10.96 -0.06 -13.39 16 15 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 16 H 0.12 3.78 7.39 -52.48 -0.39 3.40 16 17 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 18 N -0.87 -24.90 13.96 55.50 0.77 -24.12 16 19 Si 0.88 18.95 27.74 -169.99 -4.71 14.23 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 23 C 0.04 0.42 5.03 -1.90 -0.01 0.41 16 24 H 0.05 0.41 8.12 -51.93 -0.42 -0.02 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.47 7.85 -51.93 -0.41 0.07 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.36 7.68 -51.93 -0.40 -0.04 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.63 7.98 -51.93 -0.41 0.22 16 32 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.41 6.26 7.44 -40.82 -0.30 5.96 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 37 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.10 1.43 6.43 -51.92 -0.33 1.10 16 39 H 0.04 0.46 7.90 -51.93 -0.41 0.05 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -31.98 321.17 -7.03 -39.02 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.86 Total: 12.51 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -0.65 Total: 9.11 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.81 Total: -55.94 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.16 Total: -23.77 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.98 -7.03 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583882156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.902 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds