Wall clock time and date at job start Mon Mar 30 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.62881 * 2 1 4 4 C 1.55140 * 110.70724 * 123.28946 * 2 1 3 5 5 C 1.54909 * 101.65362 * 154.03712 * 4 2 1 6 6 N 1.47842 * 104.79593 * 322.92936 * 5 4 2 7 7 C 1.46903 * 111.00005 * 146.36326 * 6 5 4 8 8 C 1.50698 * 109.46957 * 69.15744 * 7 6 5 9 9 O 1.21281 * 120.00311 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99815 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47127 * 179.97438 * 11 10 8 13 13 O 1.21290 * 119.99862 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99993 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00140 * 179.97438 * 14 12 11 16 16 H 1.08009 * 120.00010 * 0.02562 * 15 14 12 17 17 C 1.38945 * 120.00522 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99630 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00474 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46980 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46889 * 120.00111 * 19 17 15 22 22 H 1.48499 * 109.47222 * 240.00135 * 19 17 15 23 23 C 1.47450 * 108.56692 * 24.09823 * 6 5 4 24 24 H 1.09002 * 109.47153 * 183.10770 * 1 2 3 25 25 H 1.09001 * 109.46832 * 63.10961 * 1 2 3 26 26 H 1.09004 * 109.47261 * 303.10942 * 1 2 3 27 27 H 1.08995 * 110.99471 * 272.13210 * 4 2 1 28 28 H 1.09002 * 110.98988 * 35.94664 * 4 2 1 29 29 H 1.09001 * 110.37080 * 204.10149 * 5 4 2 30 30 H 1.08996 * 110.37346 * 81.76407 * 5 4 2 31 31 H 1.08990 * 109.47406 * 189.16406 * 7 6 5 32 32 H 1.09009 * 109.46837 * 309.16204 * 7 6 5 33 33 H 0.96992 * 120.00168 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47187 * 300.00443 * 11 10 8 35 35 H 1.09005 * 109.47103 * 59.99468 * 11 10 8 36 36 H 0.96999 * 120.00427 * 0.02562 * 14 12 11 37 37 H 0.97010 * 119.99899 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.88969 * 239.60192 * 23 6 5 39 39 H 1.09000 * 110.02185 * 118.48314 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0785 -0.7965 1.2131 5 6 3.4651 -1.2476 0.6900 6 7 3.2490 -1.5490 -0.7412 7 6 4.4406 -1.2191 -1.5344 8 6 5.5503 -2.1815 -1.1977 9 8 5.3668 -3.0558 -0.3774 10 7 6.7471 -2.0701 -1.8075 11 6 7.8257 -3.0060 -1.4807 12 6 9.0482 -2.6676 -2.2943 13 8 9.0213 -1.7360 -3.0705 14 7 10.1718 -3.3996 -2.1587 15 6 11.2837 -3.0921 -2.8993 16 1 11.2595 -2.2629 -3.5911 17 6 12.4419 -3.8469 -2.7600 18 7 12.4712 -4.8560 -1.9186 19 14 13.9568 -3.4283 -3.7696 20 1 13.6661 -2.2583 -4.6366 21 1 15.0839 -3.1026 -2.8591 22 1 14.3246 -4.5917 -4.6160 23 6 2.0756 -0.7885 -1.2091 24 1 -0.3633 -1.0262 0.0557 25 1 -0.3633 0.4648 -0.9166 26 1 -0.3634 0.5614 0.8608 27 1 2.1812 -0.1543 2.0877 28 1 1.4459 -1.6562 1.4340 29 1 3.7984 -2.1401 1.2196 30 1 4.1930 -0.4443 0.8030 31 1 4.2033 -1.2950 -2.5954 32 1 4.7596 -0.2023 -1.3052 33 1 6.8943 -1.3702 -2.4628 34 1 8.0628 -2.9309 -0.4194 35 1 7.5067 -4.0227 -1.7105 36 1 10.1935 -4.1444 -1.5377 37 1 13.2797 -5.3833 -1.8216 38 1 1.3132 -1.4737 -1.5795 39 1 2.3694 -0.0982 -1.9999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583882157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:10 Heat of formation + Delta-G solvation = -74.754154 kcal Electronic energy + Delta-G solvation = -20084.466388 eV Core-core repulsion = 16833.669303 eV Total energy + Delta-G solvation = -3250.797085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97689 -38.79039 -37.90410 -34.43236 -33.63859 -33.48806 -31.39011 -30.08703 -28.61133 -26.85946 -25.10457 -24.14030 -21.42972 -20.45292 -20.10773 -19.54886 -18.12788 -17.31272 -16.33574 -15.67533 -15.57409 -15.31238 -14.91710 -14.44866 -14.37945 -13.99524 -13.85117 -13.66322 -13.26235 -13.20794 -12.85050 -12.23257 -12.14733 -12.00009 -11.84317 -11.64172 -11.45658 -11.14555 -11.12905 -10.99342 -10.79723 -10.41530 -10.33112 -9.65479 -9.59952 -8.76114 -8.63811 -8.40045 -8.10803 -6.52128 -3.94165 2.88297 3.09822 3.19376 3.23255 3.30050 3.73641 3.96291 4.11754 4.33549 4.47266 4.59602 4.88198 5.00555 5.06294 5.14692 5.16559 5.20521 5.22391 5.28466 5.33397 5.45496 5.65068 5.68186 5.77307 5.85127 5.92270 5.97688 6.06087 6.07810 6.10138 6.70854 6.81016 6.83457 7.45555 7.86249 7.91778 8.44007 8.52690 9.04064 9.38869 9.86652 10.64832 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.065483 B = 0.002795 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.491373 B =10015.500653 C =10260.352919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.046 3.954 6 N -0.511 5.511 7 C 0.032 3.968 8 C 0.511 3.489 9 O -0.532 6.532 10 N -0.711 5.711 11 C 0.111 3.889 12 C 0.428 3.572 13 O -0.598 6.598 14 N -0.550 5.550 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.045 3.955 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.409 0.591 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.081 0.919 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.982 7.887 4.058 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 H 0.092 0.908 4 C -0.164 4.164 5 C -0.082 4.082 6 N -0.236 5.236 7 C -0.099 4.099 8 C 0.296 3.704 9 O -0.408 6.408 10 N -0.366 5.366 11 C -0.017 4.017 12 C 0.214 3.786 13 O -0.485 6.485 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.082 4.082 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.247 0.753 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.021 7.188 4.102 20.743 hybrid contribution 1.198 0.851 -0.367 1.515 sum -17.823 8.039 3.735 19.905 Atomic orbital electron populations 1.21726 0.94233 1.02138 1.01638 1.22393 0.96468 0.99170 0.95566 0.90755 1.22821 0.96567 0.99829 0.97184 1.23107 0.96147 1.00662 0.88237 1.63297 1.02342 1.55113 1.02801 1.22189 0.90655 0.96927 1.00127 1.20390 0.82853 0.85691 0.81470 1.90672 1.81612 1.35033 1.33459 1.45698 1.11429 1.34878 1.44618 1.20918 0.87108 0.93820 0.99837 1.19766 0.84953 0.86387 0.87488 1.90491 1.83903 1.32384 1.41708 1.41811 1.10103 1.28822 1.37710 1.19776 0.88668 1.14992 1.19951 0.87637 1.25334 0.99546 0.95555 0.97353 1.69627 1.29787 1.18546 1.35508 0.85754 0.80448 0.78599 0.79262 1.19141 1.20610 1.20600 1.22959 0.93170 0.95509 0.96606 0.92230 0.92602 0.92611 0.90973 0.90479 0.88913 0.93941 0.87854 0.91783 0.75303 0.89983 0.89881 0.77024 0.91631 0.90118 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.14 37.16 0.34 -0.56 16 2 C -0.12 -0.92 3.54 -88.80 -0.31 -1.24 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.12 6.52 -24.59 -0.16 -1.28 16 5 C 0.05 0.53 5.74 -2.30 -0.01 0.52 16 6 N -0.51 -6.20 4.86 -232.69 -1.13 -7.33 16 7 C 0.03 0.39 5.06 -4.98 -0.03 0.36 16 8 C 0.51 8.08 7.63 -10.98 -0.08 7.99 16 9 O -0.53 -10.06 15.04 5.56 0.08 -9.98 16 10 N -0.71 -11.78 5.53 -61.47 -0.34 -12.12 16 11 C 0.11 2.06 6.15 -5.20 -0.03 2.03 16 12 C 0.43 9.84 7.85 -10.99 -0.09 9.76 16 13 O -0.60 -15.28 15.24 5.55 0.08 -15.20 16 14 N -0.55 -13.68 5.29 -10.97 -0.06 -13.74 16 15 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 16 H 0.11 2.99 7.16 -52.48 -0.38 2.62 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 18 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 19 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C 0.05 0.42 6.45 -2.83 -0.02 0.40 16 24 H 0.06 0.40 8.11 -51.93 -0.42 -0.03 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.69 8.02 -51.93 -0.42 0.28 16 29 H 0.09 1.28 7.38 -51.93 -0.38 0.90 16 30 H 0.04 0.49 7.62 -51.93 -0.40 0.09 16 31 H 0.10 1.06 8.03 -51.93 -0.42 0.64 16 32 H 0.06 0.67 7.85 -51.92 -0.41 0.26 16 33 H 0.41 6.58 7.44 -40.82 -0.30 6.28 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.08 0.73 7.82 -51.93 -0.41 0.33 16 39 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -31.25 325.18 -7.31 -38.55 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.91 Total: 12.52 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -0.63 Total: 10.11 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.81 Total: -56.42 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.17 Total: -25.18 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.25 -7.31 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583882157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.200 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds