Wall clock time and date at job start Mon Mar 30 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.62881 * 2 1 4 4 C 1.55140 * 110.70724 * 123.28946 * 2 1 3 5 5 C 1.54909 * 101.65362 * 154.03712 * 4 2 1 6 6 N 1.47842 * 104.79593 * 322.92936 * 5 4 2 7 7 C 1.46903 * 111.00005 * 146.36326 * 6 5 4 8 8 C 1.50698 * 109.46957 * 69.15744 * 7 6 5 9 9 O 1.21281 * 120.00311 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99815 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47127 * 179.97438 * 11 10 8 13 13 O 1.21290 * 119.99862 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99993 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00140 * 179.97438 * 14 12 11 16 16 H 1.08009 * 120.00010 * 0.02562 * 15 14 12 17 17 C 1.38945 * 120.00522 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99630 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00474 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46980 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46889 * 120.00111 * 19 17 15 22 22 H 1.48499 * 109.47222 * 240.00135 * 19 17 15 23 23 C 1.47450 * 108.56692 * 24.09823 * 6 5 4 24 24 H 1.09002 * 109.47153 * 183.10770 * 1 2 3 25 25 H 1.09001 * 109.46832 * 63.10961 * 1 2 3 26 26 H 1.09004 * 109.47261 * 303.10942 * 1 2 3 27 27 H 1.08995 * 110.99471 * 272.13210 * 4 2 1 28 28 H 1.09002 * 110.98988 * 35.94664 * 4 2 1 29 29 H 1.09001 * 110.37080 * 204.10149 * 5 4 2 30 30 H 1.08996 * 110.37346 * 81.76407 * 5 4 2 31 31 H 1.08990 * 109.47406 * 189.16406 * 7 6 5 32 32 H 1.09009 * 109.46837 * 309.16204 * 7 6 5 33 33 H 0.96992 * 120.00168 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47187 * 300.00443 * 11 10 8 35 35 H 1.09005 * 109.47103 * 59.99468 * 11 10 8 36 36 H 0.96999 * 120.00427 * 0.02562 * 14 12 11 37 37 H 0.97010 * 119.99899 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.88969 * 239.60192 * 23 6 5 39 39 H 1.09000 * 110.02185 * 118.48314 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0785 -0.7965 1.2131 5 6 3.4651 -1.2476 0.6900 6 7 3.2490 -1.5490 -0.7412 7 6 4.4406 -1.2191 -1.5344 8 6 5.5503 -2.1815 -1.1977 9 8 5.3668 -3.0558 -0.3774 10 7 6.7471 -2.0701 -1.8075 11 6 7.8257 -3.0060 -1.4807 12 6 9.0482 -2.6676 -2.2943 13 8 9.0213 -1.7360 -3.0705 14 7 10.1718 -3.3996 -2.1587 15 6 11.2837 -3.0921 -2.8993 16 1 11.2595 -2.2629 -3.5911 17 6 12.4419 -3.8469 -2.7600 18 7 12.4712 -4.8560 -1.9186 19 14 13.9568 -3.4283 -3.7696 20 1 13.6661 -2.2583 -4.6366 21 1 15.0839 -3.1026 -2.8591 22 1 14.3246 -4.5917 -4.6160 23 6 2.0756 -0.7885 -1.2091 24 1 -0.3633 -1.0262 0.0557 25 1 -0.3633 0.4648 -0.9166 26 1 -0.3634 0.5614 0.8608 27 1 2.1812 -0.1543 2.0877 28 1 1.4459 -1.6562 1.4340 29 1 3.7984 -2.1401 1.2196 30 1 4.1930 -0.4443 0.8030 31 1 4.2033 -1.2950 -2.5954 32 1 4.7596 -0.2023 -1.3052 33 1 6.8943 -1.3702 -2.4628 34 1 8.0628 -2.9309 -0.4194 35 1 7.5067 -4.0227 -1.7105 36 1 10.1935 -4.1444 -1.5377 37 1 13.2797 -5.3833 -1.8216 38 1 1.3132 -1.4737 -1.5795 39 1 2.3694 -0.0982 -1.9999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583882157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:09 Heat of formation + Delta-G solvation = -98.813855 kcal Electronic energy + Delta-G solvation = -20085.509695 eV Core-core repulsion = 16833.669303 eV Total energy + Delta-G solvation = -3251.840392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.16982 -40.21571 -39.28547 -36.24942 -35.24910 -34.29005 -33.38415 -30.91434 -29.86775 -28.04767 -26.45975 -25.42293 -22.35454 -21.40038 -21.31991 -21.08582 -20.07540 -18.65528 -17.48851 -17.19354 -16.87658 -16.71305 -16.24173 -15.96289 -15.77454 -15.55079 -14.84106 -14.63434 -14.56781 -13.98416 -13.92048 -13.69747 -13.56185 -13.45949 -12.96485 -12.89211 -12.60634 -12.45632 -12.32948 -12.11550 -11.80512 -11.62130 -11.58947 -11.50715 -10.86871 -10.57106 -10.18674 -10.08533 -9.27529 -8.52136 -6.02488 1.34485 1.42426 1.56570 1.63183 1.89912 1.96291 2.30386 3.03531 3.15000 3.15228 3.63299 3.69836 3.89376 3.98940 4.22210 4.24091 4.33675 4.37326 4.43134 4.44534 4.56025 4.63535 4.66085 4.87914 4.93633 5.06314 5.12868 5.20489 5.30265 5.30829 5.37979 5.48914 5.90136 5.92963 6.03126 6.45722 6.58296 7.02419 7.23106 7.43462 7.92987 8.65048 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.065483 B = 0.002795 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.491373 B =10015.500653 C =10260.352919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.082 0.918 4 C -0.121 4.121 5 C 0.044 3.956 6 N -0.534 5.534 7 C 0.039 3.961 8 C 0.511 3.489 9 O -0.566 6.566 10 N -0.710 5.710 11 C 0.123 3.877 12 C 0.433 3.567 13 O -0.623 6.623 14 N -0.561 5.561 15 C -0.336 4.336 16 H 0.087 0.913 17 C -0.012 4.012 18 N -0.917 5.917 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.271 1.271 22 H -0.271 1.271 23 C 0.044 3.956 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.398 0.602 37 H 0.280 0.720 38 H 0.081 0.919 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.796 8.928 3.705 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.083 4.083 6 N -0.259 5.259 7 C -0.092 4.092 8 C 0.298 3.702 9 O -0.444 6.444 10 N -0.366 5.366 11 C -0.005 4.005 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.196 5.196 15 C -0.465 4.465 16 H 0.105 0.895 17 C -0.213 4.213 18 N -0.557 5.557 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.083 4.083 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.861 8.233 3.754 21.825 hybrid contribution 1.394 0.515 -0.235 1.504 sum -18.467 8.748 3.519 20.735 Atomic orbital electron populations 1.21700 0.93034 1.02157 1.02506 1.22380 0.97384 0.99059 0.94155 0.89948 1.22795 0.94831 1.00089 0.98162 1.23029 0.97746 0.99281 0.88282 1.63218 1.03120 1.56583 1.02964 1.22201 0.89296 0.96451 1.01246 1.21125 0.83025 0.85701 0.80368 1.90663 1.82110 1.36689 1.34915 1.45723 1.11318 1.34599 1.44927 1.20718 0.85764 0.94665 0.99314 1.20425 0.85495 0.85207 0.86814 1.90467 1.84569 1.33323 1.42794 1.41870 1.10374 1.29378 1.37984 1.19775 0.90241 1.15492 1.21032 0.89535 1.26155 1.01873 0.95116 0.98125 1.69693 1.30807 1.18997 1.36204 0.84796 0.76846 0.78390 0.77851 1.19369 1.19618 1.19642 1.23029 0.92014 0.95738 0.97537 0.92647 0.91674 0.91832 0.89673 0.90881 0.91941 0.93969 0.85747 0.89725 0.74840 0.89098 0.89137 0.76744 0.91066 0.90119 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.14 71.98 0.66 -0.77 16 2 C -0.11 -1.49 3.54 -9.61 -0.03 -1.52 16 3 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.12 -1.98 6.52 31.98 0.21 -1.77 16 5 C 0.04 1.00 5.74 86.77 0.50 1.50 16 6 N -0.53 -12.24 4.86 -890.09 -4.33 -16.57 16 7 C 0.04 0.86 5.06 85.56 0.43 1.29 16 8 C 0.51 15.71 7.63 87.66 0.67 16.38 16 9 O -0.57 -21.39 15.04 -3.03 -0.05 -21.44 16 10 N -0.71 -22.97 5.53 -466.78 -2.58 -25.56 16 11 C 0.12 4.55 6.15 85.63 0.53 5.07 16 12 C 0.43 20.03 7.85 87.66 0.69 20.72 16 13 O -0.62 -32.05 15.24 -3.06 -0.05 -32.09 16 14 N -0.56 -28.30 5.29 -306.99 -1.62 -29.93 16 15 C -0.34 -18.55 9.68 84.04 0.81 -17.73 16 16 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 17 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 18 N -0.92 -48.92 13.05 21.66 0.28 -48.63 16 19 Si 1.00 41.76 29.55 68.60 2.03 43.79 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 C 0.04 0.71 6.45 86.64 0.56 1.27 16 24 H 0.05 0.63 8.11 -2.39 -0.02 0.61 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.25 8.02 -2.39 -0.02 1.23 16 29 H 0.06 1.78 7.38 -2.39 -0.02 1.76 16 30 H 0.04 0.93 7.62 -2.39 -0.02 0.92 16 31 H 0.12 2.22 8.03 -2.39 -0.02 2.21 16 32 H 0.09 1.55 7.85 -2.38 -0.02 1.53 16 33 H 0.41 12.89 7.44 -92.71 -0.69 12.20 16 34 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 36 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 37 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 38 H 0.08 1.30 7.82 -2.39 -0.02 1.29 16 39 H 0.07 0.93 7.56 -2.39 -0.02 0.91 16 Total: -1.00 -66.78 325.18 -1.19 -67.96 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -0.36 Total: 38.18 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 5.49 Total: 24.28 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -8.25 Total: -120.68 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.09 Total: -53.53 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -66.78 -1.19 -67.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583882157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.849 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds