Wall clock time and date at job start Mon Mar 30 2020 05:20:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86795 * 119.99894 * 2 1
4 4 H 1.48500 * 109.46959 * 269.99763 * 3 2 1
5 5 H 1.48500 * 109.47522 * 29.99669 * 3 2 1
6 6 H 1.48502 * 109.47204 * 150.00018 * 3 2 1
7 7 C 1.37869 * 119.99774 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00694 * 0.02562 * 7 2 1
9 9 C 1.50704 * 120.00106 * 180.02562 * 7 2 1
10 10 H 1.08997 * 110.53725 * 61.15850 * 9 7 2
11 11 C 1.54270 * 110.48466 * 298.54911 * 9 7 2
12 12 C 1.53869 * 106.63967 * 217.73352 * 11 9 7
13 13 C 1.54268 * 106.60115 * 359.97438 * 12 11 9
14 14 H 1.09001 * 110.48482 * 264.93365 * 13 12 11
15 15 N 1.46902 * 110.48849 * 142.41914 * 13 12 11
16 16 C 1.46897 * 110.99677 * 86.45792 * 15 13 12
17 17 C 1.53005 * 109.47054 * 180.02562 * 16 15 13
18 18 C 1.50699 * 109.47326 * 179.97438 * 17 16 15
19 19 O 1.21236 * 120.00024 * 359.97438 * 18 17 16
20 20 N 1.34768 * 120.00134 * 179.97438 * 18 17 16
21 21 C 1.34781 * 120.00395 * 179.97438 * 20 18 17
22 22 N 1.34778 * 120.00341 * 179.97438 * 21 20 18
23 23 O 1.21538 * 119.99803 * 0.02562 * 21 20 18
24 24 C 1.54895 * 104.19476 * 23.60777 * 13 12 11
25 25 H 0.97004 * 119.99809 * 0.02562 * 1 2 3
26 26 H 1.09002 * 110.03399 * 98.42351 * 11 9 7
27 27 H 1.08995 * 110.02943 * 337.04251 * 11 9 7
28 28 H 1.08999 * 110.03405 * 119.26051 * 12 11 9
29 29 H 1.09001 * 110.03705 * 240.64196 * 12 11 9
30 30 H 1.00900 * 110.99469 * 210.40859 * 15 13 12
31 31 H 1.08999 * 109.47267 * 299.99657 * 16 15 13
32 32 H 1.08999 * 109.47935 * 60.00044 * 16 15 13
33 33 H 1.09003 * 109.46619 * 299.99322 * 17 16 15
34 34 H 1.08990 * 109.47151 * 59.99237 * 17 16 15
35 35 H 0.97000 * 120.00482 * 359.97438 * 20 18 17
36 36 H 0.96995 * 119.99593 * 0.02562 * 22 21 20
37 37 H 0.96994 * 119.99855 * 179.97438 * 22 21 20
38 38 H 1.09001 * 110.75082 * 80.37254 * 24 13 12
39 39 H 1.08991 * 110.75596 * 203.55944 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1940 0.0005
8 1 1.4646 -2.1293 0.0005
9 6 3.5115 -1.1941 0.0011
10 1 3.8936 -0.7015 0.8952
11 6 4.0519 -0.5038 -1.2683
12 6 5.2985 -1.2942 -1.7029
13 6 5.4733 -2.4377 -0.6823
14 1 6.1727 -2.1460 0.1013
15 7 5.9357 -3.6598 -1.3535
16 6 7.4003 -3.6771 -1.4653
17 6 7.8430 -4.9618 -2.1686
18 6 9.3454 -4.9793 -2.2839
19 8 9.9977 -4.0553 -1.8472
20 7 9.9641 -6.0219 -2.8724
21 6 11.3078 -6.0374 -2.9760
22 7 11.9265 -7.0804 -3.5641
23 8 11.9617 -5.1111 -2.5382
24 6 4.0550 -2.6421 -0.0942
25 1 -0.4850 0.8401 -0.0004
26 1 4.3231 0.5282 -1.0454
27 1 3.2996 -0.5299 -2.0565
28 1 5.1508 -1.7047 -2.7018
29 1 6.1745 -0.6457 -1.6919
30 1 5.5996 -4.4832 -0.8769
31 1 7.7307 -2.8144 -2.0437
32 1 7.8413 -3.6373 -0.4693
33 1 7.5125 -5.8248 -1.5905
34 1 7.4020 -5.0012 -3.1645
35 1 9.4423 -6.7614 -3.2215
36 1 11.4046 -7.8197 -3.9132
37 1 12.8935 -7.0912 -3.6390
38 1 3.4408 -3.2411 -0.7666
39 1 4.1085 -3.1035 0.8917
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000584775353.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:20:37
Heat of formation + Delta-G solvation = -76.023860 kcal
Electronic energy + Delta-G solvation = -20095.680067 eV
Core-core repulsion = 16844.827924 eV
Total energy + Delta-G solvation = -3250.852144 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.42282 -38.76879 -37.92324 -35.02120 -34.94999 -33.74998 -32.33989 -30.61837
-28.33538 -26.98965 -24.36466 -23.19360 -21.91466 -20.81032 -19.64734 -19.13461
-18.98930 -17.93894 -16.65409 -16.57325 -16.39157 -15.66037 -15.27870 -15.00838
-14.80630 -14.45587 -14.18396 -13.49114 -13.40981 -12.80572 -12.48175 -12.32288
-12.00705 -11.46197 -11.29953 -11.25432 -10.82881 -10.50567 -10.46743 -10.32219
-10.23932 -10.03371 -9.97571 -9.86657 -9.65631 -9.31540 -8.90883 -8.49772
-8.24289 -6.02116 -4.00250 1.78158 2.11083 2.92768 3.34608 3.42900
3.45486 3.70842 4.14548 4.47866 4.49622 4.78881 4.93985 5.25792
5.28221 5.40390 5.54107 5.57179 5.74465 5.76092 5.90754 6.03549
6.11044 6.29408 6.37819 6.45694 6.55036 6.66704 6.74118 6.84911
6.97924 7.00161 7.20288 7.36455 7.56968 7.63530 7.71555 7.85364
8.00402 8.58783 9.01746 9.61551 11.11238
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.058234 B = 0.002883 C = 0.002800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 480.702632 B = 9708.996318 C = 9997.930449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.069 3.931
3 Si 0.881 3.119
4 H -0.278 1.278
5 H -0.296 1.296
6 H -0.265 1.265
7 C -0.507 4.507
8 H 0.073 0.927
9 C 0.014 3.986
10 H 0.028 0.972
11 C -0.132 4.132
12 C -0.109 4.109
13 C 0.078 3.922
14 H 0.043 0.957
15 N -0.682 5.682
16 C 0.070 3.930
17 C -0.135 4.135
18 C 0.517 3.483
19 O -0.464 6.464
20 N -0.693 5.693
21 C 0.694 3.306
22 N -0.859 5.859
23 O -0.535 6.535
24 C -0.104 4.104
25 H 0.262 0.738
26 H 0.039 0.961
27 H 0.068 0.932
28 H 0.067 0.933
29 H 0.044 0.956
30 H 0.338 0.662
31 H 0.080 0.920
32 H 0.037 0.963
33 H 0.099 0.901
34 H 0.110 0.890
35 H 0.411 0.589
36 H 0.399 0.601
37 H 0.419 0.581
38 H 0.072 0.928
39 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.279 -17.312 -8.150 27.163
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.132 4.132
3 Si 0.710 3.290
4 H -0.204 1.204
5 H -0.223 1.223
6 H -0.190 1.190
7 C -0.545 4.545
8 H 0.091 0.909
9 C -0.005 4.005
10 H 0.047 0.953
11 C -0.170 4.170
12 C -0.147 4.147
13 C -0.031 4.031
14 H 0.061 0.939
15 N -0.313 5.313
16 C -0.060 4.060
17 C -0.175 4.175
18 C 0.303 3.697
19 O -0.332 6.332
20 N -0.360 5.360
21 C 0.393 3.607
22 N -0.430 5.430
23 O -0.406 6.406
24 C -0.142 4.142
25 H 0.072 0.928
26 H 0.058 0.942
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.063 0.937
30 H 0.155 0.845
31 H 0.099 0.901
32 H 0.055 0.945
33 H 0.118 0.882
34 H 0.128 0.872
35 H 0.246 0.754
36 H 0.228 0.772
37 H 0.252 0.748
38 H 0.091 0.909
39 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 19.838 -15.444 -8.062 26.402
hybrid contribution 0.543 -0.162 0.347 0.665
sum 20.381 -15.606 -7.715 26.804
Atomic orbital electron populations
1.69912 1.06281 1.26815 1.51305 1.24999 0.94638 0.99020 0.94546
0.86905 0.79965 0.83687 0.78435 1.20364 1.22277 1.19029 1.21026
0.88723 0.94340 1.50390 0.90886 1.19897 0.96500 0.91131 0.92993
0.95350 1.22624 0.95994 0.97480 1.00888 1.22133 0.97742 0.95734
0.99090 1.22519 0.96846 0.89455 0.94287 0.93930 1.60577 1.08326
1.05314 1.57079 1.21709 0.88759 0.96285 0.99231 1.21694 0.89265
1.01584 1.05000 1.21074 0.91066 0.80924 0.76632 1.90860 1.67194
1.33423 1.41703 1.44235 1.07268 1.24905 1.59629 1.16215 0.81837
0.83384 0.79313 1.43102 1.11871 1.22728 1.65289 1.91132 1.63973
1.35387 1.50117 1.22571 0.92892 0.99872 0.98817 0.92790 0.94216
0.91352 0.91415 0.93736 0.84465 0.90138 0.94508 0.88248 0.87156
0.75423 0.77245 0.74824 0.90905 0.93205
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16
2 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16
3 Si 0.88 22.19 24.68 -169.99 -4.19 17.99 16
4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16
6 H -0.27 -6.44 6.36 56.52 0.36 -6.08 16
7 C -0.51 -14.20 8.98 -34.44 -0.31 -14.51 16
8 H 0.07 2.20 8.02 -52.49 -0.42 1.78 16
9 C 0.01 0.33 2.30 -90.07 -0.21 0.12 16
10 H 0.03 0.69 7.32 -51.93 -0.38 0.31 16
11 C -0.13 -2.87 4.64 -25.61 -0.12 -2.99 16
12 C -0.11 -1.96 6.45 -25.62 -0.17 -2.13 16
13 C 0.08 1.30 3.17 -66.05 -0.21 1.09 16
14 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16
15 N -0.68 -9.03 6.29 -104.97 -0.66 -9.69 16
16 C 0.07 0.84 4.82 -3.82 -0.02 0.82 16
17 C -0.13 -1.06 5.96 -27.88 -0.17 -1.23 16
18 C 0.52 5.41 7.77 -10.99 -0.09 5.33 16
19 O -0.46 -7.54 14.38 -18.21 -0.26 -7.80 16
20 N -0.69 -4.74 5.24 -15.78 -0.08 -4.82 16
21 C 0.69 6.50 8.78 -86.91 -0.76 5.73 16
22 N -0.86 -3.24 8.88 27.63 0.25 -2.99 16
23 O -0.53 -8.40 15.58 -18.47 -0.29 -8.69 16
24 C -0.10 -1.99 5.71 -24.70 -0.14 -2.13 16
25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
26 H 0.04 0.87 5.73 -51.93 -0.30 0.57 16
27 H 0.07 1.58 7.82 -51.93 -0.41 1.17 16
28 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16
29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16
30 H 0.34 3.89 8.47 -39.29 -0.33 3.56 16
31 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16
32 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16
33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
34 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.41 0.72 8.71 -40.82 -0.36 0.36 16
36 H 0.40 -0.03 8.84 -40.82 -0.36 -0.39 16
37 H 0.42 1.30 8.93 -40.82 -0.36 0.94 16
38 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16
39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
LS Contribution 318.41 15.07 4.80 4.80
Total: -1.00 -38.43 318.41 -7.82 -46.25
By element:
Atomic # 1 Polarization: 5.90 SS G_CDS: -5.87 Total: 0.03 kcal
Atomic # 6 Polarization: -5.71 SS G_CDS: -2.28 Total: -7.99 kcal
Atomic # 7 Polarization: -44.87 SS G_CDS: 0.28 Total: -44.59 kcal
Atomic # 8 Polarization: -15.95 SS G_CDS: -0.55 Total: -16.50 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -4.19 Total: 17.99 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -38.43 -7.82 -46.25 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000584775353.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.771 kcal
(2) G-P(sol) polarization free energy of solvation -38.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.205 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds