Wall clock time and date at job start Mon Mar 30 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99894 * 2 1 4 4 H 1.48500 * 109.46959 * 269.99763 * 3 2 1 5 5 H 1.48500 * 109.47522 * 29.99669 * 3 2 1 6 6 H 1.48502 * 109.47204 * 150.00018 * 3 2 1 7 7 C 1.37869 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00694 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00106 * 180.02562 * 7 2 1 10 10 H 1.08997 * 110.53725 * 61.15850 * 9 7 2 11 11 C 1.54270 * 110.48466 * 298.54911 * 9 7 2 12 12 C 1.53869 * 106.63967 * 217.73352 * 11 9 7 13 13 C 1.54268 * 106.60115 * 359.97438 * 12 11 9 14 14 H 1.09001 * 110.48482 * 264.93365 * 13 12 11 15 15 N 1.46902 * 110.48849 * 142.41914 * 13 12 11 16 16 C 1.46897 * 110.99677 * 86.45792 * 15 13 12 17 17 C 1.53005 * 109.47054 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47326 * 179.97438 * 17 16 15 19 19 O 1.21236 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34768 * 120.00134 * 179.97438 * 18 17 16 21 21 C 1.34781 * 120.00395 * 179.97438 * 20 18 17 22 22 N 1.34778 * 120.00341 * 179.97438 * 21 20 18 23 23 O 1.21538 * 119.99803 * 0.02562 * 21 20 18 24 24 C 1.54895 * 104.19476 * 23.60777 * 13 12 11 25 25 H 0.97004 * 119.99809 * 0.02562 * 1 2 3 26 26 H 1.09002 * 110.03399 * 98.42351 * 11 9 7 27 27 H 1.08995 * 110.02943 * 337.04251 * 11 9 7 28 28 H 1.08999 * 110.03405 * 119.26051 * 12 11 9 29 29 H 1.09001 * 110.03705 * 240.64196 * 12 11 9 30 30 H 1.00900 * 110.99469 * 210.40859 * 15 13 12 31 31 H 1.08999 * 109.47267 * 299.99657 * 16 15 13 32 32 H 1.08999 * 109.47935 * 60.00044 * 16 15 13 33 33 H 1.09003 * 109.46619 * 299.99322 * 17 16 15 34 34 H 1.08990 * 109.47151 * 59.99237 * 17 16 15 35 35 H 0.97000 * 120.00482 * 359.97438 * 20 18 17 36 36 H 0.96995 * 119.99593 * 0.02562 * 22 21 20 37 37 H 0.96994 * 119.99855 * 179.97438 * 22 21 20 38 38 H 1.09001 * 110.75082 * 80.37254 * 24 13 12 39 39 H 1.08991 * 110.75596 * 203.55944 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8936 -0.7015 0.8952 11 6 4.0519 -0.5038 -1.2683 12 6 5.2985 -1.2942 -1.7029 13 6 5.4733 -2.4377 -0.6823 14 1 6.1727 -2.1460 0.1013 15 7 5.9357 -3.6598 -1.3535 16 6 7.4003 -3.6771 -1.4653 17 6 7.8430 -4.9618 -2.1686 18 6 9.3454 -4.9793 -2.2839 19 8 9.9977 -4.0553 -1.8472 20 7 9.9641 -6.0219 -2.8724 21 6 11.3078 -6.0374 -2.9760 22 7 11.9265 -7.0804 -3.5641 23 8 11.9617 -5.1111 -2.5382 24 6 4.0550 -2.6421 -0.0942 25 1 -0.4850 0.8401 -0.0004 26 1 4.3231 0.5282 -1.0454 27 1 3.2996 -0.5299 -2.0565 28 1 5.1508 -1.7047 -2.7018 29 1 6.1745 -0.6457 -1.6919 30 1 5.5996 -4.4832 -0.8769 31 1 7.7307 -2.8144 -2.0437 32 1 7.8413 -3.6373 -0.4693 33 1 7.5125 -5.8248 -1.5905 34 1 7.4020 -5.0012 -3.1645 35 1 9.4423 -6.7614 -3.2215 36 1 11.4046 -7.8197 -3.9132 37 1 12.8935 -7.0912 -3.6390 38 1 3.4408 -3.2411 -0.7666 39 1 4.1085 -3.1035 0.8917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584775353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:37 Heat of formation + Delta-G solvation = -76.023860 kcal Electronic energy + Delta-G solvation = -20095.680067 eV Core-core repulsion = 16844.827924 eV Total energy + Delta-G solvation = -3250.852144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42282 -38.76879 -37.92324 -35.02120 -34.94999 -33.74998 -32.33989 -30.61837 -28.33538 -26.98965 -24.36466 -23.19360 -21.91466 -20.81032 -19.64734 -19.13461 -18.98930 -17.93894 -16.65409 -16.57325 -16.39157 -15.66037 -15.27870 -15.00838 -14.80630 -14.45587 -14.18396 -13.49114 -13.40981 -12.80572 -12.48175 -12.32288 -12.00705 -11.46197 -11.29953 -11.25432 -10.82881 -10.50567 -10.46743 -10.32219 -10.23932 -10.03371 -9.97571 -9.86657 -9.65631 -9.31540 -8.90883 -8.49772 -8.24289 -6.02116 -4.00250 1.78158 2.11083 2.92768 3.34608 3.42900 3.45486 3.70842 4.14548 4.47866 4.49622 4.78881 4.93985 5.25792 5.28221 5.40390 5.54107 5.57179 5.74465 5.76092 5.90754 6.03549 6.11044 6.29408 6.37819 6.45694 6.55036 6.66704 6.74118 6.84911 6.97924 7.00161 7.20288 7.36455 7.56968 7.63530 7.71555 7.85364 8.00402 8.58783 9.01746 9.61551 11.11238 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.058234 B = 0.002883 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.702632 B = 9708.996318 C = 9997.930449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.014 3.986 10 H 0.028 0.972 11 C -0.132 4.132 12 C -0.109 4.109 13 C 0.078 3.922 14 H 0.043 0.957 15 N -0.682 5.682 16 C 0.070 3.930 17 C -0.135 4.135 18 C 0.517 3.483 19 O -0.464 6.464 20 N -0.693 5.693 21 C 0.694 3.306 22 N -0.859 5.859 23 O -0.535 6.535 24 C -0.104 4.104 25 H 0.262 0.738 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.338 0.662 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.411 0.589 36 H 0.399 0.601 37 H 0.419 0.581 38 H 0.072 0.928 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.279 -17.312 -8.150 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.545 4.545 8 H 0.091 0.909 9 C -0.005 4.005 10 H 0.047 0.953 11 C -0.170 4.170 12 C -0.147 4.147 13 C -0.031 4.031 14 H 0.061 0.939 15 N -0.313 5.313 16 C -0.060 4.060 17 C -0.175 4.175 18 C 0.303 3.697 19 O -0.332 6.332 20 N -0.360 5.360 21 C 0.393 3.607 22 N -0.430 5.430 23 O -0.406 6.406 24 C -0.142 4.142 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.246 0.754 36 H 0.228 0.772 37 H 0.252 0.748 38 H 0.091 0.909 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.838 -15.444 -8.062 26.402 hybrid contribution 0.543 -0.162 0.347 0.665 sum 20.381 -15.606 -7.715 26.804 Atomic orbital electron populations 1.69912 1.06281 1.26815 1.51305 1.24999 0.94638 0.99020 0.94546 0.86905 0.79965 0.83687 0.78435 1.20364 1.22277 1.19029 1.21026 0.88723 0.94340 1.50390 0.90886 1.19897 0.96500 0.91131 0.92993 0.95350 1.22624 0.95994 0.97480 1.00888 1.22133 0.97742 0.95734 0.99090 1.22519 0.96846 0.89455 0.94287 0.93930 1.60577 1.08326 1.05314 1.57079 1.21709 0.88759 0.96285 0.99231 1.21694 0.89265 1.01584 1.05000 1.21074 0.91066 0.80924 0.76632 1.90860 1.67194 1.33423 1.41703 1.44235 1.07268 1.24905 1.59629 1.16215 0.81837 0.83384 0.79313 1.43102 1.11871 1.22728 1.65289 1.91132 1.63973 1.35387 1.50117 1.22571 0.92892 0.99872 0.98817 0.92790 0.94216 0.91352 0.91415 0.93736 0.84465 0.90138 0.94508 0.88248 0.87156 0.75423 0.77245 0.74824 0.90905 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 2 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 22.19 24.68 -169.99 -4.19 17.99 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.27 -6.44 6.36 56.52 0.36 -6.08 16 7 C -0.51 -14.20 8.98 -34.44 -0.31 -14.51 16 8 H 0.07 2.20 8.02 -52.49 -0.42 1.78 16 9 C 0.01 0.33 2.30 -90.07 -0.21 0.12 16 10 H 0.03 0.69 7.32 -51.93 -0.38 0.31 16 11 C -0.13 -2.87 4.64 -25.61 -0.12 -2.99 16 12 C -0.11 -1.96 6.45 -25.62 -0.17 -2.13 16 13 C 0.08 1.30 3.17 -66.05 -0.21 1.09 16 14 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 15 N -0.68 -9.03 6.29 -104.97 -0.66 -9.69 16 16 C 0.07 0.84 4.82 -3.82 -0.02 0.82 16 17 C -0.13 -1.06 5.96 -27.88 -0.17 -1.23 16 18 C 0.52 5.41 7.77 -10.99 -0.09 5.33 16 19 O -0.46 -7.54 14.38 -18.21 -0.26 -7.80 16 20 N -0.69 -4.74 5.24 -15.78 -0.08 -4.82 16 21 C 0.69 6.50 8.78 -86.91 -0.76 5.73 16 22 N -0.86 -3.24 8.88 27.63 0.25 -2.99 16 23 O -0.53 -8.40 15.58 -18.47 -0.29 -8.69 16 24 C -0.10 -1.99 5.71 -24.70 -0.14 -2.13 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.04 0.87 5.73 -51.93 -0.30 0.57 16 27 H 0.07 1.58 7.82 -51.93 -0.41 1.17 16 28 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.34 3.89 8.47 -39.29 -0.33 3.56 16 31 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 32 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.41 0.72 8.71 -40.82 -0.36 0.36 16 36 H 0.40 -0.03 8.84 -40.82 -0.36 -0.39 16 37 H 0.42 1.30 8.93 -40.82 -0.36 0.94 16 38 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -38.43 318.41 -7.82 -46.25 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.87 Total: 0.03 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.28 Total: -7.99 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.28 Total: -44.59 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.55 Total: -16.50 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.19 Total: 17.99 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.43 -7.82 -46.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584775353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.771 kcal (2) G-P(sol) polarization free energy of solvation -38.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds